{"action":"closed","issue":{"url":"https://api.github.com/repos/bcgsc/biobloom/issues/8","labels_url":"https://api.github.com/repos/bcgsc/biobloom/issues/8/labels{/name}","comments_url":"https://api.github.com/repos/bcgsc/biobloom/issues/8/comments","events_url":"https://api.github.com/repos/bcgsc/biobloom/issues/8/events","html_url":"https://github.com/bcgsc/biobloom/issues/8","id":119590294,"number":8,"title":"samtools faidx problem","user":{"login":"vardaofthevalier","id":6384889,"avatar_url":"https://avatars.githubusercontent.com/u/6384889?v=3","gravatar_id":"","url":"https://api.github.com/users/vardaofthevalier","html_url":"https://github.com/vardaofthevalier","followers_url":"https://api.github.com/users/vardaofthevalier/followers","following_url":"https://api.github.com/users/vardaofthevalier/following{/other_user}","gists_url":"https://api.github.com/users/vardaofthevalier/gists{/gist_id}","starred_url":"https://api.github.com/users/vardaofthevalier/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vardaofthevalier/subscriptions","organizations_url":"https://api.github.com/users/vardaofthevalier/orgs","repos_url":"https://api.github.com/users/vardaofthevalier/repos","events_url":"https://api.github.com/users/vardaofthevalier/events{/privacy}","received_events_url":"https://api.github.com/users/vardaofthevalier/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-11-30T21:59:38Z","updated_at":"2015-12-07T20:16:13Z","closed_at":"2015-12-07T20:16:13Z","body":"I'm attempting to run biobloommaker on an indexed fasta file that I created with \"samtools faidx ...\"  using a variation of the following command:\r\n\r\n```\r\nbiobloommaker -p prefix indexed_fasta.fa.fai\r\n```\r\nBut I'm getting the following message:\r\n\r\n```\r\nFasta files must be indexed. Use samtools faidx.\r\n```\r\n\r\nI'm a software engineer by profession working on developing bioinformatics workflow tools for one of NCI's Cancer Genomics Cloud pilot projects, so due to having only a superficial understanding of bioinformatics tools in general, I have a feeling there may be something I've missed somewhere that's causing me to run into this issue.  Any suggestions or advice about what I might be doing wrong would be much appreciated.  I'd be happy to provide more information upon request.    "}}