{"action":"closed","issue":{"url":"https://api.github.com/repos/lomereiter/sambamba/issues/137","labels_url":"https://api.github.com/repos/lomereiter/sambamba/issues/137/labels{/name}","comments_url":"https://api.github.com/repos/lomereiter/sambamba/issues/137/comments","events_url":"https://api.github.com/repos/lomereiter/sambamba/issues/137/events","html_url":"https://github.com/lomereiter/sambamba/issues/137","id":70251340,"number":137,"title":"SAM to uncompressed BAM with ~3000 contigs","user":{"login":"cc2qe","id":3903682,"avatar_url":"https://avatars.githubusercontent.com/u/3903682?v=3","gravatar_id":"","url":"https://api.github.com/users/cc2qe","html_url":"https://github.com/cc2qe","followers_url":"https://api.github.com/users/cc2qe/followers","following_url":"https://api.github.com/users/cc2qe/following{/other_user}","gists_url":"https://api.github.com/users/cc2qe/gists{/gist_id}","starred_url":"https://api.github.com/users/cc2qe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cc2qe/subscriptions","organizations_url":"https://api.github.com/users/cc2qe/orgs","repos_url":"https://api.github.com/users/cc2qe/repos","events_url":"https://api.github.com/users/cc2qe/events{/privacy}","received_events_url":"https://api.github.com/users/cc2qe/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-04-22T22:27:20Z","updated_at":"2015-04-23T08:45:53Z","closed_at":"2015-04-23T08:45:53Z","body":"On a SAM file with ~3000 contigs, Sambamba has problems converting a SAM file to uncompressed BAM. I've made a small example: http://colbychiang.com/hall/tmp/b.sam\r\n\r\n```bash\r\n$ sambamba_v0.5.4 view -S -f bam -l 0 b.sam  > b.bam\r\nsambamba-view: [zlib] unknown error\r\n```\r\n\r\nThanks,\r\nColby"}}