 Wilkinson married Elizabeth Cecilia Mary Broadhurst on 23 September 1809.Their children were Ann (1814-1814), Emma (1815–1889), Matilda (1817–1876), Oriana (1818–1853), Louisa (1820-), Alfred Broadhurst Wilkinson (1822–1854), and Henry Broadhurst Wilkinson (1824-).He is buried in Steynton Churchyard.