Training complete

README.md

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+---
+library_name: transformers
+license: mit
+base_model: microsoft/biogpt
+tags:
+- generated_from_trainer
+datasets:
+- ncbi_disease
+metrics:
+- precision
+- recall
+- f1
+- accuracy
+model-index:
+- name: biogpt-finetuned-ner
+  results:
+  - task:
+      name: Token Classification
+      type: token-classification
+    dataset:
+      name: ncbi_disease
+      type: ncbi_disease
+      config: ncbi_disease
+      split: validation
+      args: ncbi_disease
+    metrics:
+    - name: Precision
+      type: precision
+      value: 0.3284671532846715
+    - name: Recall
+      type: recall
+      value: 0.40025412960609913
+    - name: F1
+      type: f1
+      value: 0.36082474226804123
+    - name: Accuracy
+      type: accuracy
+      value: 0.9565910770547279
+---
+
+<!-- This model card has been generated automatically according to the information the Trainer had access to. You
+should probably proofread and complete it, then remove this comment. -->
+
+# biogpt-finetuned-ner
+
+This model is a fine-tuned version of [microsoft/biogpt](https://huggingface.co/microsoft/biogpt) on the ncbi_disease dataset.
+It achieves the following results on the evaluation set:
+- Loss: 0.1555
+- Precision: 0.3285
+- Recall: 0.4003
+- F1: 0.3608
+- Accuracy: 0.9566
+
+## Model description
+
+More information needed
+
+## Intended uses & limitations
+
+More information needed
+
+## Training and evaluation data
+
+More information needed
+
+## Training procedure
+
+### Training hyperparameters
+
+The following hyperparameters were used during training:
+- learning_rate: 2e-05
+- train_batch_size: 8
+- eval_batch_size: 8
+- seed: 42
+- optimizer: Use adamw_torch with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
+- lr_scheduler_type: linear
+- num_epochs: 3
+
+### Training results
+
+| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1     | Accuracy |
+|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
+| 0.1601        | 1.0   | 679  | 0.1294          | 0.3       | 0.3698 | 0.3312 | 0.9548   |
+| 0.1095        | 2.0   | 1358 | 0.1303          | 0.3188    | 0.3532 | 0.3351 | 0.9582   |
+| 0.0582        | 3.0   | 2037 | 0.1555          | 0.3285    | 0.4003 | 0.3608 | 0.9566   |
+
+
+### Framework versions
+
+- Transformers 4.51.2
+- Pytorch 2.1.0+cu121
+- Datasets 3.5.0
+- Tokenizers 0.21.1

config.json

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+{
+  "activation_dropout": 0.0,
+  "architectures": [
+    "BioGptForTokenClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "bos_token_id": 0,
+  "eos_token_id": 2,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 1024,
+  "id2label": {
+    "0": "O",
+    "1": "B-Disease",
+    "2": "I-Disease"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 4096,
+  "label2id": {
+    "B-Disease": 1,
+    "I-Disease": 2,
+    "O": 0
+  },
+  "layer_norm_eps": 1e-12,
+  "layerdrop": 0.0,
+  "max_position_embeddings": 1024,
+  "model_type": "biogpt",
+  "num_attention_heads": 16,
+  "num_hidden_layers": 24,
+  "pad_token_id": 1,
+  "scale_embedding": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.51.2",
+  "use_cache": true,
+  "vocab_size": 42384
+}

model.safetensors

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+version https://git-lfs.github.com/spec/v1
+oid sha256:109c3812cbda128ae9d2f77dece4af9cd7fd2870bb4ebc65ddb47835365b4559
+size 1387108052

special_tokens_map.json

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+{
+  "bos_token": "<s>",
+  "eos_token": "</s>",
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "unk_token": "<unk>"
+}

tokenizer_config.json

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+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "<s>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "<pad>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "</s>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "<unk>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "bos_token": "<s>",
+  "clean_up_tokenization_spaces": false,
+  "eos_token": "</s>",
+  "extra_special_tokens": {},
+  "model_max_length": 1000000000000000019884624838656,
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "tokenizer_class": "BioGptTokenizer",
+  "unk_token": "<unk>"
+}

training_args.bin

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+version https://git-lfs.github.com/spec/v1
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