 Karabeci's 2016–17 season was marred by injures, as he was able to make only 23 league appearances without scoring.In January 2017, he suffered an injury while he has home which required surgery, keeping him sidelined for 2 months.He returned to action only on 31 March where he made a substitute appearance in the derby against Vllaznia Shkodër lost 1–2 at home.