{"action":"created","issue":{"url":"https://api.github.com/repos/Adamtaranto/frisk/issues/17","labels_url":"https://api.github.com/repos/Adamtaranto/frisk/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/Adamtaranto/frisk/issues/17/comments","events_url":"https://api.github.com/repos/Adamtaranto/frisk/issues/17/events","html_url":"https://github.com/Adamtaranto/frisk/pull/17","id":114003318,"number":17,"title":"Cythonise IVOM & K-mer hashing","user":{"login":"kdmurray91","id":1560490,"avatar_url":"https://avatars.githubusercontent.com/u/1560490?v=3","gravatar_id":"","url":"https://api.github.com/users/kdmurray91","html_url":"https://github.com/kdmurray91","followers_url":"https://api.github.com/users/kdmurray91/followers","following_url":"https://api.github.com/users/kdmurray91/following{/other_user}","gists_url":"https://api.github.com/users/kdmurray91/gists{/gist_id}","starred_url":"https://api.github.com/users/kdmurray91/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kdmurray91/subscriptions","organizations_url":"https://api.github.com/users/kdmurray91/orgs","repos_url":"https://api.github.com/users/kdmurray91/repos","events_url":"https://api.github.com/users/kdmurray91/events{/privacy}","received_events_url":"https://api.github.com/users/kdmurray91/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-10-29T08:41:24Z","updated_at":"2015-10-29T09:41:02Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/Adamtaranto/frisk/pulls/17","html_url":"https://github.com/Adamtaranto/frisk/pull/17","diff_url":"https://github.com/Adamtaranto/frisk/pull/17.diff","patch_url":"https://github.com/Adamtaranto/frisk/pull/17.patch"},"body":"This is work in progress, don't merge yet.\r\n\r\nI've rewritten the hashing to use kmer count vectors, and re-done the IVOM function  all in cython. Does about 2-5 3kb windows every second, including hashing. How does that compare time-wise?"},"comment":{"url":"https://api.github.com/repos/Adamtaranto/frisk/issues/comments/152128514","html_url":"https://github.com/Adamtaranto/frisk/pull/17#issuecomment-152128514","issue_url":"https://api.github.com/repos/Adamtaranto/frisk/issues/17","id":152128514,"user":{"login":"kdmurray91","id":1560490,"avatar_url":"https://avatars.githubusercontent.com/u/1560490?v=3","gravatar_id":"","url":"https://api.github.com/users/kdmurray91","html_url":"https://github.com/kdmurray91","followers_url":"https://api.github.com/users/kdmurray91/followers","following_url":"https://api.github.com/users/kdmurray91/following{/other_user}","gists_url":"https://api.github.com/users/kdmurray91/gists{/gist_id}","starred_url":"https://api.github.com/users/kdmurray91/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kdmurray91/subscriptions","organizations_url":"https://api.github.com/users/kdmurray91/orgs","repos_url":"https://api.github.com/users/kdmurray91/repos","events_url":"https://api.github.com/users/kdmurray91/events{/privacy}","received_events_url":"https://api.github.com/users/kdmurray91/received_events","type":"User","site_admin":false},"created_at":"2015-10-29T09:41:02Z","updated_at":"2015-10-29T09:41:02Z","body":"If you want to test it out, I'm using https://gist.github.com/19e3df51c6e4f3af642a\r\n\r\nAlso, you need to do `python setup.py build_ext --inplace` before running the above."}}