{"action":"opened","number":272,"pull_request":{"url":"https://api.github.com/repos/YeoLab/flotilla/pulls/272","id":31173337,"html_url":"https://github.com/YeoLab/flotilla/pull/272","diff_url":"https://github.com/YeoLab/flotilla/pull/272.diff","patch_url":"https://github.com/YeoLab/flotilla/pull/272.patch","issue_url":"https://api.github.com/repos/YeoLab/flotilla/issues/272","number":272,"state":"open","locked":false,"title":"Supplemental data","user":{"login":"olgabot","id":806256,"avatar_url":"https://avatars.githubusercontent.com/u/806256?v=3","gravatar_id":"","url":"https://api.github.com/users/olgabot","html_url":"https://github.com/olgabot","followers_url":"https://api.github.com/users/olgabot/followers","following_url":"https://api.github.com/users/olgabot/following{/other_user}","gists_url":"https://api.github.com/users/olgabot/gists{/gist_id}","starred_url":"https://api.github.com/users/olgabot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/olgabot/subscriptions","organizations_url":"https://api.github.com/users/olgabot/orgs","repos_url":"https://api.github.com/users/olgabot/repos","events_url":"https://api.github.com/users/olgabot/events{/privacy}","received_events_url":"https://api.github.com/users/olgabot/received_events","type":"User","site_admin":false},"body":"Allow the user to save any arbitrary pandas dataframe as \"supplemental\" data on the study, e.g.\r\n\r\n```\r\nstudy.supplemental.tf_corr = tfs.corr()\r\n```\r\n\r\nAny data saved to the `study.supplemental` object will be saved as part of the datapackage and reloaded upon `embark`.\r\n\r\n- [ ] Is it mergable?\r\n- [ ] Did it pass the tests?\r\n- [ ] If it introduces new functionality in scripts/ is it tested?\r\n  Check for code coverage. To run code coverage on only the file you changed,\r\n  for example `flotilla/compute/splicing.py`, use this command: \r\n  `py.test --cov flotilla/compute/splicing.py --cov-report term-missing flotilla/test/compute/test_splicing.py`\r\n  which will show you which lines aren't covered by the tests.\r\n- [ ] Do the new functions have descriptive \r\n  [numpydoc](https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt)\r\n  style docstrings?\r\n- [ ] If it adds a new plot, is it documented in the gallery?\r\n- [ ] Is it well formatted? Look at `make pep8` and `make lint` output\r\n- [ ] Is it documented in the doc/releases/?\r\n- [ ] Was a spellchecker run on the source code and documentation after\r\n  changes were made?","created_at":"2015-03-13T23:52:56Z","updated_at":"2015-03-13T23:52:56Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/YeoLab/flotilla/pulls/272/commits","review_comments_url":"https://api.github.com/repos/YeoLab/flotilla/pulls/272/comments","review_comment_url":"https://api.github.com/repos/YeoLab/flotilla/pulls/comments{/number}","comments_url":"https://api.github.com/repos/YeoLab/flotilla/issues/272/comments","statuses_url":"https://api.github.com/repos/YeoLab/flotilla/statuses/4b86fc1ab411e9835179142d9995fbbe9abb7a9c","head":{"label":"YeoLab:supplemental_data","ref":"supplemental_data","sha":"4b86fc1ab411e9835179142d9995fbbe9abb7a9c","user":{"login":"YeoLab","id":2112324,"avatar_url":"https://avatars.githubusercontent.com/u/2112324?v=3","gravatar_id":"","url":"https://api.github.com/users/YeoLab","html_url":"https://github.com/YeoLab","followers_url":"https://api.github.com/users/YeoLab/followers","following_url":"https://api.github.com/users/YeoLab/following{/other_user}","gists_url":"https://api.github.com/users/YeoLab/gists{/gist_id}","starred_url":"https://api.github.com/users/YeoLab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/YeoLab/subscriptions","organizations_url":"https://api.github.com/users/YeoLab/orgs","repos_url":"https://api.github.com/users/YeoLab/repos","events_url":"https://api.github.com/users/YeoLab/events{/privacy}","received_events_url":"https://api.github.com/users/YeoLab/received_events","type":"Organization","site_admin":false},"repo":{"id":19319564,"name":"flotilla","full_name":"YeoLab/flotilla","owner":{"login":"YeoLab","id":2112324,"avatar_url":"https://avatars.githubusercontent.com/u/2112324?v=3","gravatar_id":"","url":"https://api.github.com/users/YeoLab","html_url":"https://github.com/YeoLab","followers_url":"https://api.github.com/users/YeoLab/followers","following_url":"https://api.github.com/users/YeoLab/following{/other_user}","gists_url":"https://api.github.com/users/YeoLab/gists{/gist_id}","starred_url":"https://api.github.com/users/YeoLab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/YeoLab/subscriptions","organizations_url":"https://api.github.com/users/YeoLab/orgs","repos_url":"https://api.github.com/users/YeoLab/repos","events_url":"https://api.github.com/users/YeoLab/events{/privacy}","received_events_url":"https://api.github.com/users/YeoLab/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/YeoLab/flotilla","description":"Reproducible