{"action":"opened","issue":{"url":"https://api.github.com/repos/nmdp-bioinformatics/ngs/issues/199","labels_url":"https://api.github.com/repos/nmdp-bioinformatics/ngs/issues/199/labels{/name}","comments_url":"https://api.github.com/repos/nmdp-bioinformatics/ngs/issues/199/comments","events_url":"https://api.github.com/repos/nmdp-bioinformatics/ngs/issues/199/events","html_url":"https://github.com/nmdp-bioinformatics/ngs/issues/199","id":99468090,"number":199,"title":"IOException thrown in ngs-interleave-fastq should report file and line number of error","user":{"login":"heuermh","id":35293,"avatar_url":"https://avatars.githubusercontent.com/u/35293?v=3","gravatar_id":"","url":"https://api.github.com/users/heuermh","html_url":"https://github.com/heuermh","followers_url":"https://api.github.com/users/heuermh/followers","following_url":"https://api.github.com/users/heuermh/following{/other_user}","gists_url":"https://api.github.com/users/heuermh/gists{/gist_id}","starred_url":"https://api.github.com/users/heuermh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/heuermh/subscriptions","organizations_url":"https://api.github.com/users/heuermh/orgs","repos_url":"https://api.github.com/users/heuermh/repos","events_url":"https://api.github.com/users/heuermh/events{/privacy}","received_events_url":"https://api.github.com/users/heuermh/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-08-06T15:57:48Z","updated_at":"2015-08-06T15:57:48Z","closed_at":null,"body":"```bash\r\n$ ngs-interleave-fastq -1 input.1 -2 input.2 \\\r\n  -p hla_sample_5.paired.fq.gz -u hla_sample_5.unpaired.fq.gz\r\n\r\n...\r\n  java.io.IOException: java.io.IOException: description must begin with a '@' character\r\n      at org.nmdp.ngs.reads.paired.PairedEndFastqReader.streamPaired(PairedEndFastqReader.java:232)\r\n      at org.nmdp.ngs.reads.paired.PairedEndFastqReader.streamPaired(PairedEndFastqReader.java:168)\r\n      at org.nmdp.ngs.tools.InterleaveFastq.call(InterleaveFastq.java:102)\r\n      at org.nmdp.ngs.tools.InterleaveFastq.main(InterleaveFastq.java:198)\r\n  Caused by: java.io.IOException: description must begin with a '@' character\r\n      at org.biojava.bio.program.fastq.FastqParser$FastqParserLineProcessor.processLine(FastqParser.java:139)\r\n      at com.google.common.io.CharStreams.readLines(CharStreams.java:144)\r\n```"}}