{"action":"created","issue":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/477","labels_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/477/labels{/name}","comments_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/477/comments","events_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/477/events","html_url":"https://github.com/markovmodel/PyEMMA/pull/477","id":98714689,"number":477,"title":"Merge 1.3 release branch into devel","user":{"login":"franknoe","id":6495810,"avatar_url":"https://avatars.githubusercontent.com/u/6495810?v=3","gravatar_id":"","url":"https://api.github.com/users/franknoe","html_url":"https://github.com/franknoe","followers_url":"https://api.github.com/users/franknoe/followers","following_url":"https://api.github.com/users/franknoe/following{/other_user}","gists_url":"https://api.github.com/users/franknoe/gists{/gist_id}","starred_url":"https://api.github.com/users/franknoe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/franknoe/subscriptions","organizations_url":"https://api.github.com/users/franknoe/orgs","repos_url":"https://api.github.com/users/franknoe/repos","events_url":"https://api.github.com/users/franknoe/events{/privacy}","received_events_url":"https://api.github.com/users/franknoe/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-08-03T10:30:56Z","updated_at":"2015-08-03T13:48:46Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/pulls/477","html_url":"https://github.com/markovmodel/PyEMMA/pull/477","diff_url":"https://github.com/markovmodel/PyEMMA/pull/477.diff","patch_url":"https://github.com/markovmodel/PyEMMA/pull/477.patch"},"body":"The previously experimental Estimator/Model framework is now more mature. Merging this feature branch into devel to prepare for the next release."},"comment":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/comments/127241048","html_url":"https://github.com/markovmodel/PyEMMA/pull/477#issuecomment-127241048","issue_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/477","id":127241048,"user":{"login":"gph82","id":7518004,"avatar_url":"https://avatars.githubusercontent.com/u/7518004?v=3","gravatar_id":"","url":"https://api.github.com/users/gph82","html_url":"https://github.com/gph82","followers_url":"https://api.github.com/users/gph82/followers","following_url":"https://api.github.com/users/gph82/following{/other_user}","gists_url":"https://api.github.com/users/gph82/gists{/gist_id}","starred_url":"https://api.github.com/users/gph82/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gph82/subscriptions","organizations_url":"https://api.github.com/users/gph82/orgs","repos_url":"https://api.github.com/users/gph82/repos","events_url":"https://api.github.com/users/gph82/events{/privacy}","received_events_url":"https://api.github.com/users/gph82/received_events","type":"User","site_admin":false},"created_at":"2015-08-03T13:48:46Z","updated_at":"2015-08-03T13:48:46Z","body":"we've already started to look into this 4-eyed, not sure if our problem\nor mdtraj's. Updates will follow\n\nOn 08/03/2015 03:39 PM, Frank Noe wrote:\n> OK, everything works apart from this failure on Windows, which is due to\n> a non-closed file. @fabian-paul <https://github.com/fabian-paul> and\n> @gph82 <https://github.com/gph82> please look into it. You can fix it on\n> the branch FN_merge_1.3_into_devel and just re-push that, which will\n> trigger a new round of tests.\n> \n> ======================================================================\n> ERROR: test suite for <class 'pyemma.coordinates.tests.test_featurizer.TestFeaturizer'>\n> ----------------------------------------------------------------------\n> Traceback (most recent call last):\n>   File \"C:\\Python27_32\\lib\\site-packages\\nose\\suite.py\", line 209, in run\n>     self.setUp()\n>   File \"C:\\Python27_32\\lib\\site-packages\\nose\\suite.py\", line 292, in setUp\n>     self.setupContext(ancestor)\n>   File \"C:\\Python27_32\\lib\\site-packages\\nose\\suite.py\", line 315, in setupContext\n>     try_run(context, names)\n>   File \"C:\\Python27_32\\lib\\site-packages\\nose\\util.py\", line 471, in try_run\n>     return func()\n>   File \"C:\\projects\\pyemma\\pyemma\\coordinates\\tests\\test_featurizer.py\", line 92, in setUpClass\n>     traj.save(cls.asn_leu_traj)\n>   File \"C:\\Python27_32\\lib\\site-packages\\mdtraj-1.4.2-py2.7-win32.egg\\mdtraj\\core\\trajectory.py\", line 1228, in save\n>     return saver(filename, **kwargs)\n>   File \"C:\\Python27_32\\lib\\site-packages\\mdtraj-1.4.2-py2.7-win32.egg\\mdtraj\\core\\trajectory.py\", line 1333, in save_xtc\n>     with XTCTrajectoryFile(filename, 'w', force_overwrite=force_overwrite) as f:\n>   File \"xtc.pyx\", line 233, in xtc.XTCTrajectoryFile.__cinit__ (mdtraj/formats/xtc/xtc.c:2794)\n> WindowsError: [Error 32] The process cannot access the file because it is being used by another process: 'c:\\\\users\\\\appveyor\\\\appdata\\\\local\\\\temp\\\\1\\\\tmp4nivaf.xtc'\n> \n> ----------------------------------------------------------------------\n> Ran 396 tests in 65.481s\n> \n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/markovmodel/PyEMMA/pull/477#issuecomment-127237142>.\n> \n\n-- \nDr. Guillermo Pérez-Hernández\nFreie Universität Berlin\nInstitute for Mathematics\nArnimallee 6\nD-14195 Berlin\ntel       0049 30 838 75776\nhttp://userpage.fu-berlin.de/gph82/\n--\n"}}