{"action":"closed","number":11,"pull_request":{"url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/11","id":38662748,"html_url":"https://github.com/PacificBiosciences/pbdagcon/pull/11","diff_url":"https://github.com/PacificBiosciences/pbdagcon/pull/11.diff","patch_url":"https://github.com/PacificBiosciences/pbdagcon/pull/11.patch","issue_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues/11","number":11,"state":"closed","locked":false,"title":"GCC 4.8/std::thread bug workaround","user":{"login":"pbjd","id":3867964,"avatar_url":"https://avatars.githubusercontent.com/u/3867964?v=3","gravatar_id":"","url":"https://api.github.com/users/pbjd","html_url":"https://github.com/pbjd","followers_url":"https://api.github.com/users/pbjd/followers","following_url":"https://api.github.com/users/pbjd/following{/other_user}","gists_url":"https://api.github.com/users/pbjd/gists{/gist_id}","starred_url":"https://api.github.com/users/pbjd/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pbjd/subscriptions","organizations_url":"https://api.github.com/users/pbjd/orgs","repos_url":"https://api.github.com/users/pbjd/repos","events_url":"https://api.github.com/users/pbjd/events{/privacy}","received_events_url":"https://api.github.com/users/pbjd/received_events","type":"User","site_admin":false},"body":"https://bugs.launchpad.net/ubuntu/+source/gcc-defaults/+bug/1228201\r\n\r\nThis was causing statically compiled pbdagcon into a runtime segfault when running with one thread.\r\n...\r\n2015-06-26 08:05:43,255 DEBUG [Reader] [jdrake@unknown-host] [FUNCTION] [FILE:0] Consensus candidate: Backbone_1\r\n2015-06-26 08:05:43,255 FATAL [default] CRASH HANDLED; Application has crashed due to [SIGSEGV] signal\r\n2015-06-26 08:05:43,255 WARN  [default] Aborting application. Reason: Fatal log at [third-party/easylogging++.h:5583]\r\n\r\nMultiple threads resulted in this:\r\n\r\nterminate called after throwing an instance of 'std::system_error'\r\n  what():  Enable multithreading to use std::thread: Operation not permitted\r\n ","created_at":"2015-06-26T15:50:49Z","updated_at":"2015-06-26T15:54:32Z","closed_at":"2015-06-26T15:54:32Z","merged_at":"2015-06-26T15:54:32Z","merge_commit_sha":"edf16ddd64d65c6e0f04f9ad07e331a2660759f0","assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/11/commits","review_comments_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/11/comments","review_comment_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/comments{/number}","comments_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues/11/comments","statuses_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/statuses/f59e90b43ad9cec3d397c6d76ee240c61e511b7f","head":{"label":"pbjd:master","ref":"master","sha":"f59e90b43ad9cec3d397c6d76ee240c61e511b7f","user":{"login":"pbjd","id":3867964,"avatar_url":"https://avatars.githubusercontent.com/u/3867964?v=3","gravatar_id":"","url":"https://api.github.com/users/pbjd","html_url":"https://github.com/pbjd","followers_url":"https://api.github.com/users/pbjd/followers","following_url":"https://api.github.com/users/pbjd/following{/other_user}","gists_url":"https://api.github.com/users/pbjd/gists{/gist_id}","starred_url":"https://api.github.com/users/pbjd/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pbjd/subscriptions","organizations_url":"https://api.github.com/users/pbjd/orgs","repos_url":"https://api.github.com/users/pbjd/repos","events_url":"https://api.github.com/users/pbjd/events{/privacy}","received_events_url":"https://api.github.com/users/pbjd/received_events","type":"User","site_admin":false},"repo":{"id":36749442,"name":"pbdagcon","full_name":"pbjd/pbdagcon","owner":{"login":"pbjd","id":3867964,"avatar_url":"https://avatars.githubusercontent.com/u/3867964?v=3","gravatar_id":"","url":"https://api.github.com/users/pbjd","html_url":"https://github.com/pbjd","followers_url":"https://api.github.com/users/pbjd/followers","following_url":"https://api.github.com/users/pbjd/following{/other_user}","gists_url":"https://api.github.com/users/pbjd/gists{/gist_id}","starred_url":"https://api.github.com/users/pbjd/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pbjd/subscriptions","organizations_url":"https://api.github.com/users/pbjd/orgs","repos_url":"https://api.github.com/users/pbjd/repos","events_url":"https://api.github.com/users/pbjd/events{/privacy}","received_events_url":"https://api.github.com/users/pbjd/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/pbjd/pbdagcon","description":"A sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment","fork":true,"url":"https://api.github.com/repos/pbjd/pbdagcon","forks_url":"https://api.github.com/repos/pbjd/pbdagcon/forks","keys_url":"https://api.github.com/repos/pbjd/pbdagcon/keys{/key_id}","collaborators_url":"https://api.github.com/repos/pbjd/pbdagcon/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/pbjd/pbdagcon/teams","hooks_url":"https://api.github.com/repos/pbjd/pbdagcon/hooks","issue_events_url":"https://api.github.com/repos/pbjd/pbdagcon/issues/events{/number}","events_url":"https://api.github.com/repos/pbjd/pbdagcon/events","assignees_url":"https://api.github.com/repos/pbjd/pbdagcon/assignees{/user}","branches_url":"https://api.github.com/repos/pbjd/pbdagcon/branches{/branch}","tags_url":"https://api.github.com/repos/pbjd/pbdagcon/tags","blobs_url":"https://api.github.com/repos/pbjd/pbdagcon/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/pbjd/pbdagcon/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/pbjd/pbdagcon/git/refs{/sha}","trees_url":"https://api.github.com/repos/pbjd/pbdagcon/git/trees{/sha}","statuses_url":"https://api.github.com/repos/pbjd/pbdagcon/statuses/{sha}","languages_url":"https://api.github.com/repos/pbjd/pbdagcon/languages","stargazers_url":"https://api.github.com/repos/pbjd/pbdagcon/stargazers","contributors_url":"https://api.github.com/repos/pbjd/pbdagcon/contributors","subscribers_url":"https://api.github.com/repos/pbjd/pbdagcon/subscribers","subscription_url":"https://api.github.com/repos/pbjd/pbdagcon/subscription","commits_url":"https://api.github.com/repos/pbjd/pbdagcon/commits{/sha}","git_commits_url":"https://api.github.com/repos/pbjd/pbdagcon/git/commits{/sha}","comments_url":"https://api.github.com/repos/pbjd/pbdagcon/comments{/number}","issue_comment_url":"https://api.github.com/repos/pbjd/pbdagcon/issues/comments{/number}","contents_url":"https://api.github.com/repos/pbjd/pbdagcon/contents/{+path}","compare_url":"https://api.github.com/repos/pbjd/pbdagcon/compare/{base}...{head}","merges_url":"https://api.github.com/repos/pbjd/pbdagcon/merges","archive_url":"https://api.github.com/repos/pbjd/pbdagcon/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/pbjd/pbdagcon/downloads","issues_url":"https://api.github.com/repos/pbjd/pbdagcon/issues{/number}","pulls_url":"https://api.github.com/repos/pbjd/pbdagcon/pulls{/number}","milestones_url":"https://api.github.com/repos/pbjd/pbdagcon/milestones{/number}","notifications_url":"https://api.github.com/repos/pbjd/pbdagcon/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/pbjd/pbdagcon/labels{/name}","releases_url":"https://api.github.com/repos/pbjd/pbdagcon/releases{/id}","created_at":"2015-06-02T17:24:34Z","updated_at":"2015-06-02T17:25:11Z","pushed_at":"2015-06-26T15:42:12Z","git_url":"git://github.com/pbjd/pbdagcon.git","ssh_url":"git@github.com:pbjd/pbdagcon.git","clone_url":"https://github.com/pbjd/pbdagcon.git","svn_url":"https://github.com/pbjd/pbdagcon","homepage":"","size":1295,"stargazers_count":0,"watchers_count":0,"language":"C","has_issues":false,"has_downloads":true,"has_wiki":false,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"PacificBiosciences:master","ref":"master","sha":"36771cf26ff94fb80475ff6c513e245811ba95bb","user":{"login":"PacificBiosciences","id":999745,"avatar_url":"https://avatars.githubusercontent.com/u/999745?v=3","gravatar_id":"","url":"https://api.github.com/users/PacificBiosciences","html_url":"https://github.com/PacificBiosciences","followers_url":"https://api.github.com/users/PacificBiosciences/followers","following_url":"https://api.github.com/users/PacificBiosciences/following{/other_user}","gists_url":"https://api.github.com/users/PacificBiosciences/gists{/gist_id}","starred_url":"https://api.github.com/users/PacificBiosciences/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/PacificBiosciences/subscriptions","organizations_url":"https://api.github.com/users/PacificBiosciences/orgs","repos_url":"https://api.github.com/users/PacificBiosciences/repos","events_url":"https://api.github.com/users/PacificBiosciences/events{/privacy}","received_events_url":"https://api.github.com/users/PacificBiosciences/received_events","type":"Organization","site_admin":false},"repo":{"id":8566157,"name":"pbdagcon","full_name":"PacificBiosciences/pbdagcon","owner":{"login":"PacificBiosciences","id":999745,"avatar_url":"https://avatars.githubusercontent.com/u/999745?v=3","gravatar_id":"","url":"https://api.github.com/users/PacificBiosciences","html_url":"https://github.com/PacificBiosciences","followers_url":"https://api.github.com/users/PacificBiosciences/followers","following_url":"https://api.github.com/users/PacificBiosciences/following{/other_user}","gists_url":"https://api.github.com/users/PacificBiosciences/gists{/gist_id}","starred_url":"https://api.github.com/users/PacificBiosciences/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/PacificBiosciences/subscriptions","organizations_url":"https://api.github.com/users/PacificBiosciences/orgs","repos_url":"https://api.github.com/users/PacificBiosciences/repos","events_url":"https://api.github.com/users/PacificBiosciences/events{/privacy}","received_events_url":"https://api.github.com/users/PacificBiosciences/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/PacificBiosciences/pbdagcon","description":"A