machine learning analysis of gene expression and alternative splicing data","fork":false,"url":"https://api.github.com/repos/YeoLab/flotilla","forks_url":"https://api.github.com/repos/YeoLab/flotilla/forks","keys_url":"https://api.github.com/repos/YeoLab/flotilla/keys{/key_id}","collaborators_url":"https://api.github.com/repos/YeoLab/flotilla/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/YeoLab/flotilla/teams","hooks_url":"https://api.github.com/repos/YeoLab/flotilla/hooks","issue_events_url":"https://api.github.com/repos/YeoLab/flotilla/issues/events{/number}","events_url":"https://api.github.com/repos/YeoLab/flotilla/events","assignees_url":"https://api.github.com/repos/YeoLab/flotilla/assignees{/user}","branches_url":"https://api.github.com/repos/YeoLab/flotilla/branches{/branch}","tags_url":"https://api.github.com/repos/YeoLab/flotilla/tags","blobs_url":"https://api.github.com/repos/YeoLab/flotilla/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/YeoLab/flotilla/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/YeoLab/flotilla/git/refs{/sha}","trees_url":"https://api.github.com/repos/YeoLab/flotilla/git/trees{/sha}","statuses_url":"https://api.github.com/repos/YeoLab/flotilla/statuses/{sha}","languages_url":"https://api.github.com/repos/YeoLab/flotilla/languages","stargazers_url":"https://api.github.com/repos/YeoLab/flotilla/stargazers","contributors_url":"https://api.github.com/repos/YeoLab/flotilla/contributors","subscribers_url":"https://api.github.com/repos/YeoLab/flotilla/subscribers","subscription_url":"https://api.github.com/repos/YeoLab/flotilla/subscription","commits_url":"https://api.github.com/repos/YeoLab/flotilla/commits{/sha}","git_commits_url":"https://api.github.com/repos/YeoLab/flotilla/git/commits{/sha}","comments_url":"https://api.github.com/repos/YeoLab/flotilla/comments{/number}","issue_comment_url":"https://api.github.com/repos/YeoLab/flotilla/issues/comments{/number}","contents_url":"https://api.github.com/repos/YeoLab/flotilla/contents/{+path}","compare_url":"https://api.github.com/repos/YeoLab/flotilla/compare/{base}...{head}","merges_url":"https://api.github.com/repos/YeoLab/flotilla/merges","archive_url":"https://api.github.com/repos/YeoLab/flotilla/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/YeoLab/flotilla/downloads","issues_url":"https://api.github.com/repos/YeoLab/flotilla/issues{/number}","pulls_url":"https://api.github.com/repos/YeoLab/flotilla/pulls{/number}","milestones_url":"https://api.github.com/repos/YeoLab/flotilla/milestones{/number}","notifications_url":"https://api.github.com/repos/YeoLab/flotilla/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/YeoLab/flotilla/labels{/name}","releases_url":"https://api.github.com/repos/YeoLab/flotilla/releases{/id}","created_at":"2014-04-30T16:14:31Z","updated_at":"2015-03-13T23:47:33Z","pushed_at":"2015-03-13T23:51:30Z","git_url":"git://github.com/YeoLab/flotilla.git","ssh_url":"git@github.com:YeoLab/flotilla.git","clone_url":"https://github.com/YeoLab/flotilla.git","svn_url":"https://github.com/YeoLab/flotilla","homepage":"http://yeolab.github.io/flotilla/docs","size":117917,"stargazers_count":32,"watchers_count":32,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":true,"forks_count":7,"mirror_url":null,"open_issues_count":65,"forks":7,"open_issues":65,"watchers":32,"default_branch":"master"}},"base":{"label":"YeoLab:master","ref":"master","sha":"5dd63d3d3922e2424e80f452245f652e9cb24922","user":{"login":"YeoLab","id":2112324,"avatar_url":"https://avatars.githubusercontent.com/u/2112324?v=3","gravatar_id":"","url":"https://api.github.com/users/YeoLab","html_url":"https://github.com/YeoLab","followers_url":"https://api.github.com/users/YeoLab/followers","following_url":"https://api.github.com/users/YeoLab/following{/other_user}","gists_url":"https://api.github.com/users/YeoLab/gists{/gist_id}","starred_url":"https://api.github.com/users/YeoLab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/YeoLab/subscriptions","organizations_url":"https://api.github.com/users/YeoLab/orgs","repos_url":"https://api.github.com/users/YeoLab/repos","events_url":"https://api.github.com/users/YeoLab/events{/privacy}","received_events_url":"https://api.github.com/users/YeoLab/received_events","type":"Organization","site_admin":false},"repo":{"id":19319564,"name":"flotilla","full_name":"YeoLab/flotilla","owner":{"login":"YeoLab","id":2112324,"avatar_url":"https://avatars.githubusercontent.com/u/2112324?v=3","gravatar_id":"","url":"https://api.github.com/users/YeoLab","html_url":"https://github.com/YeoLab","followers_url":"https://api.github.com/users/YeoLab/followers","following_url":"https://api.github.com/users/YeoLab/following{/other_user}","gists_url":"https://api.github.com/users/YeoLab/gists{/gist_id}","starred_url":"https://api.github.com/users/YeoLab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/YeoLab/subscriptions","organizations_url":"https://api.github.com/users/YeoLab/orgs","repos_url":"https://api.github.com/users/YeoLab/repos","events_url":"https://api.github.com/users/YeoLab/events{/privacy}","received_events_url":"https://api.github.com/users/YeoLab/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/YeoLab/flotilla","description":"Reproducible