{"action":"created","issue":{"url":"https://api.github.com/repos/gschofl/HLAsim/issues/1","labels_url":"https://api.github.com/repos/gschofl/HLAsim/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/gschofl/HLAsim/issues/1/comments","events_url":"https://api.github.com/repos/gschofl/HLAsim/issues/1/events","html_url":"https://github.com/gschofl/HLAsim/issues/1","id":94257543,"number":1,"title":"Installation problem","user":{"login":"hpeberhard","id":13271222,"avatar_url":"https://avatars.githubusercontent.com/u/13271222?v=3","gravatar_id":"","url":"https://api.github.com/users/hpeberhard","html_url":"https://github.com/hpeberhard","followers_url":"https://api.github.com/users/hpeberhard/followers","following_url":"https://api.github.com/users/hpeberhard/following{/other_user}","gists_url":"https://api.github.com/users/hpeberhard/gists{/gist_id}","starred_url":"https://api.github.com/users/hpeberhard/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hpeberhard/subscriptions","organizations_url":"https://api.github.com/users/hpeberhard/orgs","repos_url":"https://api.github.com/users/hpeberhard/repos","events_url":"https://api.github.com/users/hpeberhard/events{/privacy}","received_events_url":"https://api.github.com/users/hpeberhard/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":9,"created_at":"2015-07-10T09:10:58Z","updated_at":"2015-07-16T06:29:26Z","closed_at":null,"body":"devtools::install_github(\"gschofl/HLAsim\")\r\nDownloading github repo gschofl/HLAsim@master\r\nInstalling HLAsim\r\nSkipping 1 packages not available: purrr\r\n'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ  \\\r\n  --no-save --no-restore CMD INSTALL  \\\r\n  '/private/var/folders/bt/1qz34dm91nzbt9tjqvr7qxz80000gn/T/RtmpvtOb9s/devtoolsf0325cc587/gschofl-HLAsim-349bbc6'  \\\r\n  --library='/Library/Frameworks/R.framework/Versions/3.2/Resources/library'  \\\r\n  --install-tests \r\n\r\n* installing *source* package ‘HLAsim’ ...\r\n** libs\r\nclang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I\"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include\"   -fPIC  -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o\r\nclang++ -std=c++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I\"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include\"   -fPIC  -Wall -mtune=core2 -g -O2 -c sort-hla.cpp -o sort-hla.o\r\nclang++ -std=c++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HLAsim.so RcppExports.o sort-hla.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation\r\ninstalling to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/HLAsim/libs\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nWarning: namespace ‘HLAsim’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dpb1’\r\nWarning: namespace ‘orcl’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dpb1’\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nWarning: namespace ‘HLAsim’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dpb1’\r\nWarning: namespace ‘orcl’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dpb1’\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nWarning: namespace ‘HLAsim’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dqb1’\r\nWarning: namespace ‘orcl’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dqb1’\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nWarning: namespace ‘HLAsim’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dqb1’\r\nWarning: namespace ‘orcl’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘dqb1’\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nWarning: namespace ‘HLAsim’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘drb1’\r\nWarning: namespace ‘orcl’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘drb1’\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nWarning: namespace ‘HLAsim’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘drb1’\r\nWarning: namespace ‘orcl’ is not available and has been replaced\r\nby .GlobalEnv when processing object ‘drb1’\r\n** preparing package for lazy loading\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded\r\nWarning: replacing previous import by ‘dplyr::between’ when loading ‘HLAsim’\r\nWarning: replacing previous import by ‘dplyr::last’ when loading ‘HLAsim’\r\nError in namespaceExport(ns, exports) : \r\n  undefined exports: get_testdata, make_test_instance, make_test_instance2\r\nFehler: Laden fehlgeschlagen\r\nAusführung angehalten\r\nERROR: loading failed\r\n* removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/HLAsim’\r\nFehler: Command failed (1)"},"comment":{"url":"https://api.github.com/repos/gschofl/HLAsim/issues/comments/121845958","html_url":"https://github.com/gschofl/HLAsim/issues/1#issuecomment-121845958","issue_url":"https://api.github.com/repos/gschofl/HLAsim/issues/1","id":121845958,"user":{"login":"hpeberhard","id":13271222,"avatar_url":"https://avatars.githubusercontent.com/u/13271222?v=3","gravatar_id":"","url":"https://api.github.com/users/hpeberhard","html_url":"https://github.com/hpeberhard","followers_url":"https://api.github.com/users/hpeberhard/followers","following_url":"https://api.github.com/users/hpeberhard/following{/other_user}","gists_url":"https://api.github.com/users/hpeberhard/gists{/gist_id}","starred_url":"https://api.github.com/users/hpeberhard/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hpeberhard/subscriptions","organizations_url":"https://api.github.com/users/hpeberhard/orgs","repos_url":"https://api.github.com/users/hpeberhard/repos","events_url":"https://api.github.com/users/hpeberhard/events{/privacy}","received_events_url":"https://api.github.com/users/hpeberhard/received_events","type":"User","site_admin":false},"created_at":"2015-07-16T06:29:26Z","updated_at":"2015-07-16T06:29:26Z","body":"Confirmed. The latest commit runs the code in vignettes/introduction.Rmd for provenance DE and drb1 and dqb1 without any issues. \r\nGreat job!\r\n\r\nP.S.: the single subtypes for G- or P-codes occur when all alleles but one get deleted from the group over time."}}