Datasets_overview.csv

task;Type;Species;Example question;Example sequence;Example label;Dataset source link
H3_yeast;Histones;yeast;Can you detect whether the nucleotide sequence <DNA> exhibits a significant presence of H3 histone protein occupancy in yeast cells?;AAATCCTCAGGATGTTTCTCTCCTCTGTCTTTCTTTGCCGAGCTCCATCGTGCTAGCGCATCGGACAGGAAGCAGTGAAATACAAGAAAAGTATACAAGCAGTATTCCTGCTCAAGAACCCAGTTTTCAGTTATAGTTTCCACTCCTTTCAATAGATGGGAAACTATATATCCATTAACTAAAATGGCCAGTCAGACTATCTCTTCTCCTCACTAGTGCCTAATCTCTGGTGTCGCCACTCCTGCTGCTGCTAATTATAAGGGCAAAGTCAGACCATCACTTACATTGAGGTGAATATTAAAACCAGTGAAGGTTCTGTTTTTCTCGGGAGTATTTCCGGCAGTAACACCGTTACTTATACCAAAGAGAATTTTTCTGTTGGTATGATTACTGACCCTGTCTGCTCGAAGCACGGTATCATCATTTACCGTTGTTTCTTTCGTCCTAGATATCGGTGTCTCAGAAACTCCAATTGAAGATGTACAGGTGATTAATTACGT;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
H4_yeast;Histones;yeast;Does the H4 histone protein show a high degree of occupancy on the nucleotide sequence <DNA> in yeast?;GTATAAAAGATTATATGGCATTGGATTCGCCGACAGATGGAATTATATTTGATGAAAAGGACGAAAATGGTGAAAAATTCTGGAAAAGGGCATGCAGAACCATATTTCTTTTTAGAGAGCTGTCAAGAAGTTTTCCAATAGGCGTAATAATCAGAAACGATCCGTTGATATATCGTTCATCATTTCAAAATACTAATATATTGGGAAGTTTAGTCTTCAAACTCGAACCCTTGTGCAATATACACAACAATATACCAGTATTAGGTGCCCTGGAAAGTATTATTGACATATCTGAGGCAAGAAGTGAAAACAACACTGATCTGCACGCTGTGCCGGAACTAAGTGTCAACGAGGGCGATAATATCTTCCACTATGTTGGCTACAAGAAACTTCGTGCCGATTATACGTGCTTCGATAAAAATGGAGAATTTTTAAGCGCCTCGCTTTACACTACATGGTATGTCCCGAACAGCAACAACACTAACATAGAGGACAACATC;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
H3K4me1_K562;Histones;human;Does the nucleosomal DNA of that sequence <DNA> in human myelogenous leukemia K562 cells exhibit the histone modification H3K4me1?;GAAAGCATTTGCTGCGGGTGACATTGATGTGGATGGACCTGAGCCGAGGCTGAGAGCTGCAGCAGCTAAGTGGGGAAGCACAGCCTTAAAGCCAGAGAGACCCAGCTTCAAATTTCAGCTCTCCACTGGCTCTTGGTATGGGCAAGGGACCTGGCACAGCTACCAAATGGGGTTAGCCAGACACCCAGAAGCCCTTAGAACATGGCAGGGCCCCGGAGGCGGGGGCATGTGAGGGCGGCCCTTGGGATGTCAGGGGAGTGGGGAGCAAGGCCTCACCGAGTCCATAGTACCTCCTGCATGGAACGGACAACAGTGCCCCGCACCCCAATATACAGGGATGGCTTCTCCTGTTGGAGCTGAGCTGTAGGGAGAGAGCGTCACAGGCTCCCAGGGGTGCCCAGGGGAAAGGGGAGGGGGCTGACTCAAGGCTGATGGGTTTAGGCAGACAGGAGAGGGGTCCCACCCTCAAAGACCTAGACCCCTCCCTCTATCCATCTGGGAGCCAAGCCCAG;No;https://arxiv.org/abs/2311.12570
