{"action":"created","issue":{"url":"https://api.github.com/repos/WormBase/website/issues/2900","labels_url":"https://api.github.com/repos/WormBase/website/issues/2900/labels{/name}","comments_url":"https://api.github.com/repos/WormBase/website/issues/2900/comments","events_url":"https://api.github.com/repos/WormBase/website/issues/2900/events","html_url":"https://github.com/WormBase/website/issues/2900","id":37788832,"number":2900,"title":"Selecting FPKM datasets and graphs","user":{"login":"wormbasehelp","id":3810208,"avatar_url":"https://avatars.githubusercontent.com/u/3810208?v=3","gravatar_id":"","url":"https://api.github.com/users/wormbasehelp","html_url":"https://github.com/wormbasehelp","followers_url":"https://api.github.com/users/wormbasehelp/followers","following_url":"https://api.github.com/users/wormbasehelp/following{/other_user}","gists_url":"https://api.github.com/users/wormbasehelp/gists{/gist_id}","starred_url":"https://api.github.com/users/wormbasehelp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wormbasehelp/subscriptions","organizations_url":"https://api.github.com/users/wormbasehelp/orgs","repos_url":"https://api.github.com/users/wormbasehelp/repos","events_url":"https://api.github.com/users/wormbasehelp/events{/privacy}","received_events_url":"https://api.github.com/users/wormbasehelp/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/WormBase/website/labels/data%20(new)","name":"data (new)","color":"207de5"},{"url":"https://api.github.com/repos/WormBase/website/labels/feature%20request","name":"feature request","color":"02d7e1"},{"url":"https://api.github.com/repos/WormBase/website/labels/HelpDesk","name":"HelpDesk","color":"DF7401"},{"url":"https://api.github.com/repos/WormBase/website/labels/UI-data%20display","name":"UI-data display","color":"02e10c"},{"url":"https://api.github.com/repos/WormBase/website/labels/Under%20testing","name":"Under testing","color":"e102d8"},{"url":"https://api.github.com/repos/WormBase/website/labels/Webteam","name":"Webteam","color":"a369e7"}],"state":"open","locked":false,"assignee":{"login":"khowe","id":708483,"avatar_url":"https://avatars.githubusercontent.com/u/708483?v=3","gravatar_id":"","url":"https://api.github.com/users/khowe","html_url":"https://github.com/khowe","followers_url":"https://api.github.com/users/khowe/followers","following_url":"https://api.github.com/users/khowe/following{/other_user}","gists_url":"https://api.github.com/users/khowe/gists{/gist_id}","starred_url":"https://api.github.com/users/khowe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/khowe/subscriptions","organizations_url":"https://api.github.com/users/khowe/orgs","repos_url":"https://api.github.com/users/khowe/repos","events_url":"https://api.github.com/users/khowe/events{/privacy}","received_events_url":"https://api.github.com/users/khowe/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/WormBase/website/milestones/22","html_url":"https://github.com/WormBase/website/milestones/WS247","labels_url":"https://api.github.com/repos/WormBase/website/milestones/22/labels","id":842712,"number":22,"title":"WS247","description":"","creator":{"login":"tharris","id":74888,"avatar_url":"https://avatars.githubusercontent.com/u/74888?v=3","gravatar_id":"","url":"https://api.github.com/users/tharris","html_url":"https://github.com/tharris","followers_url":"https://api.github.com/users/tharris/followers","following_url":"https://api.github.com/users/tharris/following{/other_user}","gists_url":"https://api.github.com/users/tharris/gists{/gist_id}","starred_url":"https://api.github.com/users/tharris/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tharris/subscriptions","organizations_url":"https://api.github.com/users/tharris/orgs","repos_url":"https://api.github.com/users/tharris/repos","events_url":"https://api.github.com/users/tharris/events{/privacy}","received_events_url":"https://api.github.com/users/tharris/received_events","type":"User","site_admin":false},"open_issues":74,"closed_issues":18,"state":"open","created_at":"2014-10-27T21:30:17Z","updated_at":"2015-03-28T15:35:16Z","due_on":"2015-03-28T06:00:00Z","closed_at":null},"comments":41,"created_at":"2014-07-14T14:02:22Z","updated_at":"2015-04-01T16:05:49Z","closed_at":null,"body":"Hi,  <br /><br />Is there a way to select which datasets are displayed in the bar graph under \"FPKM expression data\" in the Expression widget?  You used to show all of the datasets, but now you're only displaying one of them by default (which is not the one I want to look at).  <br /><br />Thanks!\n\nReported by: Dan ********* (ddic*****************)  (obscured for privacy)\nSubmitted From: F33G12.2%20(gene) (/species/c_elegans/gene/WBGene00018014#0e-94b1a6cd-10-a)\n\nMozilla/5.0 (Macintosh; Intel Mac OS X 10_8_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/35.0.1916.153 Safari/537.36\n\n"},"comment":{"url":"https://api.github.com/repos/WormBase/website/issues/comments/88534961","html_url":"https://github.com/WormBase/website/issues/2900#issuecomment-88534961","issue_url":"https://api.github.com/repos/WormBase/website/issues/2900","id":88534961,"user":{"login":"gw3","id":893224,"avatar_url":"https://avatars.githubusercontent.com/u/893224?v=3","gravatar_id":"","url":"https://api.github.com/users/gw3","html_url":"https://github.com/gw3","followers_url":"https://api.github.com/users/gw3/followers","following_url":"https://api.github.com/users/gw3/following{/other_user}","gists_url":"https://api.github.com/users/gw3/gists{/gist_id}","starred_url":"https://api.github.com/users/gw3/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gw3/subscriptions","organizations_url":"https://api.github.com/users/gw3/orgs","repos_url":"https://api.github.com/users/gw3/repos","events_url":"https://api.github.com/users/gw3/events{/privacy}","received_events_url":"https://api.github.com/users/gw3/received_events","type":"User","site_admin":false},"created_at":"2015-04-01T16:05:48Z","updated_at":"2015-04-01T16:05:48Z","body":"Hi Xiaodong,\n\nYes, the projects have their own control data and this is already \ndisplayed as part of the data for each project.\nThe control expression values are useful as they give the expression for \nthe gene with no special condition, but it is sometimes not easy to see \nwhich data are the controls without reading the paper.\n\nFor each gene, I have extracted all of the control data from all of the \nexperiments.\nI then worked out which of the basic life-stages the data referred to \n(embryo, L1, L2, L3, L4, adult, all stages) as often the life stage is a \nrarely-used subdivision of these basic life stages.\nWithin each basic life stage I then calculated the mean and median FPKM \nvalues.\n\nMaybe if this is not a clear set of data, it might be too confusing to \npresent to the users?\n\nGary\n\nOn 01/04/15 15:42, xdwang wrote:\n>\n> @gw3 <https://github.com/gw3> @Paul-Davis \n> <https://github.com/Paul-Davis> I would argue to list all controls in \n> their own projects plots. Shouldn't all experiments/projects have \n> their own controls? If this is the case, controls should be plotted \n> within the same projects. Or if controls are used crossed different \n> projects, it makes sense to list them in a separate common table as \n> they are now.\n>\n> —\n> Reply to this email directly or view it on GitHub \n> <https://github.com/WormBase/website/issues/2900#issuecomment-88509824>.\n>\n\n"}}