{"action":"created","issue":{"url":"https://api.github.com/repos/SwissTPH/openmalaria/issues/92","labels_url":"https://api.github.com/repos/SwissTPH/openmalaria/issues/92/labels{/name}","comments_url":"https://api.github.com/repos/SwissTPH/openmalaria/issues/92/comments","events_url":"https://api.github.com/repos/SwissTPH/openmalaria/issues/92/events","html_url":"https://github.com/SwissTPH/openmalaria/issues/92","id":86542638,"number":92,"title":"Document schema-changes of version 33 in the 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documentation","description":"Update documentation to reflect the current state.\r\n\r\nRestructure wiki, so new users find the correct information on the first try.","creator":{"login":"tph-thuering","id":9700759,"avatar_url":"https://avatars.githubusercontent.com/u/9700759?v=3","gravatar_id":"","url":"https://api.github.com/users/tph-thuering","html_url":"https://github.com/tph-thuering","followers_url":"https://api.github.com/users/tph-thuering/followers","following_url":"https://api.github.com/users/tph-thuering/following{/other_user}","gists_url":"https://api.github.com/users/tph-thuering/gists{/gist_id}","starred_url":"https://api.github.com/users/tph-thuering/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tph-thuering/subscriptions","organizations_url":"https://api.github.com/users/tph-thuering/orgs","repos_url":"https://api.github.com/users/tph-thuering/repos","events_url":"https://api.github.com/users/tph-thuering/events{/privacy}","received_events_url":"https://api.github.com/users/tph-thuering/received_events","type":"User","site_admin":false},"open_issues":5,"closed_issues":7,"state":"open","created_at":"2015-05-08T14:40:27Z","updated_at":"2015-11-05T16:08:49Z","due_on":null,"closed_at":null},"comments":3,"created_at":"2015-06-09T10:22:20Z","updated_at":"2015-11-07T11:41:20Z","closed_at":null,"body":"Required:\r\n\r\n- [x] MDA1D -> decisionTree, MDA -> treatSimple / treatPKPD\r\n- [x] diagnostic changes for Screen intervention and CM decisions\r\n\r\nOptional:\r\n\r\n- [x] time units\r\n- [x] dates\r\n- [x] detectionLimit → diagnostic\r\n- [ ] neonatal diagnostic\r\n- [x] parasiteGenetics\r\n- [x] monitoring\r\n\r\nOutput:\r\n- [ ] vector species name replaced with number\r\n- [x] innoculationsPerAgeGroup changed (now + cohort set)\r\n\r\n### Imported from #104\r\n\r\nDocumentation (mostly for next schema version):\r\n\r\n- [x] MDA/MSAT intervention change\r\n- [ ] CM5DayDT\r\n- [ ] CFR option\r\n- [x] diagnostics\r\n- [ ]     Neonatal mortality diagnostic\r\n- [x] times, dates\r\n\r\nGenetics:\r\n- [x]     XML\r\n- [x]     mapping\r\n- [x]     only trackable with vector model in dynamic mode\r\n- [x]     initial frequencies used until the intervention period\r\n- [x]     imported infections use initial frequencies\r\n\r\nMolineaux model changes:\r\n- [x]     blood volume is now determined by age (i.e. not always adult volume); assumptions:\r\n    \r\n    *   initial density (PRBC/μl) is constant across hosts\r\n    *   extinction threshold in number of parasites (PRBC) is constant across hosts\r\n- [x]     bug fix: sampling of initial per-infection parameters when not in pairwise mode\r\n\r\nTools:\r\n\r\n- [ ] plotResults.py"},"comment":{"url":"https://api.github.com/repos/SwissTPH/openmalaria/issues/comments/154693244","html_url":"https://github.com/SwissTPH/openmalaria/issues/92#issuecomment-154693244","issue_url":"https://api.github.com/repos/SwissTPH/openmalaria/issues/92","id":154693244,"user":{"login":"dhardy","id":134893,"avatar_url":"https://avatars.githubusercontent.com/u/134893?v=3","gravatar_id":"","url":"https://api.github.com/users/dhardy","html_url":"https://github.com/dhardy","followers_url":"https://api.github.com/users/dhardy/followers","following_url":"https://api.github.com/users/dhardy/following{/other_user}","gists_url":"https://api.github.com/users/dhardy/gists{/gist_id}","starred_url":"https://api.github.com/users/dhardy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dhardy/subscriptions","organizations_url":"https://api.github.com/users/dhardy/orgs","repos_url":"https://api.github.com/users/dhardy/repos","events_url":"https://api.github.com/users/dhardy/events{/privacy}","received_events_url":"https://api.github.com/users/dhardy/received_events","type":"User","site_admin":false},"created_at":"2015-11-07T11:41:20Z","updated_at":"2015-11-07T11:41:20Z","body":"The plotResult documentation is actually issue #64."}}