{"action":"created","issue":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1872","labels_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1872/labels{/name}","comments_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1872/comments","events_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1872/events","html_url":"https://github.com/Homebrew/homebrew-science/pull/1872","id":58660884,"number":1872,"title":"BEDOPS 2.4.10","user":{"login":"alexpreynolds","id":33584,"avatar_url":"https://avatars.githubusercontent.com/u/33584?v=3","gravatar_id":"","url":"https://api.github.com/users/alexpreynolds","html_url":"https://github.com/alexpreynolds","followers_url":"https://api.github.com/users/alexpreynolds/followers","following_url":"https://api.github.com/users/alexpreynolds/following{/other_user}","gists_url":"https://api.github.com/users/alexpreynolds/gists{/gist_id}","starred_url":"https://api.github.com/users/alexpreynolds/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexpreynolds/subscriptions","organizations_url":"https://api.github.com/users/alexpreynolds/orgs","repos_url":"https://api.github.com/users/alexpreynolds/repos","events_url":"https://api.github.com/users/alexpreynolds/events{/privacy}","received_events_url":"https://api.github.com/users/alexpreynolds/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/Bioinformatics","name":"Bioinformatics","color":"207de5"},{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/New%20version","name":"New version","color":"009800"},{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/wait%20for%20response","name":"wait for response","color":"0b02e1"}],"state":"closed","locked":false,"assignee":{"login":"sjackman","id":291551,"avatar_url":"https://avatars.githubusercontent.com/u/291551?v=3","gravatar_id":"","url":"https://api.github.com/users/sjackman","html_url":"https://github.com/sjackman","followers_url":"https://api.github.com/users/sjackman/followers","following_url":"https://api.github.com/users/sjackman/following{/other_user}","gists_url":"https://api.github.com/users/sjackman/gists{/gist_id}","starred_url":"https://api.github.com/users/sjackman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sjackman/subscriptions","organizations_url":"https://api.github.com/users/sjackman/orgs","repos_url":"https://api.github.com/users/sjackman/repos","events_url":"https://api.github.com/users/sjackman/events{/privacy}","received_events_url":"https://api.github.com/users/sjackman/received_events","type":"User","site_admin":false},"milestone":null,"comments":2,"created_at":"2015-02-23T22:33:04Z","updated_at":"2015-02-24T21:05:50Z","closed_at":"2015-02-24T20:02:09Z","pull_request":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/1872","html_url":"https://github.com/Homebrew/homebrew-science/pull/1872","diff_url":"https://github.com/Homebrew/homebrew-science/pull/1872.diff","patch_url":"https://github.com/Homebrew/homebrew-science/pull/1872.patch"},"body":"``starch``\r\n\r\n* Enforces ``sort-bed`` sort ordering on BED input and exits with ``EINVAL`` error if data are not sorted correctly.\r\n\r\n``convert2bed``\r\n\r\n* Added ``--zero-indexed`` option to ``wig2bed`` and ``wig2starch`` wrappers and ``convert2bed`` binary, which converts WIG data that are zero-indexed without any coordinate adjustments. This is useful for WIG data sourced from the UCSC Kent tool ``bigWigToWig``, where the bigWig data can potentially be sourced from 0-indexed BAM- or bedGraph-formatted data.\r\n\r\n* If the WIG input contains any element with a start coordinate of 0, the default use of ``wig2bed``, ``wig2starch`` and ``convert2bed`` will exit early with an error condition, suggesting the use of ``--zero-indexed``.\r\n\r\n* Updated copyright date range of wrapper scripts"},"comment":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/comments/75845809","html_url":"https://github.com/Homebrew/homebrew-science/pull/1872#issuecomment-75845809","issue_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1872","id":75845809,"user":{"login":"sjackman","id":291551,"avatar_url":"https://avatars.githubusercontent.com/u/291551?v=3","gravatar_id":"","url":"https://api.github.com/users/sjackman","html_url":"https://github.com/sjackman","followers_url":"https://api.github.com/users/sjackman/followers","following_url":"https://api.github.com/users/sjackman/following{/other_user}","gists_url":"https://api.github.com/users/sjackman/gists{/gist_id}","starred_url":"https://api.github.com/users/sjackman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sjackman/subscriptions","organizations_url":"https://api.github.com/users/sjackman/orgs","repos_url":"https://api.github.com/users/sjackman/repos","events_url":"https://api.github.com/users/sjackman/events{/privacy}","received_events_url":"https://api.github.com/users/sjackman/received_events","type":"User","site_admin":false},"created_at":"2015-02-24T21:05:50Z","updated_at":"2015-02-24T21:05:50Z","body":"@alexpreynolds There's no need to close this PR and open a new one. It's better to update the PR like so:\r\n```sh\r\ngit checkout bedops-v2p4p10\r\ngit commit --amend bedops.rb\r\ngit push --force alexpreynolds bedops-v2p4p10\r\n```"}}