{"action":"created","issue":{"url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/1","labels_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/1/comments","events_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/1/events","html_url":"https://github.com/CGATOxford/UMI-tools/issues/1","id":60362889,"number":1,"title":"Add paired end functionality","user":{"login":"TomSmithCGAT","id":6096414,"avatar_url":"https://avatars.githubusercontent.com/u/6096414?v=3","gravatar_id":"","url":"https://api.github.com/users/TomSmithCGAT","html_url":"https://github.com/TomSmithCGAT","followers_url":"https://api.github.com/users/TomSmithCGAT/followers","following_url":"https://api.github.com/users/TomSmithCGAT/following{/other_user}","gists_url":"https://api.github.com/users/TomSmithCGAT/gists{/gist_id}","starred_url":"https://api.github.com/users/TomSmithCGAT/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomSmithCGAT/subscriptions","organizations_url":"https://api.github.com/users/TomSmithCGAT/orgs","repos_url":"https://api.github.com/users/TomSmithCGAT/repos","events_url":"https://api.github.com/users/TomSmithCGAT/events{/privacy}","received_events_url":"https://api.github.com/users/TomSmithCGAT/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/CGATOxford/UMI-tools/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-03-09T15:44:10Z","updated_at":"2015-03-12T12:07:14Z","closed_at":"2015-03-12T12:07:14Z","body":"Currently UMI-tools dedup_umi.py only outputs the first pair for paired end BAMs although it uses the template to dedup paired end input. \r\n\r\nProposed solution: Use pysam.AlignmentFile.mate() to return the mate pair."},"comment":{"url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/comments/78467937","html_url":"https://github.com/CGATOxford/UMI-tools/issues/1#issuecomment-78467937","issue_url":"https://api.github.com/repos/CGATOxford/UMI-tools/issues/1","id":78467937,"user":{"login":"TomSmithCGAT","id":6096414,"avatar_url":"https://avatars.githubusercontent.com/u/6096414?v=3","gravatar_id":"","url":"https://api.github.com/users/TomSmithCGAT","html_url":"https://github.com/TomSmithCGAT","followers_url":"https://api.github.com/users/TomSmithCGAT/followers","following_url":"https://api.github.com/users/TomSmithCGAT/following{/other_user}","gists_url":"https://api.github.com/users/TomSmithCGAT/gists{/gist_id}","starred_url":"https://api.github.com/users/TomSmithCGAT/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TomSmithCGAT/subscriptions","organizations_url":"https://api.github.com/users/TomSmithCGAT/orgs","repos_url":"https://api.github.com/users/TomSmithCGAT/repos","events_url":"https://api.github.com/users/TomSmithCGAT/events{/privacy}","received_events_url":"https://api.github.com/users/TomSmithCGAT/received_events","type":"User","site_admin":false},"created_at":"2015-03-12T12:07:14Z","updated_at":"2015-03-12T12:07:14Z","body":"Done."}}