Model Formulae

The generic function formula and its specific methods provide a way of extracting formulae which have been included in other objects. as.formula is almost identical, additionally preserving attributes when object already inherits from "formula".

formula(x, …)
as.formula(object, env = parent.frame())

# S3 method for formula print(x, showEnv = !identical(e, .GlobalEnv), …)

x, object
R object.
further arguments passed to or from other methods.
the environment to associate with the result, if not already a formula.
logical indicating if the environment should be printed as well.

The models fit by, e.g., the lm and glm functions are specified in a compact symbolic form. The ~ operator is basic in the formation of such models. An expression of the form y ~ model is interpreted as a specification that the response y is modelled by a linear predictor specified symbolically by model. Such a model consists of a series of terms separated by + operators. The terms themselves consist of variable and factor names separated by : operators. Such a term is interpreted as the interaction of all the variables and factors appearing in the term. In addition to + and :, a number of other operators are useful in model formulae. The * operator denotes factor crossing: a*b interpreted as a+b+a:b. The ^ operator indicates crossing to the specified degree. For example (a+b+c)^2 is identical to (a+b+c)*(a+b+c) which in turn expands to a formula containing the main effects for a, b and c together with their second-order interactions. The %in% operator indicates that the terms on its left are nested within those on the right. For example a + b %in% a expands to the formula a + a:b. The - operator removes the specified terms, so that (a+b+c)^2 - a:b is identical to a + b + c + b:c + a:c. It can also used to remove the intercept term: when fitting a linear model y ~ x - 1 specifies a line through the origin. A model with no intercept can be also specified as y ~ x + 0 or y ~ 0 + x. While formulae usually involve just variable and factor names, they can also involve arithmetic expressions. The formula log(y) ~ a + log(x) is quite legal. When such arithmetic expressions involve operators which are also used symbolically in model formulae, there can be confusion between arithmetic and symbolic operator use. To avoid this confusion, the function I() can be used to bracket those portions of a model formula where the operators are used in their arithmetic sense. For example, in the formula y ~ a + I(b+c), the term b+c is to be interpreted as the sum of b and c. Variable names can be quoted by backticks `like this` in formulae, although there is no guarantee that all code using formulae will accept such non-syntactic names. Most model-fitting functions accept formulae with right-hand-side including the function offset to indicate terms with a fixed coefficient of one. Some functions accept other ‘specials’ such as strata or cluster (see the specials argument of terms.formula). There are two special interpretations of . in a formula. The usual one is in the context of a data argument of model fitting functions and means ‘all columns not otherwise in the formula’: see terms.formula. In the context of update.formula, only, it means ‘what was previously in this part of the formula’. When formula is called on a fitted model object, either a specific method is used (such as that for class "nls") or the default method. The default first looks for a "formula" component of the object (and evaluates it), then a "terms" component, then a formula parameter of the call (and evaluates its value) and finally a "formula" attribute. There is a formula method for data frames. If there is only one column this forms the RHS with an empty LHS. For more columns, the first column is the LHS of the formula and the remaining columns separated by + form the RHS.


All the functions above produce an object of class "formula" which contains a symbolic model formula.


A formula object has an associated environment, and this environment (rather than the parent environment) is used by model.frame to evaluate variables that are not found in the supplied data argument. Formulas created with the ~ operator use the environment in which they were created. Formulas created with as.formula will use the env argument for their environment.



See Also

I, offset. For formula manipulation: terms, and all.vars; for typical use: lm, glm, and coplot.

  • formula
  • formula.default
  • formula.formula
  • formula.terms
  • as.formula
  • print.formula
  • [.formula
library(stats) class(fo <- y ~ x1*x2) # "formula" fo typeof(fo) # R internal : "language" terms(fo) environment(fo) environment(as.formula("y ~ x")) environment(as.formula("y ~ x", env = new.env())) ## Create a formula for a model with a large number of variables: xnam <- paste0("x", 1:25) (fmla <- as.formula(paste("y ~ ", paste(xnam, collapse= "+"))))
Documentation reproduced from package stats, version 3.3.3, License: Part of R 3.3.3

Community examples

dibyadeep.paul at Sep 25, 2017 stats v3.4.1

``` #example of usage of y ~ ., to explain the statement: #"The usual one is in the context of a data argument of model #fitting functions and means ‘all columns not otherwise in the formula’: see terms.formula." #create mydata mydata<-data.frame(matrix(c( 1,5501,8.1,9552,1923, 2,5945,7.0,9680,1961, 3,6629,7.3,9731,1979, 4,7556,7.5,11666,2030, 5,8716,7.0,14675,2112, 6,9369,6.4,15265,2192, 7,9920,6.5,15484,2235, 8,10167,6.4,15723,2351, 9,11084,6.3,16501,2411, 10,12504,7.7,16890,2475) , nrow = 10, ncol = 5, byrow=TRUE)) colnames(mydata) <- c("gene","cna","common","PC1","PC2") #generate linear regression fit for mydata. gene ~ . is equivalent to gene ~ cna+common+PC1+PC2, ie. #the righthand side of ~ is a function of all the variables other than gene (which is on the left hand side). mymodel=lm(gene ~ .,data=mydata) #generates the fit ``` at Jan 17, 2017 stats v3.3.1

`y` is the response; `x1`, `x2` and `x3` are independent variables; terms with colons are the interactions between those variables. ```{r} y ~ x1 + x2 + x3 + x1:x2 + x1:x3 + x2:x3 + x1:x2:x3 ``` A more compact form of the above. ```{r} y ~ x1 * x2 * x3 ``` You can specify interactions up to a certain level using the power operator. ```{r} y ~ (x1 + x2 + x3) ^ 2 # same as y ~ x1 + x2 + x3 + x1:x2 + x1:x3 + x2:x3 ``` Minus removes terms from the formula. ```{r} y ~ x1 * x2 * x3 - x1:x2:x3 # same as the previous formula ``` To include powers of variables, use the [`I()`]( function. ```{r} y ~ I(x1 ^ 2) ``` Other functions can be included as is. ```{r} log(y) ~ log(x1) ``` Some functions allow formulae with no left-hand side. ```{r} ~ x1 * x2 * x3 ``` Modelling functions use the syntax plus zero to specify a model with no intercept. ```{r} y ~ x1 + 0 ``` You can also use minus one to specify a model with no intercept. ```{r} y ~ x1 - 1 # same as the previous formula ``` Some functions accept grouping formulae using pipes. ```{r} y ~ x1 + x2 | x3 ``` Groups can sometimes also be nested using forward slashes. ```{r} y ~ x1 + x2 | x3 / x4 ``` `%in%` is rarely used, and works like a colon ```{r} y ~ x1 %in% x2 # same as y ~ x1:x2 ``` Sometimes it is convenient to use [`paste()`]( to construct the formula as a string, then use `as.formula()`. ```{r} x_names <- paste0("x", 1:25) as.formula(paste("y ~ ", paste(x_names, collapse= " + "))) ``` Non-standard variable names can be included by using backticks, though functions are not guaranteed to be able correctly interpret them ```{r} y ~ `x 1` ``` Formulae (along with expressions, calls and names) are language objects. ```{r} is.language(y ~ x) ``` formulae have an associated environment. This tells functions like [`lm()`]( where to look for variables that aren't included in the data argument. ```{r} environment(y ~ x) ``` In advanced usage, you can specify the associated environment. ```{r} environment(as.formula("y ~ x")) environment(as.formula("y ~ x", env = new.env())) ```