{"action":"created","issue":{"url":"https://api.github.com/repos/baoe/AlignGraph/issues/6","labels_url":"https://api.github.com/repos/baoe/AlignGraph/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/baoe/AlignGraph/issues/6/comments","events_url":"https://api.github.com/repos/baoe/AlignGraph/issues/6/events","html_url":"https://github.com/baoe/AlignGraph/issues/6","id":58766757,"number":6,"title":"ps: illegal option -- f","user":{"login":"kliere","id":11179544,"avatar_url":"https://avatars.githubusercontent.com/u/11179544?v=3","gravatar_id":"","url":"https://api.github.com/users/kliere","html_url":"https://github.com/kliere","followers_url":"https://api.github.com/users/kliere/followers","following_url":"https://api.github.com/users/kliere/following{/other_user}","gists_url":"https://api.github.com/users/kliere/gists{/gist_id}","starred_url":"https://api.github.com/users/kliere/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kliere/subscriptions","organizations_url":"https://api.github.com/users/kliere/orgs","repos_url":"https://api.github.com/users/kliere/repos","events_url":"https://api.github.com/users/kliere/events{/privacy}","received_events_url":"https://api.github.com/users/kliere/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-02-24T16:51:36Z","updated_at":"2015-03-14T01:45:19Z","closed_at":null,"body":"Hi,\r\n\r\nI get this messages while running AlignGraph:\r\n\r\n(0) Alignment finished\r\n\r\nCHROMOSOME 0: \r\n(1) chromosome loaded\r\n(2) contig alignment loaded\r\n(3) read alignment loaded\r\n(4) contigs extended\r\n(5) contigs scaffolded\r\nps: illegal option -- f\r\nusage: ps [-AaCcEefhjlMmrSTvwXx] [-O fmt | -o fmt] [-G gid[,gid...]]\r\n          [-u]\r\n          [-p pid[,pid...]] [-t tty[,tty...]] [-U user[,user...]]\r\n       ps [-L]\r\n\r\nFINISHED for 3192 seconds (2064 seconds for alignment) :-)\r\n\r\nWhat does this ps error mean and how to get around it?\r\n\r\nBest wishes,\r\n\r\nKarsten"},"comment":{"url":"https://api.github.com/repos/baoe/AlignGraph/issues/comments/79671288","html_url":"https://github.com/baoe/AlignGraph/issues/6#issuecomment-79671288","issue_url":"https://api.github.com/repos/baoe/AlignGraph/issues/6","id":79671288,"user":{"login":"baoe","id":5350897,"avatar_url":"https://avatars.githubusercontent.com/u/5350897?v=3","gravatar_id":"","url":"https://api.github.com/users/baoe","html_url":"https://github.com/baoe","followers_url":"https://api.github.com/users/baoe/followers","following_url":"https://api.github.com/users/baoe/following{/other_user}","gists_url":"https://api.github.com/users/baoe/gists{/gist_id}","starred_url":"https://api.github.com/users/baoe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/baoe/subscriptions","organizations_url":"https://api.github.com/users/baoe/orgs","repos_url":"https://api.github.com/users/baoe/repos","events_url":"https://api.github.com/users/baoe/events{/privacy}","received_events_url":"https://api.github.com/users/baoe/received_events","type":"User","site_admin":false},"created_at":"2015-03-14T01:45:19Z","updated_at":"2015-03-14T01:45:19Z","body":"Hi, Karsten,\r\n\r\nAlignGraph does not have this warning message, and it looks like you inputted a Linux command line with \"ps --f\" right after AlignGraph's command.\r\n\r\nMaybe you can double check the command lines you inputted with/without rerunning AlignGraph (since it looks the AlignGraph run does not take much time)?\r\n\r\nBest,\r\nBao"}}