H3K4me3_K562;Histones;human;Does the nucleosomal DNA of that sequence <DNA> in human myelogenous leukemia K562 cells exhibit the histone modification H3K4me3?;GCAAGAAGTAATGACTTGTCATTACAGCAACCCTTTCCTGAAGAATCTTTGGCCTTTTGTTGTTATTATTGTTAAGTCAAGAGGTGCCCTTATTGGCTGCCTATTCATCTTGTTCCAAGGAATACCATTGTTTATCAGCCATTGTCACAAATCCACGTGGTCAAGACCCCCTGGTTTCCTCTCTGGCCTTGCCCCTCCGTTTTCCCGGGCAATAAAATATGTCCACTAAAATCCTGTTATTCTCGTTGACACTAGGAAGCCTGTTTTCAAGGATTATTTCCTACCATCACCCTGGCTTACAGGAGACCATGAAGCTTTTCAGTGAATCTGGTATCTTCCTCACTCATGCACACCTTATTGCTTTAGTGAAGGAGGTGTCGTTCAGGCTTTTTTATGGAACATAGCTAGCTGGTGGACTTCTGATTTCATTTTGACTTGCTCACCTTTCTGACCCTTTCCTCATTACCCTGCCAAGGCAGTTGTGCATTTCAACTTTGATTACCACAGATCAT;No;https://arxiv.org/abs/2311.12570
H3K27ac_K562;Histones;human;In human myelogenous leukemia K562 cells, is the histone modification H3K27ac present in the nucleosomal DNA <DNA>?;CGCAGAGGCCGGGGGAGCTGCAGGTCCGAACTCGGCCGGCCCGGGGCGAGGGCGGGCGGGGAGCGGGGCGGGCTAGGGCGAGCGAGGCTGCCACACCCCCGGGACTCGCTGGTGCGAGGCTCAGCATGCCGGCTGCGGAAGTCCCGCACAGGGCAGCTTCCAGGCCTCCTGTCCCTAGAGCAGTAAATGCAGATCAGCACTTCTGCCCCTCACTGTACTCCCACTCTCATCCCCTTCCTCCCTCTACCACCACCAAAAGGCCAGAATTTTTAAGTTGATTGATATTTTTTTATTAGGATAATAAAGTCAGATGCAGTATATTGTGTATGTTTTTTTGTTTCGTGTTGCGTTTTTGTAGAGATGGGGTCTCACTGTGTTGCCCAGGCTGCTCTCTTAATTCCTGGGCTCTAGTGATCCTCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCTGGCCTTGACTGTGTTGTTAAATGGCTATTTTAGACCATGAAA;Yes;https://arxiv.org/abs/2311.12570
DNA methylation (HUES64);DNA methylation;human;In human embryonic stem cells, is the sequence's CpG site located at the center <DNA> methylated?;ACCTTCTGGACTATGGTGAAACAGAAAATATCTTCACATAAAAACTAGACAGAAGCTTTCTGAGAAACTTCTTTATGATGTGTTCTTTCATCTCACAGAGTTGTAACTTTCCTTTGGTTGAGCAGTTTGGAAACACTCTTTATGGGGAATCTGCAAGTGGATATTTGGAGTCCTTTGTGGCCTATAGTGGAAAACGAAATATCTTCACATAAAAACTAGACAGAATCATTCTGAGAAACTTCTTTGTGATGTGCACGTTCATCACAAAGAGTTGAACATTTCTTTCAATTCAGCAGTTTGGAAACAGTCCTTTTGTAGAATCTGTGAAGGGATATTTCTCAGCCCATTGATGCCTATGGATGAAATAGGAAATATTCTCACATTAAAAACTAGACAGAAATTTCTGAGAAACTTCTTTGTGATATGTGGTTTCATCTCACAGAGTTGAACCGTTCTTTTGGTTGAGAAGATTGGAAACACTCTTTTTGTAGAATCTGCAAGTGGATATTTGG;No;https://arxiv.org/abs/2311.12570
Chrom. Accessibility (HepG2);DNA accessibility;human;Does the accessibility profile of human hepatoma HepG2 cells reveal an open chromatin state for the sequence <DNA>?;AAATAAAATATGAAAATAAACTATAAGTAATGACATATTTATGGTTTTATTTAAAACACTGTGAATTAAAGTTTTTGAAACTATTACCTTTATAAAAGGCTAATTGGTTTTAGAAAAATGAATACTACTCCTTTCCACTCAGAAAAATACAGATTTCAATTCCTCCCATCCTTACTTGCTAGGCAAACATAAGAACCAAACAGGATCAAAAGGCTTCTTTATAAGTAAATATATAACATCCACCTATTCGGTATTTTCAAAATTTAAGGTCTCACAACTCCAACTCCTTTAACATATGACTCATCGTGAAAAGACTGAAGCAAGGTTCCTACAATGTACATTCATTTACTAAAATAACAAGCCCTTAACTCTTAGTGGTATAATAATAGAAACATATTGTACTTCAGAAAAGACTTATTTTACAAGAGCAACAAAACTACATTTTAAAAAACTGTTACAATGAATAAAAGCTTATGAAAATCCCTGTAAAGAAGAATGCCCCCCAATTTCAAATTTCAATTTTTAAATCTGCGGAAATTAACCACTCATGTATAACAAATATTTATTTTATAACAGACAATTATCAGAGCAGATTCAGCT;Yes;https://academic.oup.com/nargab/article/5/2/lqad026/7092956
Promoters;Promoters;human/mouse;Does the nucleotide sequence <DNA> contain any motifs commonly found in promoter regions from human or mouse cells?;ACCGTTGAGATAGAATAGTCGAGCGACCGTAGCAGTTGTACTACATTTAACATTGGGTTTTACCTAGGCGCTTCCTCAGCTACAGCGGCTAAAGCAGTTACTCAGCTAGATGGGTTGCTAAGTAAGCTCTTCAGATCAGAGCATGACGAAACGACTTGACGATGCGGCAGTGGGAGCTGGGCCACGTGGAGACTACTACATCTATGAGGATAAGGTTCCGGCCCGGTCGACTGCAACAGCGCCACCCCCAGAACCTCCTAAGCTGGTCAACGATAAGCCCCACAATTTCGTCTCTGGAAT;No;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
TATA promoters;Promoters;human/mouse;Can you determine if the promoter region of this DNA sequence <DNA> includes a TATA box motif in human or mouse cells?;AGAAAGAACTACTTTTATGTTCTTAAGATATTAATAGTTCACAGCTTTGAGAAATCAAAGAGTATCTGACAGTACAATTACTAATTAACTTAGATTCCCAGAGAGAAACATTTATGTAAACTACTTTCAGGGTTAAGGCTTTTAACAATTGTATGTTGAGCAGAAGATTATTAAACACTGATAGGCTGGTAAGGGTGCAATAAAACTTTATGAGTAGGTCAATATATACCTAAGCAGCTTTCCTTGATCATTATTTTGGCAGCCTTATCCAAGTCTGGTACAACATAGCAAAGAGAACAG;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
Non-TATA promoters;Promoters;human/mouse;Is there a promoter in human or mouse cells in the DNA sequence <DNA> that lacks a TATA box?;TAATAGACAGACTGTGAATCTTGGCTGCTGCGGAGCGGGGAAGGAGAGATGAGGGCCCAGGCACGATGGGGGGAACCAGACACAGTCCAGCCTGGCGGGGACGGAGCTGGGGGTCTGCCTTCCCAGGCTGACCACTTATTGCCCACCCATCCCCAACATAATTAGCAGGCAGGATGCCTGGGTTTCTCACGGGGGTGGGGGCAGGGCCTCTGTCCGGGGACGTCACCCGTTAAACTTCCTCTCTCAGCCACACAGGAAGCTGAGCCGGCTTGGGGCCCAGCATACACAGGCCCCCAGGAC;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
Enhancers;Enhancers;human;Can regulatory elements that act as enhancers in human cells be found within this sequence <DNA> ?;TTTATTTACTTATTTATTTACTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCTATTCTTCTGCCTCAGCCTCAGCTTTGCAAACCTAGCCCAAGTAGCTGGGTTTACAAACATGTGCCATCACGCCCGACTAATTTTTATATTTTTGCTAGAGATGGGGTT;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
