 After leaving Columbia, Jones would serve as the associate head coach at Boston College for one season before accepting the head coaching job at Boston University.Prior to his second season as head coach at BU, it was announced that BU would be leaving the America East Conference to join the Patriot League on July 1, 2013.As a result of the move, the America East presidents unanimously voted to ban BU from postseason play in all America East sports for the 2012-2013 season.