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1.  Genome-wide expression analysis of genetic networks in
Neurospora crassa  Bioinformation  2007;1(10):390-395. The
products of five structural genes and two regulatory genes of
the qa gene cluster of Neurospora crassa control the metabolism
of quinic acid (QA) as a carbon source. A detailed genetic
network model of this metabolic process has been reported. This
investigation is designed to expand the current model of the QA
reaction network. The ensemble method of network identification
was used to model RNA profiling data on the qa gene cluster.
Through microarray and cluster analysis, genome-wide
identification of RNA transcripts associated with quinic acid
metabolism in N. crassa is described and suggests a connection
to other metabolic circuits. More than 100 genes whose products
include carbon metabolism, protein degradation and modification,
amino acid metabolism and ribosome