The STRIDE algorithm for secondary protein structure uses this function to model hydrogen bond geometry and it is also used in the lattice of atoms in a bubble raft. For situations requiring a more accurate model, the Stockmayer equation or Moller-Plesset perturbation theory is used in its place, bu
The STRIDE algorithm for secondary protein structure uses this function to model hydrogen bond geometry and it is also used in the lattice of atoms in a bubble raft. For situations requiring a more accurate model, the Stockmayer equation or Moller-Plesset perturbation theory is used in its place, but it is often used for noble gas modeling due to its simplicity. The equation for it includes epsilon, representing the depth of the potential well, and sigma, the value for which it is equal to zero. FTP, identify this potential which contains a 12th power repulsive term and a sixth power attractive term, and which models both the attractive van der Waals forces and the repulsive Pauli forces between neutral atoms and molecules.
The STRIDE algorithm for secondary protein structure uses this function to model hydrogen bond geometry and it is also used in the lattice of atoms in a bubble raft.
Lennard-Jones potential