{"action":"created","comment":{"url":"https://api.github.com/repos/openmicroscopy/ome-help/pulls/comments/48017060","id":48017060,"diff_hunk":"@@ -0,0 +1,806 @@\n+---\n+layout: default\n+title: Using OMERO for Facility Managers\n+menu-id: l1-workflow2\n+pdfs:\n+    - facility-manager.pdf\n+description: Descriptions of common workflows for Facility Managers and links to useful sections of User Help and Developer documentation.\n+version:\n+    - yes\n+---\n+<div class=\"page-navigation\">\n+<h2>Contents</h2>\n+<p>\n+<a href=\"#introduction\">Introduction</a><br />\n+<a href=\"#using\">Using OMERO</a><br />\n+<a href=\"#permissions\">Permissions on OMERO</a><br />\n+<a href=\"#access\">Access control, authentication, user accounts</a><br />\n+<a href=\"#manage\">Managing Groups</a><br />\n+<a href=\"#import\">Importing</a><br />\n+<a href=\"#data\">Data structure</a><br />\n+<a href=\"#measure\">Measurement and analysis</a><br />\n+<a href=\"#disk\">Disk usage</a><br />\n+<a href=\"#email\">Emailing users</a><br />\n+<a href=\"#upgrade\">Upgrading</a><br />\n+<a href=\"#publish\">Using OMERO for publication</a><br />\n+<a href=\"#training\">Getting users started</a>\n+</p>\n+</div><!-- End Page Navigation -->\n+\n+<div class=\"line-block\">\n+<div class=\"line\"><br /></div>\n+</div>\n+\n+<h2><a class=\"anchor\" id=\"introduction\"></a>Introduction</h2>\n+\n+<p>This section brings together descriptions of common workflows for Facility Managers and links to useful sections of User Help and technical documentation.</p>\n+\n+<h2><a class=\"anchor\" id=\"install\"></a>Installation and configuration</h2>\n+\n+<p>Documentation covering the installation and configuration of the OMERO server is in the <a href=\"http://www.openmicroscopy.org/site/support/omero5.2/sysadmins/index.html\" target=\"_blank\" class=\"external-url\">System Administrator</a> documentation on the main OME website.</p>\n+\n+<h2>Specifications for hardware</h2>\n+\n+<p>This is a frequently asked question, and the simplistic (if slightly unhelpful) answer is the best you can manage.</p>\n+\n+<p>Apart from basic CPU number, speed and physical disk size, there are a number of other issues to be taken into account, including the nature of the storage being used for the data, the connection type, and the speed of the network used to access the server.</p>\n+\n+<p>Examples of system specifications and set-ups for production OMERO servers have kindly been provided by a number of institutes to serve as illustrations of working systems. These are shown in the <a href=\"http://www.openmicroscopy.org/site/support/omero5.2-staging/sysadmins/server-setup-examples.html\" target=\"_blank\" class=\"external-url\">Example production server set-ups</a> page on the OME website.</p>\n+\n+<p class=\"top_link\"><a href=\"#top\"><img src=\"images/back_to_top.png\" alt=\"Image for link to top of page\" style=\"float: right;\"/></a></p>\n+\n+<div class=\"line-block\">\n+<div class=\"line\"><br /></div> <!-- end #line -->\n+</div> <!-- end #line-block -->\n+\n+<h2><a class=\"anchor\" id=\"using\"></a>Using OMERO</h2>\n+\n+<p>Details on downloading the OMERO clients and accessing the OMERO server are in <a href=\"http://help.openmicroscopy.org/getting-started-5.html\" target=\"_blank\" class=\"external-url\">Getting Started with OMERO</a> in User Help.</p>\n+\n+<p>Details on accessing OMERO with the OMERO.web client are in the <a href=\"http://help.openmicroscopy.org/web-client.html\" target=\"_blank\" class=\"external-url\">Using the OMERO.web Client</a> section of User Help.</p>\n+\n+<p>Details of the command line interface <a href=\"http://www.openmicroscopy.org/site/support/omero5.2/users/cli/index.html\" target=\"_blank\" class=\"external-url\">OMERO.cli</a> are in the OME documentation.</p>\n+\n+<div class=\"line-block\">\n+<div class=\"line\"><br /></div> <!-- end #line -->\n+</div> <!-- end #line-block -->\n+\n+<h2><a class=\"anchor\" id=\"permissions\"></a>Permissions on OMERO</h2>\n+\n+<p>There are three levels of user permission in OMERO, Administrator, Group Owner and Member. Each level of permission allows different actions to be performed on a user's own, or other user's data, and certain administrative tasks.</p>\n+\n+<p>In brief, and practically speaking, Administrators can do anything they like to any user's data, in any group (except annotate in Private groups) and Group Owners can do anything to any user's data in the groups they own.</p>\n+\n+<p>Full details of the permissions for each level of user are shown in the <a href=\"http://help.openmicroscopy.org/sharing-data.html#roles\" target=\"_blank\" class=\"external-url\">User Roles</a> table in the Sharing data section of User Help.</p>\n+\n+<div class=\"line-block\">\n+<div class=\"line\"><br /></div> <!-- end #line -->\n+</div> <!-- end #line-block -->\n+\n+<h2><a class=\"anchor\" id=\"access\"></a>Access control, authentication, user accounts</h2>\n+\n+<p>The recommended way to control access to the OMERO server is to configure integration with your institute's authentication system (most commonly LDAP).</p>\n+\n+<p>See the documentation for <a href=\"http://www.openmicroscopy.org/site/support/omero5.2/sysadmins/server-ldap.html\" target=\"_blank\" class=\"external-url\">LDAP configuration</a> for details. Instructions for using Active Directory are at the bottom of this page.</p>\n+\n+<p>Using LDAP authentication means new user accounts are created, and the user placed in the default group, the first time a user logs in, substantially reducing the administration load. Any change in the LDAP password by the user will then be reflected in the OMERO login.</p>\n+\n+<p>With LDAP authentication configured, an administrator can still create new accounts for non-LDAP users. 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