{"action":"created","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1162","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1162/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1162/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1162/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1162","id":122510821,"number":1162,"title":"What annotation file is used for GRCh37?","user":{"login":"lindakohn","id":16322210,"avatar_url":"https://avatars.githubusercontent.com/u/16322210?v=3","gravatar_id":"","url":"https://api.github.com/users/lindakohn","html_url":"https://github.com/lindakohn","followers_url":"https://api.github.com/users/lindakohn/followers","following_url":"https://api.github.com/users/lindakohn/following{/other_user}","gists_url":"https://api.github.com/users/lindakohn/gists{/gist_id}","starred_url":"https://api.github.com/users/lindakohn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lindakohn/subscriptions","organizations_url":"https://api.github.com/users/lindakohn/orgs","repos_url":"https://api.github.com/users/lindakohn/repos","events_url":"https://api.github.com/users/lindakohn/events{/privacy}","received_events_url":"https://api.github.com/users/lindakohn/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-12-16T14:09:52Z","updated_at":"2015-12-16T14:17:10Z","closed_at":"2015-12-16T14:13:20Z","body":"Hi!\r\n\r\nWhat annotations is used in the RNA seq GRCh37 and hg38 pipelines? I.e. what's in the ref-transcripts.gtf? "},"comment":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/comments/165121580","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1162#issuecomment-165121580","issue_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1162","id":165121580,"user":{"login":"lindakohn","id":16322210,"avatar_url":"https://avatars.githubusercontent.com/u/16322210?v=3","gravatar_id":"","url":"https://api.github.com/users/lindakohn","html_url":"https://github.com/lindakohn","followers_url":"https://api.github.com/users/lindakohn/followers","following_url":"https://api.github.com/users/lindakohn/following{/other_user}","gists_url":"https://api.github.com/users/lindakohn/gists{/gist_id}","starred_url":"https://api.github.com/users/lindakohn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lindakohn/subscriptions","organizations_url":"https://api.github.com/users/lindakohn/orgs","repos_url":"https://api.github.com/users/lindakohn/repos","events_url":"https://api.github.com/users/lindakohn/events{/privacy}","received_events_url":"https://api.github.com/users/lindakohn/received_events","type":"User","site_admin":false},"created_at":"2015-12-16T14:17:10Z","updated_at":"2015-12-16T14:17:10Z","body":"Thanks!\r\n\r\nIs the STAR alignment guided by the annotations or is it only used by SAILFISH?"}}