sequence consensus algorithm implementation based on using directed acyclic graphs to encode multiple sequence alignment","fork":false,"url":"https://api.github.com/repos/PacificBiosciences/pbdagcon","forks_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/forks","keys_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/keys{/key_id}","collaborators_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/teams","hooks_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/hooks","issue_events_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues/events{/number}","events_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/events","assignees_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/assignees{/user}","branches_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/branches{/branch}","tags_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/tags","blobs_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/git/refs{/sha}","trees_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/git/trees{/sha}","statuses_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/statuses/{sha}","languages_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/languages","stargazers_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/stargazers","contributors_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/contributors","subscribers_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/subscribers","subscription_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/subscription","commits_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/commits{/sha}","git_commits_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/git/commits{/sha}","comments_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/comments{/number}","issue_comment_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues/comments{/number}","contents_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/contents/{+path}","compare_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/compare/{base}...{head}","merges_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/merges","archive_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/downloads","issues_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues{/number}","pulls_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls{/number}","milestones_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/milestones{/number}","notifications_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/labels{/name}","releases_url":"https://api.github.com/repos/PacificBiosciences/pbdagcon/releases{/id}","created_at":"2013-03-04T22:09:05Z","updated_at":"2015-06-23T18:17:40Z","pushed_at":"2015-06-26T15:54:32Z","git_url":"git://github.com/PacificBiosciences/pbdagcon.git","ssh_url":"git@github.com:PacificBiosciences/pbdagcon.git","clone_url":"https://github.com/PacificBiosciences/pbdagcon.git","svn_url":"https://github.com/PacificBiosciences/pbdagcon","homepage":"","size":1547,"stargazers_count":14,"watchers_count":14,"language":"C","has_issues":false,"has_downloads":true,"has_wiki":false,"has_pages":false,"forks_count":11,"mirror_url":null,"open_issues_count":1,"forks":11,"open_issues":1,"watchers":14,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/11"},"html":{"href":"https://github.com/PacificBiosciences/pbdagcon/pull/11"},"issue":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues/11"},"comments":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/issues/11/comments"},"review_comments":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/11/comments"},"review_comment":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/pulls/11/commits"},"statuses":{"href":"https://api.github.com/repos/PacificBiosciences/pbdagcon/statuses/f59e90b43ad9cec3d397c6d76ee240c61e511b7f"}},"merged":true,"mergeable":null,"mergeable_state":"unknown","merged_by":{"login":"pbjd","id":3867964,"avatar_url":"https://avatars.githubusercontent.com/u/3867964?v=3","gravatar_id":"","url":"https://api.github.com/users/pbjd","html_url":"https://github.com/pbjd","followers_url":"https://api.github.com/users/pbjd/followers","following_url":"https://api.github.com/users/pbjd/following{/other_user}","gists_url":"https://api.github.com/users/pbjd/gists{/gist_id}","starred_url":"https://api.github.com/users/pbjd/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pbjd/subscriptions","organizations_url":"https://api.github.com/users/pbjd/orgs","repos_url":"https://api.github.com/users/pbjd/repos","events_url":"https://api.github.com/users/pbjd/events{/privacy}","received_events_url":"https://api.github.com/users/pbjd/received_events","type":"User","site_admin":false},"comments":0,"review_comments":0,"commits":1,"additions":2,"deletions":2,"changed_files":1}}