{"action":"created","issue":{"url":"https://api.github.com/repos/pombase/pombase-chado/issues/481","labels_url":"https://api.github.com/repos/pombase/pombase-chado/issues/481/labels{/name}","comments_url":"https://api.github.com/repos/pombase/pombase-chado/issues/481/comments","events_url":"https://api.github.com/repos/pombase/pombase-chado/issues/481/events","html_url":"https://github.com/pombase/pombase-chado/issues/481","id":102721123,"number":481,"title":"First modelling of exons in Chado","user":{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars.githubusercontent.com/u/90474?v=3","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/pombase/pombase-chado/labels/high%20priority","name":"high priority","color":"eb6420"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/pombase/pombase-chado/milestones/2","html_url":"https://github.com/pombase/pombase-chado/milestones/V55%20release","labels_url":"https://api.github.com/repos/pombase/pombase-chado/milestones/2/labels","id":1242877,"number":2,"title":"V55 release","description":"","creator":{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars.githubusercontent.com/u/90474?v=3","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"open_issues":5,"closed_issues":3,"state":"open","created_at":"2015-08-05T21:55:13Z","updated_at":"2015-08-24T07:57:31Z","due_on":"2015-08-31T12:00:00Z","closed_at":null},"comments":1,"created_at":"2015-08-24T06:48:42Z","updated_at":"2015-08-24T08:15:55Z","closed_at":null,"body":"According to this:\r\n  http://gmod.org/wiki/Chado_Best_Practices#Trans-spliced_Gene\r\n\r\nwe need to store a rank in the feature_relationship table that determines the exon order.\r\n\r\nWe also need to fix the exon uniquenames.  On the reverse strand we currently have exon 1 last.  eg.\r\n\r\nfmin, fmax, uniquename:\r\n 1807717 | 1807781 | SPAC1002.06c.1:exon:3\r\n 1807482 | 1807642 | SPAC1002.06c.1:exon:2\r\n 1807269 | 1807402 | SPAC1002.06c.1:exon:1\r\n\r\nNeeded for #172 "},"comment":{"url":"https://api.github.com/repos/pombase/pombase-chado/issues/comments/134087261","html_url":"https://github.com/pombase/pombase-chado/issues/481#issuecomment-134087261","issue_url":"https://api.github.com/repos/pombase/pombase-chado/issues/481","id":134087261,"user":{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars.githubusercontent.com/u/90474?v=3","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"created_at":"2015-08-24T08:15:55Z","updated_at":"2015-08-24T08:15:55Z","body":"Yep, but it also talks about how all exons should be modeled, including in the cis-spliced case."}}