Enhancer types;Enhancers;human;Does the sequence <DNA> contain an enhancer active in human cells, and if so, how strong is the enhancer element?;AATTTTCTCATTTTCTCATAAAGTTTAACAGTTGTTTATTTGAGTCAGAATTCAAATAAGCTTCTGTACATTACAATTGGTTTTAAGTTCTTATAAGACTCTATAGGTTTTCCCTTCATAATTTTTCTTGCAATTTATTTGTTAAAGAAATTGGGTCATTTGTCCTATTGAGTGCTCCACTGTCTGTTTTTATTATTGTA;No;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
Enhancers (plants);Enhancers;plant;Are there any enhancer motifs from cassava plant seedlings present in the nucleotide sequence <DNA>?;AGGGATTGAAGTAGCACAGGCTAAAATGGATATTGCTATTTCTCAACGAAAATATGTTTTGGATATATTAGAAGAAACAAGAATGTTAGATTGTAGACATGTGGATACTCCCATAGACCTAAATGTCAAACTTGCTCCTAAATAGGGGGAGTCACTTAAAGATTCTGGTACATATAAAAGATTGGTTGGCAAACTCAACTATCTCACTATCACATGACCAGTTATTTTCTTTGGTGTAAGTGTGGTTAGTCAATTTCTTCAAGATCCATACAGTAACCACTGGGATGCAGTTATTCGTATTCTTAGATATATCAAAGGAGCTCCAAAAAAAGGTCTACAATATGAAGACAATAGTCACTCACAAATTGTTAGGTATTCTGATGCAGATTGGACAAGTTTTCCTTTAGATAGACGATCTATTTCAAGATATTGTATTATGATTGGAGGGAATCCTATATCCTGTAAAAGTAAAAAACAGGTTGTGGTTGTAAGATTAAGTGCAAAACTAGAATATAGAGCTATGGCTTTGACAACATGCAAACTTATTTGGCTGAAACTTCTTCAGAAATTGAAGTAGGGCGACACTGGCCAAATGAAGCTGAGATGTGATAATCAAGTTGCTCTTCATATTGCATCGAATCCAGTTTTTCATGAGAAGACGAAGTATATAGAGGTGGATTGTCACTTTGTTAGACAAAAACTGAGTCGGGATCCATTTCTACTAGGTTTATCAACTTAAATGATCAGCTAGCTGATGTTTTTACAAATTCACTCTGAAATTCATGAATCGAATATATTTATAACAAGTTTAGAGTATATGACATATACACTCAAGTTTACGAGGGAATGTTGAAATACTTTCTATAAATAGTCTAGATTTATAGTGACTGTGTGTATAATTAAGTGTTTAGATGATGTGATATGATTGAGATATGATTAGGTTATAATTAAAGAATTGATTTCTTTTATTTCCTATTATATATTCATGTAAGTAATATAT;Yes;https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
Splice sites;Splice sites;human/mouse/rat/fly/zebrafish;Does this sequence <DNA> have an acceptor or donor splice site from human cells present?;AAAAAAAAAAAAAAATTCCTTTAAAGGAATTGTATTAAGTTCTTATCAGTGTTGTATTTTTCTTCCTAGATCTCATATTTTGGATTCTGGATATATTATAATGAGTGACACTTTGACAGCGGATGTCATTGGTCGAAGAGTTGAAGTTAATGGAGAACATGCAACAGTACGTTTTGCTGGTGTTGTCCCTCCCGTGGCAGGTAAGCAATTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTGCAGCTGTTTCTGTGTAAGCTTCTCAGTAGCACTTTATACCACAAATTTTGACGAAATTAACAACTAATTTATAGGTGCCTCCTGTATCCAGTTTTATCTGAGTGACAGTATCCTGTGGTATCTATGATT;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
