 He is in charge of the Fringe division after the death of the alternate Colonel Broyles.At first he seems to doubt himself, saying that he "feels like he's missing something, that Broyles would see something he wouldn't" ("Immortality") but he gains more confidence after apprehending the culprit.The alternate timeline Lincoln Lee of the prime universe is an FBI Special Agent, and is distinguished by his use of eyeglasses and generally more clean cut appearance than his parallel universe counterpart.