{"action":"created","issue":{"url":"https://api.github.com/repos/dictyBase/migration-data/issues/4","labels_url":"https://api.github.com/repos/dictyBase/migration-data/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/dictyBase/migration-data/issues/4/comments","events_url":"https://api.github.com/repos/dictyBase/migration-data/issues/4/events","html_url":"https://github.com/dictyBase/migration-data/issues/4","id":118119776,"number":4,"title":"loading issues with dicty ontologies","user":{"login":"cybersiddhu","id":48740,"avatar_url":"https://avatars.githubusercontent.com/u/48740?v=3","gravatar_id":"","url":"https://api.github.com/users/cybersiddhu","html_url":"https://github.com/cybersiddhu","followers_url":"https://api.github.com/users/cybersiddhu/followers","following_url":"https://api.github.com/users/cybersiddhu/following{/other_user}","gists_url":"https://api.github.com/users/cybersiddhu/gists{/gist_id}","starred_url":"https://api.github.com/users/cybersiddhu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cybersiddhu/subscriptions","organizations_url":"https://api.github.com/users/cybersiddhu/orgs","repos_url":"https://api.github.com/users/cybersiddhu/repos","events_url":"https://api.github.com/users/cybersiddhu/events{/privacy}","received_events_url":"https://api.github.com/users/cybersiddhu/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":8,"created_at":"2015-11-20T20:26:33Z","updated_at":"2015-11-24T16:02:49Z","closed_at":null,"body":"cc: @pfey03 \r\n\r\nBoth `dicty_anatomy.obo` and `plasmid_keywords.obo` failed to load in chado database. I have given the reason of the failure and possible minor fixes that i expect to solve the loading failures.\r\n\r\n### dicty_anatomy.obo\r\nThe `alt_id` [here](https://github.com/dictyBase/migration-data/blob/master/ontologies/dicty_anatomy.obo#L967) points to an existing term [here](https://github.com/dictyBase/migration-data/blob/master/ontologies/dicty_anatomy.obo#L73). As far as i understand, the `alt_id` cannot be an existing id.\r\n\r\nThe possible fix would be either to delete the `alt_id` or point to an removed id(if that is the case)\r\n\r\n### plasmid_keywords.obo\r\nIt lacks a `default-namespace` header. For example `plasmid_inventory.obo` has [one](https://github.com/dictyBase/migration-data/blob/master/ontologies/plasmid_inventory.obo#L5).\r\n\r\nThe fix is to add `default-namespace` header. \r\n\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/dictyBase/migration-data/issues/comments/159314222","html_url":"https://github.com/dictyBase/migration-data/issues/4#issuecomment-159314222","issue_url":"https://api.github.com/repos/dictyBase/migration-data/issues/4","id":159314222,"user":{"login":"pfey03","id":1349602,"avatar_url":"https://avatars.githubusercontent.com/u/1349602?v=3","gravatar_id":"","url":"https://api.github.com/users/pfey03","html_url":"https://github.com/pfey03","followers_url":"https://api.github.com/users/pfey03/followers","following_url":"https://api.github.com/users/pfey03/following{/other_user}","gists_url":"https://api.github.com/users/pfey03/gists{/gist_id}","starred_url":"https://api.github.com/users/pfey03/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pfey03/subscriptions","organizations_url":"https://api.github.com/users/pfey03/orgs","repos_url":"https://api.github.com/users/pfey03/repos","events_url":"https://api.github.com/users/pfey03/events{/privacy}","received_events_url":"https://api.github.com/users/pfey03/received_events","type":"User","site_admin":false},"created_at":"2015-11-24T16:02:49Z","updated_at":"2015-11-24T16:02:49Z","body":"## Renaming ontologies\r\n\r\nIt's much easier.Renamed in local Github and synched, no problem. All my ontologies now have the dicty_ prefix. The literature topic has dictybase and that's fine. Won't fiddle with that.\r\n\r\nThis, from my end, fixes all issues"}}