There are two separate questions to consider. First, is the divergence a real one such that the zero-point energy really is infinite? If we consider the volume V is contained by perfectly conducting walls, very high frequencies can only be contained by taking more and more perfect conduction. No actual method of containing the high frequencies is possible. Such modes will not be stationary in our box and thus not countable in the stationary energy content. So from this physical point of view the above sum should only extend to those frequencies which are countable; a cut-off energy is thus eminently reasonable. However, on the scale of a "universe" questions of general relativity must be included. Suppose even the boxes could be reproduced, fit together and closed nicely by curving spacetime. Then exact conditions for running waves may be possible. However the very high frequency quanta will still not be contained. As per John Wheeler's "geons" these will leak out of the system. So again a cut-off is permissible, almost necessary. The question here becomes one of consistency since the very high energy quanta will act as a mass source and start curving the geometry.