{"action":"created","issue":{"url":"https://api.github.com/repos/bokeh/bokeh/issues/2768","labels_url":"https://api.github.com/repos/bokeh/bokeh/issues/2768/labels{/name}","comments_url":"https://api.github.com/repos/bokeh/bokeh/issues/2768/comments","events_url":"https://api.github.com/repos/bokeh/bokeh/issues/2768/events","html_url":"https://github.com/bokeh/bokeh/issues/2768","id":103135593,"number":2768,"title":"Scientific Citation ","user":{"login":"LeeBergstrand","id":5819462,"avatar_url":"https://avatars.githubusercontent.com/u/5819462?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeBergstrand","html_url":"https://github.com/LeeBergstrand","followers_url":"https://api.github.com/users/LeeBergstrand/followers","following_url":"https://api.github.com/users/LeeBergstrand/following{/other_user}","gists_url":"https://api.github.com/users/LeeBergstrand/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeBergstrand/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeBergstrand/subscriptions","organizations_url":"https://api.github.com/users/LeeBergstrand/orgs","repos_url":"https://api.github.com/users/LeeBergstrand/repos","events_url":"https://api.github.com/users/LeeBergstrand/events{/privacy}","received_events_url":"https://api.github.com/users/LeeBergstrand/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/bokeh/bokeh/labels/tag:%20docs","name":"tag: docs","color":"D0CBB8"},{"url":"https://api.github.com/repos/bokeh/bokeh/labels/type:%20task","name":"type: task","color":"872A50"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/bokeh/bokeh/milestones/11","html_url":"https://github.com/bokeh/bokeh/milestones/short-term","labels_url":"https://api.github.com/repos/bokeh/bokeh/milestones/11/labels","id":811343,"number":11,"title":"short-term","description":"Collects issues that need to be resolved soon, but not before the next release.\r\nThis milestone is always open and it gets populated from the either the long-term milestone or from new (unmilestoned) issues.\r\n\r\nRef: https://github.com/ContinuumIO/bokeh/wiki/BEP-1:-Issues-and-PRs-management#issue-times","creator":{"login":"damianavila","id":1640669,"avatar_url":"https://avatars.githubusercontent.com/u/1640669?v=3","gravatar_id":"","url":"https://api.github.com/users/damianavila","html_url":"https://github.com/damianavila","followers_url":"https://api.github.com/users/damianavila/followers","following_url":"https://api.github.com/users/damianavila/following{/other_user}","gists_url":"https://api.github.com/users/damianavila/gists{/gist_id}","starred_url":"https://api.github.com/users/damianavila/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/damianavila/subscriptions","organizations_url":"https://api.github.com/users/damianavila/orgs","repos_url":"https://api.github.com/users/damianavila/repos","events_url":"https://api.github.com/users/damianavila/events{/privacy}","received_events_url":"https://api.github.com/users/damianavila/received_events","type":"User","site_admin":false},"open_issues":260,"closed_issues":31,"state":"open","created_at":"2014-10-02T12:30:03Z","updated_at":"2015-08-25T23:09:03Z","due_on":null,"closed_at":null},"comments":5,"created_at":"2015-08-25T23:06:56Z","updated_at":"2015-08-26T20:41:52Z","closed_at":null,"body":"My lab group has recently utilized Bokeh for building plots for a recent publication. We wish to cite it. How do you recommend we cite Bokeh?"},"comment":{"url":"https://api.github.com/repos/bokeh/bokeh/issues/comments/135164819","html_url":"https://github.com/bokeh/bokeh/issues/2768#issuecomment-135164819","issue_url":"https://api.github.com/repos/bokeh/bokeh/issues/2768","id":135164819,"user":{"login":"canavandl","id":2198981,"avatar_url":"https://avatars.githubusercontent.com/u/2198981?v=3","gravatar_id":"","url":"https://api.github.com/users/canavandl","html_url":"https://github.com/canavandl","followers_url":"https://api.github.com/users/canavandl/followers","following_url":"https://api.github.com/users/canavandl/following{/other_user}","gists_url":"https://api.github.com/users/canavandl/gists{/gist_id}","starred_url":"https://api.github.com/users/canavandl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/canavandl/subscriptions","organizations_url":"https://api.github.com/users/canavandl/orgs","repos_url":"https://api.github.com/users/canavandl/repos","events_url":"https://api.github.com/users/canavandl/events{/privacy}","received_events_url":"https://api.github.com/users/canavandl/received_events","type":"User","site_admin":false},"created_at":"2015-08-26T20:41:52Z","updated_at":"2015-08-26T20:41:52Z","body":"Per @KelSolaar (the colour-science lead): \r\n\r\n\"As for Zenodo I'm doing it manually, I used the hooks once but I wasn't comfortable having that automatically trigger once you tag the master. If you screw your release for whatever reason you'll end up with a Zenodo DOI for it because of that. The other even more important reason not to do it is that (when I initially tested the stuff) you couldn't pre-reserve the DOI, meaning the DOI was never in sync with the release tag: You tag your master, Zenodo kicks in, generates a DOI for you but now your tagged version is using the DOI of the previous Zenodo upload if that makes sense.\r\n\r\nNow what I do is I pre-reserve the DOI by manually uploading a temporary release, I update the DOI in the repo, tag my master, then I upload that release to Zenodo manually and publish it.\"\r\n\r\nIt sounds like Zenodo isn't an optimal solution for Bokeh citation. For the colour project (the python implementation of a bunch of specific algorithms), being able to cite or download a specific release for reproduciblity makes the Zenodo hassle more worthwhile. I think adding a citation blurb to the README like SymPy is the better choice."}}