Splice donors;Splice sites;147 species;Can you determine if the sequence <DNA> possesses a donor splice site motif?;TAGTTATAAGGTACTACATGGCAAGTACTAGAACCAGCTGCAGGTCAGGATTTGTAAGTAATGCCTTGTTGGGGCTGACGTGAGCTTTTTCACCAAGCCATTGGCATGTGTAGGAGTTAGGAGCAGTGCACCAGCAATGCGGAGTGCCGGCTTCTGTACTAGAGCCAGCCTCCGACCAGCGAGTGAGCTGCTACCCCTCCTCTCAACACCCACACTGCTTCATGCTTCTGGGCAGTTTCGTTATTCCAAAGCACAGATGGTGTAGAGGGCTGGCAGCTGCCACTCCGTTGTGCAGAGGCTCCTTCGCTCACCCATCACACACATGTTCCTGGAGAACCTGCTCTAGTGCTGGTGCTGGGGGGCCGAGGAACGCGGGAAGGAGGTAGCCTCTGCCTTTACGACACTGATGCTCCGTAGTCGGGGAGACGAGAAAGTAAACAAAGAAGTAAAGTGTGCCGTGCTACTCAGGGTGGTGCCAAGGACAGGGGAGGCGCAGAGAGCCAGAGGGTAGAGCTCGGCTATAGCCCAGTCCATGGCCCTTGAGAACGTGGTCATCAAGTAGGAGGTTCTGGCCTCAGGGAGGGGAGGGAGGGAGACCTG;No;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
Splice acceptors;Splice sites;147 species;Is there any evidence of an acceptor splice site in this sequence <DNA>?;TGGGGGAAAGTTTATCCATTGGGGGAAAAAATGGAATATTATGATTCCAGTAATGATGAGACCTTGGGAGGTGAGAATCCTTCTACTTTAAAATCCTTGAGGCCCTGGATTCAAACCCCAATATTGAGAAAATAATCTGTAGGCAGTATATAATAGGACAGTCTGGTTGTTTGAAAAATATAAAACCAAATTGCCAAGAAAACGCCATTCACTGGTAGTACTTCGTGCCTCTGACAGAAACCCTTAATTTAGGGTCTCTCCGCTCACACATCCAGTGACTACAGTTTCTCTTTTCCTCCTAGAAAAAATACCGCACGAAAATAGAAACTCTCAACTTCACTCCTGTGGATGACAGAGTGGATTACGTGACAGCGAAACAAAGCAGTGAGATCCGAGATGACGTAAGTAGATAGTTGTAAAATCGTACAGCAATGCCGAGACTGTGGCCAAAACTCTCCTCCTGCAATGATTGAGCTAATAGTCCCATCACCGAAATTATCTATGCTAGTAACATAGAGAGATTTCTTAACATCAAGTAATTTCCCTCCATGCCTCTCATTTTTAGATTAAATATCGGAAAGATTGGAACGCCATCAAATC;Yes;https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3
lncRNAs;lncRNA;plant;Does the nucleotide sequence of Sorghum bicolor plant <DNA> contain any lncRNA?;TCGTGGGCATGAAACATTTCTCCTCCCACATTCATAATGACATCAACACCCTCTTGGTCCTCAAGAGTGAACCAAAATGTAAAAATGATAGCCAACATTTTGAGTTTGGAACTTGGATAGAGTGGTGGGTCATTTTTTTCTACTTGTCCACAATGTCCAATAGCAAGAGGAAAATTATTTTGCTTATTTGTGCTCAGTCCACATGCTCCTTCATCTGCCCTGTCCATTGATCCTAGTAGCTCACGCTTATCACAATGTCATGCACACCATCGTCCAACCGCCTAAGCTCAACATTAGATACAATGGACTGTGATTTAACAAAGGATCTTGTCATTGTGATTAGTAGCACTCCACGGGATAATACCCCACTTTTGTTTGAATTTCATAATTACAAAGCATAGGTTTCCAAGAAACTGTGTGGTTCATGCAAGCAGTATTTTCGTCCAAATGTGTGTATGCATTTATCATATTTAACAGAACACACATAGAAGAGCATAAACAGTTGTATTAGCTTAGTGCTATAGTGCAAGGTAAAATTAGTTGTTAACTGCTATGTCAAAGCATATATTGATTTGTCAAATAAGCAAAATTACTCAGTTTTCGCTTTTGCTTACCAAGACGGACTTGGTAGATAAATTCTGATTCTTAGTGTGCCACAATGGGTTCTAAATTGCGAAATTAGTCACATATATATTCCCTATTTCTGAATTGCTAACAAGAGTTCATGGCTTCGTGCTCAAGAGAAAACTGGGGGGAGAGGGGGAGGGGGGGGACAAAAGAATCCTTACCTTCTGGCAAATGTCATTGCAGTCTGAGACTTGACTGGCCAAGGCACGTTGAAGTCTGCCAGCTCCCATT;Yes;https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
