 In December 2018, the San Francisco Estuary Institute published a report commissioned by the Santa Clara Valley Water District to establish a vision for Upper Penitencia Creek's lower four miles focusing on ways "to expand flow conveyance and flood water storage from the Coyote Creek confluence upstream to the Dorel Drive bridge in a manner that works with the existing landscape features and supports habitats for native species".Lower Penitencia Creek flows along the historic Mission Road between Mission Santa Clara and Mission San Jose.It runs through the city of Milpitas before receiving flows from Berryessa Creek, Piedmont Creek, Arroyo de los Coches, Tularcitos Creek and Calera Creek before entering Coyote Creek near Dixon Landing Road at the southern end of San Francisco Bay.