{"action":"created","issue":{"url":"https://api.github.com/repos/radical-cybertools/radical.repex/issues/71","labels_url":"https://api.github.com/repos/radical-cybertools/radical.repex/issues/71/labels{/name}","comments_url":"https://api.github.com/repos/radical-cybertools/radical.repex/issues/71/comments","events_url":"https://api.github.com/repos/radical-cybertools/radical.repex/issues/71/events","html_url":"https://github.com/radical-cybertools/radical.repex/issues/71","id":115573984,"number":71,"title":"TSU stuck in the first T exchange step","user":{"login":"haoyuanchen","id":7672745,"avatar_url":"https://avatars.githubusercontent.com/u/7672745?v=3","gravatar_id":"","url":"https://api.github.com/users/haoyuanchen","html_url":"https://github.com/haoyuanchen","followers_url":"https://api.github.com/users/haoyuanchen/followers","following_url":"https://api.github.com/users/haoyuanchen/following{/other_user}","gists_url":"https://api.github.com/users/haoyuanchen/gists{/gist_id}","starred_url":"https://api.github.com/users/haoyuanchen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/haoyuanchen/subscriptions","organizations_url":"https://api.github.com/users/haoyuanchen/orgs","repos_url":"https://api.github.com/users/haoyuanchen/repos","events_url":"https://api.github.com/users/haoyuanchen/events{/privacy}","received_events_url":"https://api.github.com/users/haoyuanchen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-11-06T19:45:24Z","updated_at":"2015-11-11T17:17:00Z","closed_at":null,"body":"I tried a TSU-run with 32 replica on Stampede but it got stuck in the first T-exchange step. The STDOUT file in the T-exchange unit folder keeps outputting\r\n> Waiting for replica: 0\r\n\r\nbut I've checked that all replicas successfully finished the first MD step. \r\n\r\nAlso, all the STDERR files says\r\n> Resetting modules to system default\r\nLmod has detected the following error: These module(s) exist but cannot be\r\nloaded as requested: \"amber\"\r\n\r\n>   Try: \"module spider amber\" to see how to load the module(s).\r\n\r\nSince the MD step finished normally with the same STDERR file, this might not be causing the error though.\r\n\r\nVersion: 146b57b659a737990716e3c40aaca6940a44f371 (devel branch)\r\n\r\nThanks!\r\n"},"comment":{"url":"https://api.github.com/repos/radical-cybertools/radical.repex/issues/comments/155850676","html_url":"https://github.com/radical-cybertools/radical.repex/issues/71#issuecomment-155850676","issue_url":"https://api.github.com/repos/radical-cybertools/radical.repex/issues/71","id":155850676,"user":{"login":"haoyuanchen","id":7672745,"avatar_url":"https://avatars.githubusercontent.com/u/7672745?v=3","gravatar_id":"","url":"https://api.github.com/users/haoyuanchen","html_url":"https://github.com/haoyuanchen","followers_url":"https://api.github.com/users/haoyuanchen/followers","following_url":"https://api.github.com/users/haoyuanchen/following{/other_user}","gists_url":"https://api.github.com/users/haoyuanchen/gists{/gist_id}","starred_url":"https://api.github.com/users/haoyuanchen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/haoyuanchen/subscriptions","organizations_url":"https://api.github.com/users/haoyuanchen/orgs","repos_url":"https://api.github.com/users/haoyuanchen/repos","events_url":"https://api.github.com/users/haoyuanchen/events{/privacy}","received_events_url":"https://api.github.com/users/haoyuanchen/received_events","type":"User","site_admin":false},"created_at":"2015-11-11T17:17:00Z","updated_at":"2015-11-11T17:17:00Z","body":"It's the dna_gold example. I believe that all necessary files are in tuu_remd_inputs directory. The running command is:\r\n\r\n> nohup repex-amber --input='tsu_remd_dna_gold.json' --rconfig='stampede.json' 2 > foo.log &\r\n\r\nFor other TSU examples there's no such problem."}}