Promoter strength (tobacco leaf);Promoter activity;plant;What is the promoter strength exhibited by the given DNA sequence <DNA> in plant tobacco leaves, measured within the range of -10 to 10?;TGAGTGAAGGCAGAATTGACCCATGCAGCTTCCTTTCTTTCACCACTCACTTGCTAGGAAACTACAAAAATAGAAAAAGAAAACTCACGGCAACCAAAAACGCGAACTCCTAGAGGGTTTCGAACACTTTGAAATTTGTATCAGACATCAAATGAAATCTTTAACTTCTT;-0.54;https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
Promoter strength (maize protoplasts);Promoter activity;plant;What is the promoter strength exhibited by the given DNA sequence <DNA> in plant maize protoplasts, measured within the range of -10 to 10?;CAGTACTACCCATTGCTGCAGGCTGCTTGCCTGCCTACAAATATGGCCACCAGTGACCTGCAAAGCCATCAGCCATGGCAGATCGAGCATCTCCTCTAAGTTCTAGTAGTAGGGATAGGAATCAGGGTCAGTTTCCTCTCCTGGCTGTAGCAGCAGCAGCAGCAGTGGAA;2.68;https://www.biorxiv.org/content/10.1101/2023.10.24.563624v1
Dev enhancers;Enhancer activity;fly;Compute the developmental enhancer activity of the specified <DNA> sequence from Drosophila melanogaster S2 cells and provide the result on a scale of -10 to 10.;AACATACCCTGCTCTAGCGTATTGCTTTTTAATTGGCAGAAAAATATGTGCTCCGGTCGGTCGGTATTAATATATGTATAAATCCAACCAATATGACACACATTTCATTCAATTTATGACGCACAGCTGACACACTTTTCCCACACTATCTCACCCACATGCATATACACACATACACAGGTTTTTCTGTGCGAAAAATGAATTACGATTCGTCGCGTTTTTTTTTTCTGGTCGCTTGTTTTCGTTTGG;3.42;https://www.nature.com/articles/s41588-022-01048-5
Hk enhancers;Enhancer activity;fly;What is the housekeeping enhancer activity score for the provided DNA sequence <DNA> originating from Drosophila melanogaster S2 cells, presented as a numeric value between -10 and 10?;ATGCCTGTTGGCCTGCGTAAGGAGCTACCATCAACATCAGCATCGCCATCACAATGCCAGGATGATCAGGGCAACAAGAGTTTATAAAATCATGTGACAAATGAGGGTTGCTTAGCTTACTTAGTCGTCCTGTCATCTGTCCTCCTATTTATCTGTCTGGTCCATCTGTCATTTGTCTGCAAACACATGGTCGTTATGACGCATGCCTCACTGTGGCAAATTGCAGTGCCAATTATGTACCATTTTCCA;-0.38;https://www.nature.com/articles/s41588-022-01048-5
RNA Polyadenylation;Polyadenylation;human;an you determine the polyadenylation ratio of the proximal site of the given RNA sequence <DNA> in human HEK293 cells within the range of 0 to 1?;ATTACCTGCGGCCGCAATTCTGCTCGGACTTGTGCACTCTAGTTCTGGTAACTGACCTTCAAAGCTAAAATATAAAACTATTTGGGAAGTATGAAACGATGTCTCGTGATCTGGTGTACCCTTATCCCTGTGACGTTTGGCCTCTGACAATACTGGTATAATTGTAAATAATGTCAAACTCCGTTTTCTAGCAAGTATTAAGGGA;0.42;https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02799-4
