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 * Point Cloud Library (PCL) - www.pointclouds.org
 * Copyright (c) 2009-2012, Willow Garage, Inc.
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 *   notice, this list of conditions and the following disclaimer.
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 *   disclaimer in the documentation and/or other materials provided
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 *   contributors may be used to endorse or promote products derived
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 *
 * $Id: outofcore_process.cpp 7463 2012-10-05 05:03:04Z stfox88 $
 * \author Justin Rosen
 * \author Stephen Fox
 */

#include <limits>

#include <pcl/common/time.h>
#include <pcl/point_cloud.h>
#include <pcl/point_types.h>

#include <pcl/io/pcd_io.h>
#include <pcl/pcl_macros.h>

#include <pcl/console/print.h>
#include <pcl/console/parse.h>

#include <pcl/outofcore/outofcore.h>
#include <pcl/outofcore/outofcore_impl.h>

#include <boost/accumulators/accumulators.hpp>
#include <boost/accumulators/statistics/min.hpp>
#include <boost/accumulators/statistics/max.hpp>
#include <boost/accumulators/statistics/mean.hpp>
#include <boost/accumulators/statistics/variance.hpp>
#include <boost/algorithm/string/replace.hpp> // for replace_first

namespace ba = boost::accumulators;

// todo: Read clouds as PCLPointCloud2 so we don't need to define PointT explicitly.
//       This also requires our octree to take PCLPointCloud2 as an input.
using PointT = pcl::PointXYZ;

using namespace pcl;
using namespace pcl::outofcore;

using pcl::console::parse_argument;
using pcl::console::parse_file_extension_argument;
using pcl::console::find_switch;
using pcl::console::print_error;
using pcl::console::print_warn;
using pcl::console::print_info;
using pcl::console::print;

#include <boost/foreach.hpp>

using OctreeDisk = OutofcoreOctreeBase<>;
using OctreeDiskNode = OutofcoreOctreeBaseNode<>;
using OctreeBreadthFirstIterator = OutofcoreBreadthFirstIterator<>;
using OctreeDepthFirstIterator = OutofcoreDepthFirstIterator<>;

using AlignedPointT = Eigen::aligned_allocator<PointT>;

void
printDepth(std::size_t depth)
{
  for (std::size_t i = 0; i < depth; i++)
    PCL_INFO ("  ");
}

void
printNode(OctreeDiskNode *)
{
  //
}

int
outofcorePrint (boost::filesystem::path tree_root, std::size_t print_depth, bool bounding_box=false, bool pcd=false, 
		bool point_count=false, bool breadth_first=false)
{
  std::cout << boost::filesystem::absolute (tree_root) << std::endl;

  OctreeDisk* octree;
  octree = new OctreeDisk (tree_root, true);

  Eigen::Vector3d min, max;
  octree->getBoundingBox(min, max);

  // Cloud bounding box
  PCL_INFO (" Bounding Box: <%lf, %lf, %lf> - <%lf, %lf, %lf>\n", min[0], min[1], min[2], max[0], max[1], max[2]);

  // Cloud depth
  std::uint64_t depth = octree->getTreeDepth ();
  PCL_INFO (" Depth: %ld\n", depth);
  if (print_depth > depth)
    print_depth = depth;

  // Cloud point counts at each level
  std::vector<std::uint64_t> lodPoints = octree->getNumPointsVector ();
  PCL_INFO (" Points:\n");
  for (std::uint64_t i = 0; i < lodPoints.size (); i++)
    PCL_INFO ("   %d: %d\n", i, lodPoints[i]);

  // Cloud voxel side length
  PCL_INFO(" Voxel Side Length: %d\n", octree->getVoxelSideLength ());

  // Cloud voxel count
  std::vector<PointT, AlignedPointT> voxel_centers;
  octree->getOccupiedVoxelCenters(voxel_centers);
  PCL_INFO(" Voxel Count: %d\n", voxel_centers.size ());

  // Point data for statistics
  std::vector<std::uint64_t> pointsPerVoxel;
	ba::accumulator_set<std::uint64_t, ba::features< ba::tag::min,  ba::tag::max, ba::tag::mean,  ba::tag::variance> > acc;

  if (!breadth_first)
  {
    OctreeDisk::DepthFirstIterator depth_first_it (*octree);

    while ( *depth_first_it !=nullptr )
    {
      OctreeDiskNode *node = *depth_first_it;
      std::size_t node_depth = node->getDepth();

      printDepth(node_depth);
      std::string metadata_relative_file = node->getMetadataFilename ().string ();
      boost::replace_first(metadata_relative_file, tree_root.parent_path ().string (), "");
      PCL_INFO ("..%s\n", metadata_relative_file.c_str());

      printDepth(node_depth);
      
      if (pcd)
      {
        std::string pcd_relative_file = node->getPCDFilename ().string ();
        boost::replace_first(pcd_relative_file, tree_root.parent_path ().string (), "");
        PCL_INFO ("  PCD: ..%s\n", pcd_relative_file.c_str());
      }
      
