{"action":"created","issue":{"url":"https://api.github.com/repos/genome/gms/issues/177","labels_url":"https://api.github.com/repos/genome/gms/issues/177/labels{/name}","comments_url":"https://api.github.com/repos/genome/gms/issues/177/comments","events_url":"https://api.github.com/repos/genome/gms/issues/177/events","html_url":"https://github.com/genome/gms/issues/177","id":60517235,"number":177,"title":"ref-align builds fail with error The 'users' parameter did not pass the 'must contain sponsor and requestor' callback","user":{"login":"gatoravi","id":764948,"avatar_url":"https://avatars.githubusercontent.com/u/764948?v=3","gravatar_id":"","url":"https://api.github.com/users/gatoravi","html_url":"https://github.com/gatoravi","followers_url":"https://api.github.com/users/gatoravi/followers","following_url":"https://api.github.com/users/gatoravi/following{/other_user}","gists_url":"https://api.github.com/users/gatoravi/gists{/gist_id}","starred_url":"https://api.github.com/users/gatoravi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gatoravi/subscriptions","organizations_url":"https://api.github.com/users/gatoravi/orgs","repos_url":"https://api.github.com/users/gatoravi/repos","events_url":"https://api.github.com/users/gatoravi/events{/privacy}","received_events_url":"https://api.github.com/users/gatoravi/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/genome/gms/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/genome/gms/labels/testing%20merge","name":"testing merge","color":"fbca04"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":9,"created_at":"2015-03-10T15:25:46Z","updated_at":"2015-03-10T19:54:07Z","closed_at":null,"body":"```   \r\n     1 2015-03-10 14:47:55+0000 ip-172-31-23-19: DEBUG: config key datetime exists\r\n     2 2015-03-10 14:47:55+0000 ip-172-31-23-19: DEBUG: got datetime format %Y-%m-%d %H:%M:%S\r\n     3 2015-03-10 14:47:56+0000 ip-172-31-23-19: #################################################\r\n     4 2015-03-10 14:47:56+0000 ip-172-31-23-19: Date Scheduled:  2015-03-10 14:47:55\r\n     5 2015-03-10 14:47:56+0000 ip-172-31-23-19: Type:  execute\r\n     6 2015-03-10 14:47:56+0000 ip-172-31-23-19: LSF Job Id:  116\r\n     7 2015-03-10 14:47:56+0000 ip-172-31-23-19: Pid:  38325\r\n     8 2015-03-10 14:47:56+0000 ip-172-31-23-19: HOST:  ip-172-31-23-193\r\n     9 2015-03-10 14:47:56+0000 ip-172-31-23-19: USER:  ubuntu\r\n    10 2015-03-10 14:47:56+0000 ip-172-31-23-19: DEBUG: Build directory: /opt/gms/L357V43/fs/L357V43/info/model_data/2891377978/build50c0922a63e649cbb8a196a46887856b\r\n    11 2015-03-10 14:47:56+0000 ip-172-31-23-19: Odd number of elements in anonymous hash at /opt/gms/L357V43/sw/genome/lib/perl/Genome/SoftwareResult/User.pm line 192.\r\n    12 2015-03-10 14:47:57+0000 ip-172-31-23-19: DEBUG: Finding or generating reference build index for aligner bwa version 0.5.9 params -t 4 -q 5:: refbuild Genome::Model::Build::                 ImportedReferenceSequence=HASH(0x7f63240)\r\n    13 2015-03-10 14:47:57+0000 ip-172-31-23-19: ERROR: The 'users' parameter (\"HASH(0x77e4ce8)\") to Genome::SoftwareResult::User::with_registered_users did not pass the 'must contain              sponsor and requestor' callback\r\n    14 2015-03-10 14:47:57+0000 ip-172-31-23-19:  at /opt/gms/L357V43/sw/genome/lib/perl/Genome/SoftwareResult/User.pm line 49\r\n    15 2015-03-10 14:47:57+0000 ip-172-31-23-19:   Genome::SoftwareResult::User::with_registered_users(undef, '_user_data_for_nested_results', 'HASH(0x4659ce0)', 'aligner_version', 0.5.9,          'aligner_name', 'bwa', 'users', 'HASH(0x77e4ce8)', ...) called at /opt/gms/L357V43/sw/genome/lib/perl/Genome/SoftwareResult.pm line 261\r\n    16 2015-03-10 14:47:57+0000 ip-172-31-23-19:   Genome::SoftwareResult::get_or_create('Genome::Model::Build::ReferenceSequence::AlignerIndex', 'aligner_name', 'bwa', 'aligner_version', 0.       5.9, 'aligner_params', '-t 4 -q 5::', 'users', 'HASH(0x77e4ce8)', ...) called at /opt/gms/L357V43/sw/genome/lib/perl/Genome/Model/Build/ReferenceSequence/AlignerIndex.pm line 113\r\n```"},"comment":{"url":"https://api.github.com/repos/genome/gms/issues/comments/78134240","html_url":"https://github.com/genome/gms/issues/177#issuecomment-78134240","issue_url":"https://api.github.com/repos/genome/gms/issues/177","id":78134240,"user":{"login":"malachig","id":856728,"avatar_url":"https://avatars.githubusercontent.com/u/856728?v=3","gravatar_id":"","url":"https://api.github.com/users/malachig","html_url":"https://github.com/malachig","followers_url":"https://api.github.com/users/malachig/followers","following_url":"https://api.github.com/users/malachig/following{/other_user}","gists_url":"https://api.github.com/users/malachig/gists{/gist_id}","starred_url":"https://api.github.com/users/malachig/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/malachig/subscriptions","organizations_url":"https://api.github.com/users/malachig/orgs","repos_url":"https://api.github.com/users/malachig/repos","events_url":"https://api.github.com/users/malachig/events{/privacy}","received_events_url":"https://api.github.com/users/malachig/received_events","type":"User","site_admin":false},"created_at":"2015-03-10T19:54:07Z","updated_at":"2015-03-10T19:54:07Z","body":"@tmooney is there more information somewhere on the details of how users are synced from LDAP?  Is this something that is done in conjunction with systems and lims groups?  Is there a puppet or cron task that keeps on top of this?  Or initiated by someone with an admin role as people join/leave TGI?"}}