 In the next season the club faced a huge crisis finishing the season 13th out of 16 teams.But the team improved a lot and many new players from the Youth Academy were brought in.The 1993–94 season saw Flamurtari finishing 2nd and making Stadiumi Flamurtari a fortress, winning nine and drawing four out of 13 matches played home, but away from home the team had some horrible results culminating with a 5–0 away defeat to KF Laçi.