The binding energy of an atom (including its electrons) is not exactly the same as the binding energy of the atom's nucleus. The measured mass deficits of isotopes are always listed as mass deficits of the neutral atoms of that isotope, and mostly in MeV/ c. As a consequence, the listed mass deficits are not a measure of the stability or binding energy of isolated nuclei, but for the whole atoms. There is a very practical reason for this, namely that it is very hard to totally ionize heavy elements, i.e. strip them of all of their electrons.