 Presently, the Capitol University Graduate School offers two doctoral programs and five Master's Programs.In 1987, the preschool and elementary teachers' training departments were transferred to a campus in Gusa, Cagayan de Oro City and named the St. Francis Learning Center, after St. Francis of Assisi.During the 1990s, Cagayan Capitol College opened more tertiary programs like Physical Therapy, Criminology and Computer Science, Cisco Networking Program, the Expanded Tertiary Education Equivalency and Accreditation Program (ETEEAP) and Associate programs.