{"action":"opened","number":13,"pull_request":{"url":"https://api.github.com/repos/DCGenomics/seqr/pulls/13","id":41821624,"html_url":"https://github.com/DCGenomics/seqr/pull/13","diff_url":"https://github.com/DCGenomics/seqr/pull/13.diff","patch_url":"https://github.com/DCGenomics/seqr/pull/13.patch","issue_url":"https://api.github.com/repos/DCGenomics/seqr/issues/13","number":13,"state":"open","locked":false,"title":"Working Embedded Solr","user":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"body":"Deleted old EmbeddedSolr/ directory.\r\nBasic (working) test of Lianyi's Solr Configuration\r\n\r\n```bash\r\nmichaelpanciera@michaelpanciera-Lenovo-Z580:~/clones/seqr_hackathon_v002$ mvn clean test\r\n[INFO] Scanning for projects...\r\n[INFO]                                                                         \r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] Building seqr-application 4.10.4-SNAPSHOT\r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] \r\n[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ seqr ---\r\n[INFO] Deleting /home/michaelpanciera/clones/seqr_hackathon_v002/target\r\n[INFO] \r\n[INFO] --- maven-resources-plugin:2.3:resources (default-resources) @ seqr ---\r\n[INFO] Using 'UTF-8' encoding to copy filtered resources.\r\n[INFO] Copying 1 resource\r\n[INFO] \r\n[INFO] --- maven-compiler-plugin:2.0.2:compile (default-compile) @ seqr ---\r\n[INFO] Compiling 8 source files to /home/michaelpanciera/clones/seqr_hackathon_v002/target/classes\r\n[WARNING] /home/michaelpanciera/clones/seqr_hackathon_v002/src/main/java/gov/nih/nlm/ncbi/seqr/solr/SeqrController.java:[2,51] Mod is internal proprietary API and may be removed in a future release\r\n\r\n[INFO] \r\n[INFO] --- maven-resources-plugin:2.3:testResources (default-testResources) @ seqr ---\r\n[INFO] Using 'UTF-8' encoding to copy filtered resources.\r\n[INFO] skip non existing resourceDirectory /home/michaelpanciera/clones/seqr_hackathon_v002/src/test/resources\r\n[INFO] \r\n[INFO] --- maven-compiler-plugin:2.0.2:testCompile (default-testCompile) @ seqr ---\r\n[INFO] Compiling 1 source file to /home/michaelpanciera/clones/seqr_hackathon_v002/target/test-classes\r\n[INFO] \r\n[INFO] --- maven-surefire-plugin:2.10:test (default-test) @ seqr ---\r\n[INFO] Surefire report directory: /home/michaelpanciera/clones/seqr_hackathon_v002/target/surefire-reports\r\n\r\n-------------------------------------------------------\r\n T E S T S\r\n-------------------------------------------------------\r\nRunning gov.nih.nlm.ncbi.seqr.TestMain\r\nSLF4J: Class path contains multiple SLF4J bindings.\r\nSLF4J: Found binding in [jar:file:/home/michaelpanciera/.m2/repository/org/slf4j/slf4j-log4j12/1.7.1/slf4j-log4j12-1.7.1.jar!/org/slf4j/impl/StaticLoggerBinder.class]\r\nSLF4J: Found binding in [jar:file:/home/michaelpanciera/.m2/repository/org/apache/logging/log4j/log4j-slf4j-impl/2.2/log4j-slf4j-impl-2.2.jar!/org/slf4j/impl/StaticLoggerBinder.class]\r\nSLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.\r\nSLF4J: Actual binding is of type [org.slf4j.impl.Log4jLoggerFactory]\r\nlog4j:WARN No appenders could be found for logger (org.apache.solr.core.SolrResourceLoader).\r\nlog4j:WARN Please initialize the log4j system properly.\r\nlog4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.\r\nloading sequences.json....\r\nSolrDocument{id=131090, acxn=P00744, taxid=9913, blastname=even-toed ungulates, sciname=Bos taurus, defline=RecName: Full=Vitamin K-dependent protein Z , seqlen=396, sequence=AGSYLLEELFEGHLEKECWEEICVYEEAREVFEDDETTDEFWRTYMGGSPCASQPCLNNGSCQDSIRGYACTCAPGYEGPNCAFAESECHPLRLDGCQHFCYPGPESYTCSCARGHKLGQDRRSCLPHDRCACGTLGPECCQRPQGSQQNLLPFPWQVKLTNSEGKDFCGGVLIQDNFVLTTATCSLLYANISVKTRSHFRLHVRGVHVHTRFEADTGHNDVALLDLARPVRCPDAGRPVCTADADFADSVLLPQPGVLGGWTLRGREMVPLRLRVTHVEPAECGRALNATVTTRTSCERGAAAGAARWVAGGAVVREHRGAWFLTGLLGAAPPEGPGPLLLIKVPRYALWLRQVTQQPSRASPRGDRGQGRDGEPVPGDRGGRWAPTALPPGPLV, geneid=617946, genesymbol=PROZ, md5=3d2c1c0ef5b945aeea58ff45a0dd2fd3, matchlen=392, _version_=1508781336035328000}\r\nTests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.981 sec\r\n\r\nResults :\r\n\r\nTests run: 1, Failures: 0, Errors: 0, Skipped: 0\r\n\r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] BUILD SUCCESS\r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] Total time: 7.170s\r\n[INFO] Finished at: Thu Aug 06 14:33:30 EDT 2015\r\n[INFO] Final Memory: 34M/217M\r\n[INFO] ------------------------------------------------------------------------\r\n````","created_at":"2015-08-06T18:52:07Z","updated_at":"2015-08-06T18:52:07Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/DCGenomics/seqr/pulls/13/commits","review_comments_url":"https://api.github.com/repos/DCGenomics/seqr/pulls/13/comments","review_comment_url":"https://api.github.com/repos/DCGenomics/seqr/pulls/comments{/number}","comments_url":"https://api.github.com/repos/DCGenomics/seqr/issues/13/comments","statuses_url":"https://api.github.com/repos/DCGenomics/seqr/statuses/b4c6c78840a99774ccff58d1d74c68f50c643ea3","head":{"label":"averagehat:master","ref":"master","sha":"b4c6c78840a99774ccff58d1d74c68f50c643ea3","user":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"repo":{"id":40141058,"name":"seqr_hackathon_v002","full_name":"averagehat/seqr_hackathon_v002","owner":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/averagehat/seqr_hackathon_v002","description":"","fork":true,"url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002","forks_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/forks","keys_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/keys{/key_id}","collaborators_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/teams","hooks_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/hooks","issue_events_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/issues/events{/number}","events_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/events","assignees_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/assignees{/user}","branches_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/branches{/branch}","tags_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/tags","blobs_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/git/refs{/sha}","trees_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/git/trees{/sha}","statuses_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/statuses/{sha}","languages_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/languages","stargazers_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/stargazers","contributors_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/contributors","subscribers_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/subscribers","subscription_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/subscription","commits_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/commits{/sha}","git_commits_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/git/commits{/sha}","comments_url":"https://api.github.com/repos/averagehat/seqr_hackathon_v002/comments{/number}","issue_comment_url":"https://api.gi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