machine learning analysis of gene expression and alternative splicing data","fork":false,"url":"https://api.github.com/repos/YeoLab/flotilla","forks_url":"https://api.github.com/repos/YeoLab/flotilla/forks","keys_url":"https://api.github.com/repos/YeoLab/flotilla/keys{/key_id}","collaborators_url":"https://api.github.com/repos/YeoLab/flotilla/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/YeoLab/flotilla/teams","hooks_url":"https://api.github.com/repos/YeoLab/flotilla/hooks","issue_events_url":"https://api.github.com/repos/YeoLab/flotilla/issues/events{/number}","events_url":"https://api.github.com/repos/YeoLab/flotilla/events","assignees_url":"https://api.github.com/repos/YeoLab/flotilla/assignees{/user}","branches_url":"https://api.github.com/repos/YeoLab/flotilla/branches{/branch}","tags_url":"https://api.github.com/repos/YeoLab/flotilla/tags","blobs_url":"https://api.github.com/repos/YeoLab/flotilla/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/YeoLab/flotilla/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/YeoLab/flotilla/git/refs{/sha}","trees_url":"https://api.github.com/repos/YeoLab/flotilla/git/trees{/sha}","statuses_url":"https://api.github.com/repos/YeoLab/flotilla/statuses/{sha}","languages_url":"https://api.github.com/repos/YeoLab/flotilla/languages","stargazers_url":"https://api.github.com/repos/YeoLab/flotilla/stargazers","contributors_url":"https://api.github.com/repos/YeoLab/flotilla/contributors","subscribers_url":"https://api.github.com/repos/YeoLab/flotilla/subscribers","subscription_url":"https://api.github.com/repos/YeoLab/flotilla/subscription","commits_url":"https://api.github.com/repos/YeoLab/flotilla/commits{/sha}","git_commits_url":"https://api.github.com/repos/YeoLab/flotilla/git/commits{/sha}","comments_url":"https://api.github.com/repos/YeoLab/flotilla/comments{/number}","issue_comment_url":"https://api.github.com/repos/YeoLab/flotilla/issues/comments{/number}","contents_url":"https://api.github.com/repos/YeoLab/flotilla/contents/{+path}","compare_url":"https://api.github.com/repos/YeoLab/flotilla/compare/{base}...{head}","merges_url":"https://api.github.com/repos/YeoLab/flotilla/merges","archive_url":"https://api.github.com/repos/YeoLab/flotilla/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/YeoLab/flotilla/downloads","issues_url":"https://api.github.com/repos/YeoLab/flotilla/issues{/number}","pulls_url":"https://api.github.com/repos/YeoLab/flotilla/pulls{/number}","milestones_url":"https://api.github.com/repos/YeoLab/flotilla/milestones{/number}","notifications_url":"https://api.github.com/repos/YeoLab/flotilla/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/YeoLab/flotilla/labels{/name}","releases_url":"https://api.github.com/repos/YeoLab/flotilla/releases{/id}","created_at":"2014-04-30T16:14:31Z","updated_at":"2015-03-13T23:47:33Z","pushed_at":"2015-03-13T23:51:30Z","git_url":"git://github.com/YeoLab/flotilla.git","ssh_url":"git@github.com:YeoLab/flotilla.git","clone_url":"https://github.com/YeoLab/flotilla.git","svn_url":"https://github.com/YeoLab/flotilla","homepage":"http://yeolab.github.io/flotilla/docs","size":117917,"stargazers_count":32,"watchers_count":32,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":true,"forks_count":7,"mirror_url":null,"open_issues_count":65,"forks":7,"open_issues":65,"watchers":32,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/YeoLab/flotilla/pulls/272"},"html":{"href":"https://github.com/YeoLab/flotilla/pull/272"},"issue":{"href":"https://api.github.com/repos/YeoLab/flotilla/issues/272"},"comments":{"href":"https://api.github.com/repos/YeoLab/flotilla/issues/272/comments"},"review_comments":{"href":"https://api.github.com/repos/YeoLab/flotilla/pulls/272/comments"},"review_comment":{"href":"https://api.github.com/repos/YeoLab/flotilla/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/YeoLab/flotilla/pulls/272/commits"},"statuses":{"href":"https://api.github.com/repos/YeoLab/flotilla/statuses/4b86fc1ab411e9835179142d9995fbbe9abb7a9c"}},"merged":false,"mergeable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"commits":2,"additions":98,"deletions":15,"changed_files":4}}