{"action":"created","issue":{"url":"https://api.github.com/repos/arq5x/bedtools2/issues/236","labels_url":"https://api.github.com/repos/arq5x/bedtools2/issues/236/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/bedtools2/issues/236/comments","events_url":"https://api.github.com/repos/arq5x/bedtools2/issues/236/events","html_url":"https://github.com/arq5x/bedtools2/issues/236","id":76042495,"number":236,"title":"Support for bedpe","user":{"login":"oursu","id":5633306,"avatar_url":"https://avatars.githubusercontent.com/u/5633306?v=3","gravatar_id":"","url":"https://api.github.com/users/oursu","html_url":"https://github.com/oursu","followers_url":"https://api.github.com/users/oursu/followers","following_url":"https://api.github.com/users/oursu/following{/other_user}","gists_url":"https://api.github.com/users/oursu/gists{/gist_id}","starred_url":"https://api.github.com/users/oursu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/oursu/subscriptions","organizations_url":"https://api.github.com/users/oursu/orgs","repos_url":"https://api.github.com/users/oursu/repos","events_url":"https://api.github.com/users/oursu/events{/privacy}","received_events_url":"https://api.github.com/users/oursu/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-05-13T16:21:15Z","updated_at":"2015-06-16T21:53:53Z","closed_at":"2015-05-25T23:17:58Z","body":"Hi,\r\n\r\nWould it be possible to add additional methods for bedpe files? These would be very helpful for scientists working with DNA contact maps that are based on DNA-DNA links expressed in bedpe format.\r\n\r\nSpecifically, I was interested in methods for:\r\n- overlapping/windowing a bed file with a bedpe file (that is, overlap the bed file with each anchor in the bedpe file)\r\n- overlapping 2 bedpe files (basically, a regular intersect but performed for both anchors in the bedpe file at the same time)\r\n\r\nI have written code to do this as a bash script. Would it help for me to share it?\r\n\r\nThank you,\r\nOana"},"comment":{"url":"https://api.github.com/repos/arq5x/bedtools2/issues/comments/112579239","html_url":"https://github.com/arq5x/bedtools2/issues/236#issuecomment-112579239","issue_url":"https://api.github.com/repos/arq5x/bedtools2/issues/236","id":112579239,"user":{"login":"arq5x","id":72291,"avatar_url":"https://avatars.githubusercontent.com/u/72291?v=3","gravatar_id":"","url":"https://api.github.com/users/arq5x","html_url":"https://github.com/arq5x","followers_url":"https://api.github.com/users/arq5x/followers","following_url":"https://api.github.com/users/arq5x/following{/other_user}","gists_url":"https://api.github.com/users/arq5x/gists{/gist_id}","starred_url":"https://api.github.com/users/arq5x/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arq5x/subscriptions","organizations_url":"https://api.github.com/users/arq5x/orgs","repos_url":"https://api.github.com/users/arq5x/repos","events_url":"https://api.github.com/users/arq5x/events{/privacy}","received_events_url":"https://api.github.com/users/arq5x/received_events","type":"User","site_admin":false},"created_at":"2015-06-16T21:53:53Z","updated_at":"2015-06-16T21:53:53Z","body":"Agreed, they just take time.  I chip away at them when I have some, which is rarely of late!"}}