{"action":"created","issue":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/421","labels_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/421/labels{/name}","comments_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/421/comments","events_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/421/events","html_url":"https://github.com/bigdatagenomics/adam/pull/421","id":45859657,"number":421,"title":"CLI & mappability filter for region join, custom exceptions","user":{"login":"tdanford","id":395608,"avatar_url":"https://avatars.githubusercontent.com/u/395608?v=3","gravatar_id":"","url":"https://api.github.com/users/tdanford","html_url":"https://github.com/tdanford","followers_url":"https://api.github.com/users/tdanford/followers","following_url":"https://api.github.com/users/tdanford/following{/other_user}","gists_url":"https://api.github.com/users/tdanford/gists{/gist_id}","starred_url":"https://api.github.com/users/tdanford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tdanford/subscriptions","organizations_url":"https://api.github.com/users/tdanford/orgs","repos_url":"https://api.github.com/users/tdanford/repos","events_url":"https://api.github.com/users/tdanford/events{/privacy}","received_events_url":"https://api.github.com/users/tdanford/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":9,"created_at":"2014-10-15T12:20:25Z","updated_at":"2015-03-17T17:09:55Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/bigdatagenomics/adam/pulls/421","html_url":"https://github.com/bigdatagenomics/adam/pull/421","diff_url":"https://github.com/bigdatagenomics/adam/pull/421.diff","patch_url":"https://github.com/bigdatagenomics/adam/pull/421.patch"},"body":"Fixes #420, #297 \r\n\r\nSeveral changes: \r\n* adding a filter for 'mappability' to the ``partitionAndJoin`` method, fixing (I hope) Christos's problem\r\n* creating a CLI tool for accessing/testing RegionJoin (and for re-creating the bug) \r\n* adding a custom exception, for throwing errors related to unmapped reads or records (see #420) \r\n* added a ``hasReferenceRegion`` to ``ReferenceMapping`` -- to explicitly check for whether a value _can_ be converted to a ReferenceRegion"},"comment":{"url":"https://api.github.com/repos/bigdatagenomics/adam/issues/comments/82484580","html_url":"https://github.com/bigdatagenomics/adam/pull/421#issuecomment-82484580","issue_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/421","id":82484580,"user":{"login":"fnothaft","id":3752466,"avatar_url":"https://avatars.githubusercontent.com/u/3752466?v=3","gravatar_id":"","url":"https://api.github.com/users/fnothaft","html_url":"https://github.com/fnothaft","followers_url":"https://api.github.com/users/fnothaft/followers","following_url":"https://api.github.com/users/fnothaft/following{/other_user}","gists_url":"https://api.github.com/users/fnothaft/gists{/gist_id}","starred_url":"https://api.github.com/users/fnothaft/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fnothaft/subscriptions","organizations_url":"https://api.github.com/users/fnothaft/orgs","repos_url":"https://api.github.com/users/fnothaft/repos","events_url":"https://api.github.com/users/fnothaft/events{/privacy}","received_events_url":"https://api.github.com/users/fnothaft/received_events","type":"User","site_admin":false},"created_at":"2015-03-17T17:09:55Z","updated_at":"2015-03-17T17:09:55Z","body":"@tdanford what's the status on this? Close and reopen later?"}}