RNA degradation (human);RNA degradation;human;What range of degradation rate does the human RNA sequence <DNA> fall within, considering values from -5 to 5?;GCGCTGAGGATCAGCCGCTTCCTGCCTGGATTCCACAGCTTCGCGCCGTGTACTGTCGCCCCATCCCTGCGCGCCCAGCCTGCCAAGCAGCGTGCCCCGGTTGCAGGCGTCATGCAGCGGGCGCGACCCACGCTCTGGGCCGCTGCGCTGACTCTGCTGGTGCTGCTCCGCGGGCCGCCGGTGGCGCGGGCTGGCGCGAGCTCGGCGGGCTTGGGTCCCGTGGTGCGCTGCGAGCCGTGCGACGCGCGTGCACTGGCCCAGTGCGCGCCTCCGCCCGCCGTGTGCGCGGAGCTGGTGCGCGAGCCGGGCTGCGGCTGCTGCCTGACGTGCGCACTGAGCGAGGGCCAGCCGTGCGGCATCTACACCGAGCGCTGTGGCTCCGGCCTTCGCTGCCAGCCGTCGCCCGACGAGGCGCGACCGCTGCAGGCGCTGCTGGACGGCCGCGGGCTCTGCGTCAACGCTAGTGCCGTCAGCCGCCTGCGCGCCTACCTGCTGCCAGCGCCGCCAGCTCCAGGTGAGCCGCCCGCGCCAGGAAATGCTAGTGAGTCGGAGGAAGACCGCAGCGCCGGCAGTGTGGAGAGCCCGTCCGTCTCCAGCACGCACCGGGTGTCTGATCCCAAGTTCCACCCCCTCCATTCAAAGATAATCATCATCAAGAAAGGGCATGCTAAAGACAGCCAGCGCTACAAAGTTGACTACGAGTCTCAGAGCACAGATACCCAGAACTTCTCCTCCGAGTCCAAGCGGGAGACAGAATATGGTCCCTGCCGTAGAGAAATGGAAGACACACTGAATCACCTGAAGTTCCTCAATGTGCTGAGTCCCAGGGGTGTACACATTCCCAACTGTGACAAGAAGGGATTTTATAAGAAAAAGCAGTGTCGCCCTTCCAAAGGCAGGAAGCGGGGCTTCTGCTGGTGTGTGGATAAGTATGGGCAGCCTCTCCCAGGCTACACCACCAAGGGGAAGGAGGACGTGCACTGCTACAGCATGCAGAGCAAGTAGACGCCTGCCGCAAGGTTAATGTGGAGCTCAAATATGCCTTATTTT;0.14;https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02811-x
RNA degradation (mouse);RNA degradation;mouse;Assess the degradation rate of the mouse RNA sequence <DNA> within the scale of -5 to 5.;GGGAAGCGGGCTGTGCGCGCGTGGAGCAGTGGGAACGCCGCTGAGGCTGCGAGTACGCCGTTGCCTTAACAACCGGTGGCAGAGTCCGTTGGGTGATGGCCTCTAATTTTAAGAAGACAACCATGGCATCCAGTGCCCAGAGAAAAAGGATGAGTCCTAAGCCTGAACTTACTGAAGACCAGAAACAGGAAATCCGGGAAGCTTTTGATCTCTTTGATGCTGATGGAACTGGAACTATAGACATCAAAGAACTGAAGGTGGCAATGAGGGCCCTGGGCTTTGAGCCCAAGAAAGAAGAAATTAAGAAAATGATAAGTGAAATTGATAAAGAAGGAACAGGAAAAATGAACTTCAGTGACTTTTTGACAGTGATGACTCAGAAAATGTCTGAGAAAGACACTAAAGAAGAAATCCTGAAAGCTTTCAAGTTGTTCGATGATGATGAGACTGGGAAAATATCATTCAAGAATCTTAAGCGCGTGGCCAAGGAGCTGGGTGAGAACCTGACAGATGAGGAACTGCAGGAAATGATTGATGAAGCTGATCGAGATGGAGATGGTGAGGTCAATGAGCAAGAGTTCCTGCGCATCATGAAAAAGACCAGCCTCTATTAAGATCAGTGTTTCTTTTTCTACTGCAAGCACATGTGACTAGATTTAGTGCCTGGCATTTTGTGAAATATGGCTTTTGAAAGCCTCCCTCCCCCAACCTGGGGTAACTTTAGCCATGACCTTGAATCTATTTTTGACTTTTGGAAGTGTTCTTTGATATTAAGTTCTTTGTACATTTACCTGCTGACTAAATCAACAGGGCAGAACAAGAGCACATAGAGTGGGGAAAAGGGTCTGAAAGTGTGACTGTGGCCACCCCACCTTCCATTACTTCACCTTGCTCATGCATATCCACTCGACTGAAAACATGCAGTGGCTTCTTAGTTGTCCATGTATCCATGTCACCATAAGCAGTGGTTGTTCTTAAAGTGGTTTTGGTTTTCATTTGACACCACAGTACAGTTTTCTCTTTTACAAAACCCAATGAGTGCTTGCTGTGGCATTTGGATGTGTGTTAATGTATTTGTTTGGTCTTTAAAAAAATAAAACCTTTCTTAATTTAAGCTCTCATTCTTTAAAGGATGAGTATTTTTTAGCTTTAACTGTGAGTTCACCTTGTAAACAACTGTGTTGAGGACAGCCTGGTACATATATACAATTTGTCATCGGCCTATGGATTAAAAAAGGGTAATAATTCTTTGTAACTTTTCTGCCATAAATAGTTTTTTTGCTTTC;1.84;https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02811-x
Protein fluorescence;Protein fitness;human;Assess the fluorescence level of the protein with the CDS sequence <DNA> within the scale of -5 to 5.;AGCAAGGGCGAGGAGCTGTTCACCGGGGTGGTGCCCATCCTGGTCGAGCTGGACGGCGACGTAAACGGCCACAAGTTCAGCGTGTCCGGCGAGGGCGAGGGCGATGCCACCTACGGCAAGCTGACCCTGAAGTTCATCTGCACCACCGGCAAGCTGCCCGTGCCCTGGCCCACCCTCGTGACCACCCTGTCGTACGGCGTGCAGTGCTTCAGCCGCTACCCCGACCACATGAAGCAGCACGACTTCTTCAAGTCCGCCATGCCCGAAGGCTACGTCCAGGAGCGCACCATCTTCTTCAAGGACGACGGCAACTACAAGACCCGCGACGAGGTGAAGTTCGAGGGCGACACACTAGTGAACCGCATCGAGCTGAAGGGCATCGACTTCAAGGAGGACGGCAACATCCTGGGGCACAAGCTGGAGTACAACTACGACAGCCACAACGTCTATATCATGGCCGACAAGCAGAAGAACGGCATCAAGGTGAACTTCAAGATCCGCCACAACATCGAGGACGGCAGCGTGCAGCTCGCCGACCACTACCAGCAGAACACCCCCGTCGGCGACGGCCCCGTGCTGCTGCCCGACAACCACTACCTGAGCACCCAGTCCGCCCTGAGCAAAGACCCCAACGAGAAGCGCGATCACATGGTCCTGCTGGAGTTCGTGACCGCCGCCGGGATCACTCACGGCACGGACGAGCCGTACAAGTGA;1.3;https://arxiv.org/abs/1906.08230 / https://arxiv.org/abs/2206.02096
Protein stability;Protein fitness;human;What is the stability of the protein with the CDS <DNA>, measured on a scale from -5 to 5?;ACCACCATCAAAGTTAATGGTCAGGAATACACCGTGCCGCTGTCTCCGGAACAGGCTGCGAAAGCGGCGAAAAAACGTTGGCCGGACTACGAAGTTCAGATCCACGGTAACACCGTTAAAGTTACCCGT;0.85;https://www.science.org/doi/10.1126/science.aan0693
Protein meltome;Protein Melting;human;Within the range of 0 to 100, what is the melting point exhibited by the protein with the given CDS sequence <DNA>?;ATGCACTATTTCACCATTTCCGATTTGGCGCACGAGTTTGATGTGAGCACACGGACGATCCGCTATTATGAAGAACGCGGATTGCTCTCCCCGATTCGGACCGAGTCAGGGCAGCGGCTGTATACGAAAAAGGAGCGGGCGAAACTCAAGCTCATTTTGCGCGGCAAACGGTTCGGCTTTTCGCTCGACGAAATTCATGAGATGATTGCGCTGTTTGATGAGGATCGCACGGGGAAGAAACAGCTTGAAAAAACGGTTGAATACGGGCGGCGGAAATTGAAGGAGGTGAGTGAGCGGATTGAGGATTTGCTTCAGCTGAAGGCGGAGATGGAAGCGCTGCTTTCCGATTTTGAACAGCGATTGCGACAATGGGAGGGATCGGATGGATGA;66.97;https://www.biorxiv.org/content/10.1101/2021.11.09.467890v1