{"action":"created","issue":{"url":"https://api.github.com/repos/veg/hyphy/issues/302","labels_url":"https://api.github.com/repos/veg/hyphy/issues/302/labels{/name}","comments_url":"https://api.github.com/repos/veg/hyphy/issues/302/comments","events_url":"https://api.github.com/repos/veg/hyphy/issues/302/events","html_url":"https://github.com/veg/hyphy/issues/302","id":86714747,"number":302,"title":"MPI environment missing","user":{"login":"bpfeffer","id":10350312,"avatar_url":"https://avatars.githubusercontent.com/u/10350312?v=3","gravatar_id":"","url":"https://api.github.com/users/bpfeffer","html_url":"https://github.com/bpfeffer","followers_url":"https://api.github.com/users/bpfeffer/followers","following_url":"https://api.github.com/users/bpfeffer/following{/other_user}","gists_url":"https://api.github.com/users/bpfeffer/gists{/gist_id}","starred_url":"https://api.github.com/users/bpfeffer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bpfeffer/subscriptions","organizations_url":"https://api.github.com/users/bpfeffer/orgs","repos_url":"https://api.github.com/users/bpfeffer/repos","events_url":"https://api.github.com/users/bpfeffer/events{/privacy}","received_events_url":"https://api.github.com/users/bpfeffer/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"stevenweaver","id":535261,"avatar_url":"https://avatars.githubusercontent.com/u/535261?v=3","gravatar_id":"","url":"https://api.github.com/users/stevenweaver","html_url":"https://github.com/stevenweaver","followers_url":"https://api.github.com/users/stevenweaver/followers","following_url":"https://api.github.com/users/stevenweaver/following{/other_user}","gists_url":"https://api.github.com/users/stevenweaver/gists{/gist_id}","starred_url":"https://api.github.com/users/stevenweaver/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stevenweaver/subscriptions","organizations_url":"https://api.github.com/users/stevenweaver/orgs","repos_url":"https://api.github.com/users/stevenweaver/repos","events_url":"https://api.github.com/users/stevenweaver/events{/privacy}","received_events_url":"https://api.github.com/users/stevenweaver/received_events","type":"User","site_admin":false},"milestone":null,"comments":3,"created_at":"2015-06-09T19:49:41Z","updated_at":"2015-06-09T20:24:13Z","closed_at":null,"body":"I'm trying to run HYPHYMPI with GARD and we have openmpi as our MPI, when I try to run this with mpirun I get [ERROR] This analysis requires an MPI enviroment to run\"\r\n\r\nI've tried using:\r\n```\r\nmpirun -np 8 HYPHYMPI /usr/local/lib/hyphy/TemplateBatchFiles/GARD/bf\r\n```\r\nAlong with just trying mpirun with HYPHYMPI and it always comes down to that error. I know MPI works because I use mpiexec with Ray all the time. I figured I'd try this with mpiexec and got the same message. Thanks in advance for any help!\r\n\r\nEdit: Details for clarity. CentOS 6.3 64-bit with latest version of hyphy and openmpi 1.5.4"},"comment":{"url":"https://api.github.com/repos/veg/hyphy/issues/comments/110494307","html_url":"https://github.com/veg/hyphy/issues/302#issuecomment-110494307","issue_url":"https://api.github.com/repos/veg/hyphy/issues/302","id":110494307,"user":{"login":"bpfeffer","id":10350312,"avatar_url":"https://avatars.githubusercontent.com/u/10350312?v=3","gravatar_id":"","url":"https://api.github.com/users/bpfeffer","html_url":"https://github.com/bpfeffer","followers_url":"https://api.github.com/users/bpfeffer/followers","following_url":"https://api.github.com/users/bpfeffer/following{/other_user}","gists_url":"https://api.github.com/users/bpfeffer/gists{/gist_id}","starred_url":"https://api.github.com/users/bpfeffer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bpfeffer/subscriptions","organizations_url":"https://api.github.com/users/bpfeffer/orgs","repos_url":"https://api.github.com/users/bpfeffer/repos","events_url":"https://api.github.com/users/bpfeffer/events{/privacy}","received_events_url":"https://api.github.com/users/bpfeffer/received_events","type":"User","site_admin":false},"created_at":"2015-06-09T20:24:12Z","updated_at":"2015-06-09T20:24:12Z","body":"Thanks for the suggestion, I installed mpich to side directory and it worked calling that version of mpirun instead."}}