      if (bounding_box)
      {
        Eigen::Vector3d min, max;
        node->getBoundingBox(min, max);

        printDepth(node_depth);
        PCL_INFO ("  Bounding Box: <%lf, %lf, %lf> - <%lf, %lf, %lf>\n", min[0], min[1], min[2], max[0], max[1], max[2]);
      }

      if (point_count)
      {
        printDepth(node_depth);
        PCL_INFO ("  Points: %lu\n", node->getDataSize());
        pointsPerVoxel.push_back( node->getDataSize());
        acc(node->getDataSize());
      }

      depth_first_it++;
    }
  }
  else
  {
    OctreeDisk::BreadthFirstIterator breadth_first_it (*octree);
    breadth_first_it.setMaxDepth (static_cast<unsigned int> (print_depth));
    while ( *breadth_first_it !=nullptr )
    {
      OctreeDiskNode *node = *breadth_first_it;
      std::size_t node_depth = node->getDepth();

      printDepth(node_depth);
      std::string metadata_relative_file = node->getMetadataFilename ().string ();
      boost::replace_first(metadata_relative_file, tree_root.parent_path ().string (), "");
      PCL_INFO ("..%s\n", metadata_relative_file.c_str());

      printDepth(node_depth);
      
      if(pcd)
      {
        std::string pcd_relative_file = node->getPCDFilename ().string ();
        boost::replace_first(pcd_relative_file, tree_root.parent_path ().string (), "");
        PCL_INFO ("  PCD: ..%s\n", pcd_relative_file.c_str());
      }
      
      if (bounding_box)
      {
        Eigen::Vector3d min, max;
        node->getBoundingBox(min, max);

        printDepth(node_depth);
        PCL_INFO ("  Bounding Box: <%lf, %lf, %lf> - <%lf, %lf, %lf>\n", min[0], min[1], min[2], max[0], max[1], max[2]);
      }

      if (point_count)
      {
        printDepth(node_depth);
        PCL_INFO ("  Points: %lu\n", node->getDataSize());
        pointsPerVoxel.push_back( node->getDataSize());
        acc(node->getDataSize());
      }

      breadth_first_it++;
    }
  }

  if(point_count)
  {
    PCL_INFO("Points per Voxel:\n");
    PCL_INFO("Min: %u, Max: %u, Mean: %f, StdDev %f\n", ba::min(acc), 
             ba::max(acc), ba::mean(acc), sqrt(ba::variance(acc)));
  }
  
  return 0;
}


void
printHelp (int, char **argv)
{
  print_info ("This program is used to process pcd files into an outofcore data structure viewable by the");
  print_info ("pcl_outofcore_viewer\n\n");
  print_info ("%s <options> <input_tree_dir> \n", argv[0]);
  print_info ("\n");
  print_info ("Options:\n");
  print_info ("\t -depth <depth>                \t Octree depth\n");
  print_info ("\t -bounding_box                 \t Print bounding box info\n");
  print_info ("\t -point_count                  \t Print point count info\n");
  print_info ("\t -pcd                          \t Print pcd file info\n");
  print_info ("\t -breadth                      \t Print nodes in breadth-first (Default depth-first)\n");
  print_info ("\t -h                            \t Display help\n");
  print_info ("\n");
}

int
main (int argc, char* argv[])
{

  // Check for help (-h) flag
  if (argc > 1)
  {
    if (find_switch (argc, argv, "-h"))
    {
      printHelp (argc, argv);
      return (-1);
    }
  }

  // If no arguments specified
  if (argc - 1 < 1)
  {
    printHelp (argc, argv);
    return (-1);
  }

  if (find_switch (argc, argv, "-v"))
    console::setVerbosityLevel (console::L_DEBUG);

  // Defaults
  int depth = std::numeric_limits<int>::max();
  bool breadth_first = find_switch (argc, argv, "-breadth");
  bool bounding_box = find_switch (argc, argv, "-bounding_box");
  bool pcd = find_switch (argc, argv, "-pcd");
  bool point_count = find_switch (argc, argv, "-point_count");

  // Parse options
  parse_argument (argc, argv, "-depth", depth);

  // Parse non-option arguments
  boost::filesystem::path tree_root (argv[argc - 1]);

  // Check if a root directory was specified, use directory of pcd file
  if (boost::filesystem::is_directory (tree_root))
  {
    boost::filesystem::directory_iterator diterend;
    for (boost::filesystem::directory_iterator diter (tree_root); diter != diterend; ++diter)
    {
      const boost::filesystem::path& file = *diter;
      if (!boost::filesystem::is_directory (file))
      {
        if (boost::filesystem::extension (file) == OctreeDiskNode::node_index_extension)
        {
          tree_root = file;
        }
      }
    }
  }

  return outofcorePrint (tree_root, depth, bounding_box, pcd, point_count, breadth_first);
}
