It is important to note that EMF or DBF measurements are just qualitative measurements, as an ion does not necessarily cross the channel through the center of its lumen in a straight line and it is often accompanied by other ions moving in the same or opposite directions, which dramatically changes the dynamics of the system. Moreover, unlike steered MD calculations where the protein residues dynamically reposition themselves as an ion or ions are bouncing across the channel, in our EMF or DBF calculations protein is modeled as a static continuum, which further affects the energy calculations in a more quantitative way. Another issue that additionally impacts the measurements is absence of water hydration molecules, which move with the ion and shield part of its charge. Having said all of above, still computing EMF or DBF is valuable to address channel selectivity or gating. Computing either of these two energy barriers is available as an option in BioMOCA.