# Path Configuration
from tools.preprocess import *

# Processing context
trait = "Canavan_Disease"

# Input paths
tcga_root_dir = "../DATA/TCGA"

# Output paths
out_data_file = "./output/preprocess/3/Canavan_Disease/TCGA.csv"
out_gene_data_file = "./output/preprocess/3/Canavan_Disease/gene_data/TCGA.csv"
out_clinical_data_file = "./output/preprocess/3/Canavan_Disease/clinical_data/TCGA.csv"
json_path = "./output/preprocess/3/Canavan_Disease/cohort_info.json"

# No directly matching cohorts for Canavan Disease
is_usable = validate_and_save_cohort_info(is_final=False, 
                                         cohort="TCGA",
                                         info_path=json_path,
                                         is_gene_available=False, 
                                         is_trait_available=False)
raise ValueError("No suitable TCGA cohort found for Canavan Disease")