{"action":"created","issue":{"url":"https://api.github.com/repos/tbereau/auto_martini/issues/1","labels_url":"https://api.github.com/repos/tbereau/auto_martini/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/tbereau/auto_martini/issues/1/comments","events_url":"https://api.github.com/repos/tbereau/auto_martini/issues/1/events","html_url":"https://github.com/tbereau/auto_martini/issues/1","id":82548282,"number":1,"title":"Assertion `!posix::pthread_mutex_destroy(&m)' failed.","user":{"login":"dudektria","id":37125,"avatar_url":"https://avatars.githubusercontent.com/u/37125?v=3","gravatar_id":"","url":"https://api.github.com/users/dudektria","html_url":"https://github.com/dudektria","followers_url":"https://api.github.com/users/dudektria/followers","following_url":"https://api.github.com/users/dudektria/following{/other_user}","gists_url":"https://api.github.com/users/dudektria/gists{/gist_id}","starred_url":"https://api.github.com/users/dudektria/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dudektria/subscriptions","organizations_url":"https://api.github.com/users/dudektria/orgs","repos_url":"https://api.github.com/users/dudektria/repos","events_url":"https://api.github.com/users/dudektria/events{/privacy}","received_events_url":"https://api.github.com/users/dudektria/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-05-29T19:09:47Z","updated_at":"2015-09-17T07:31:16Z","closed_at":null,"body":"When I run `$ ./auto_martini --smi \"N1=C(N)NN=C1N\" --mol GUA` (taken from the documentation), I receive the following on Ubuntu 15.04 64bits:\r\n\r\n    ;;;; GENERATED WITH auto-martini\r\n    ; INPUT SMILES: N1=C(N)NN=C1N\r\n    ; Tristan Bereau (2014)\r\n\r\n    [moleculetype]\r\n    ; molname       nrexcl\r\n      GUA           2\r\n\r\n    [atoms]\r\n    ; id    type    resnr   residu  atom    cgnr    charge  smiles\r\n      1     SP2     1       GUA     S01     1       0     ; Nc1ncnn1\r\n      2     SP2     1       GUA     S02     2       0     ; Nc1ncnn1\r\n\r\n    [constraints]\r\n    ;  i   j     funct   length\r\n       1   2     1       0.21\r\n\r\n    python: /usr/include/boost/thread/pthread/mutex.hpp:108: boost::mutex::~mutex(): Assertion `!posix::pthread_mutex_destroy(&m)' failed.\r\n    [1]    31433 abort (core dumped)  ./auto_martini --smi \"N1=C(N)NN=C1N\" --mol GUA\r\n\r\nWhat am I doing wrong?\r\n\r\nBest regards,\r\nFelipe Schneider"},"comment":{"url":"https://api.github.com/repos/tbereau/auto_martini/issues/comments/140992005","html_url":"https://github.com/tbereau/auto_martini/issues/1#issuecomment-140992005","issue_url":"https://api.github.com/repos/tbereau/auto_martini/issues/1","id":140992005,"user":{"login":"tbereau","id":806194,"avatar_url":"https://avatars.githubusercontent.com/u/806194?v=3","gravatar_id":"","url":"https://api.github.com/users/tbereau","html_url":"https://github.com/tbereau","followers_url":"https://api.github.com/users/tbereau/followers","following_url":"https://api.github.com/users/tbereau/following{/other_user}","gists_url":"https://api.github.com/users/tbereau/gists{/gist_id}","starred_url":"https://api.github.com/users/tbereau/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tbereau/subscriptions","organizations_url":"https://api.github.com/users/tbereau/orgs","repos_url":"https://api.github.com/users/tbereau/repos","events_url":"https://api.github.com/users/tbereau/events{/privacy}","received_events_url":"https://api.github.com/users/tbereau/received_events","type":"User","site_admin":false},"created_at":"2015-09-17T07:31:16Z","updated_at":"2015-09-17T07:31:16Z","body":"Dear Gloria,\n\nPython 2.7.5 is just fine. What's puzzling me is the lack of information in\nthe error message, there's usually a bit more about what's causing\nproblems.\n\nDo you happen to have ipython, or any other version of python, installed as\nwell? Does it give you the same error message?\n\nYou can also try an alternative branch, see if you get the same error:\n````\ngit checkout refactor\npython auto_martini.py --smi \"CCCC\" --mol NBUT\n````\nLet me know what happens.\n\nBest,\nTristan\n\n\n\nOn Thu, Sep 17, 2015 at 9:05 AM, glosar <notifications@github.com> wrote:\n\n> Dear Tristan,\n> thank you for your reply.\n>\n> I have recently installed the CentOS7 on my\n> workstation and the python version as read from\n> print(sys.version) is:\n>\n> 2.7.5 (default, Jun 24 2015,\n>\n> 00:41:19)\n> [GCC 4.8.3 20140911 (Red Hat 4.8.3-9)]\n>\n> yum info also gives the following details:\n>\n> Name        : python\n> Arch        : x86_64\n> Version     : 2.7.5\n> Release     : 18.el7_1.1\n>\n> May be that I need of another version?\n>\n> Regards,\n> Gloria\n>\n>\n> --\n> Gloria Anna Ada Saracino PhD\n>\n> Center of Nanomedicine and Tissue Engineering\n> (CNTE)\n> A.O. Ospedale Niguarda Ca' Granda\n> Piazza dell'Ospedale Maggiore 3\n> Milan, 20162, Italy\n>\n> tel. +39 02 64447527\n> fax. +39 02 87073821\n>\n> Università degli Studi di Milano-Bicocca\n> Dipartimento di Biotecnologie e Bioscienze\n> Piazza della Scienza 2\n> Milan, 20126, Italy\n>\n> tel. +39 02 6448 3312\n> fax. +39 02 6448 3314\n> On Wed, 16 Sep 2015 23:12:59 -0700\n>  Tristan Bereau <notifications@github.com>\n> wrote:\n> > Hi Gloria,\n> >\n> > I can't reproduce your error message. Which\n> >python version are you using? Maybe you could\n> >try with a different python version, or even\n> >within ipython (if you have it). In the\n> >ipython's command line:\n> > ````\n> > %run auto_martini --smi \"CCCC\" --mol NBUT\n> > ````\n> > Does that provide a more detailed error\n> >message?\n> >\n> > Best,\n> > Tristan\n> >\n> > ---\n> > Reply to this email directly or view it on\n> >GitHub:\n> > https://github.com/tbereau/auto_martini/issues/1#issuecomment-140978184\n>\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/tbereau/auto_martini/issues/1#issuecomment-140988156>.\n>\n"}}