{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/server/issues/591","labels_url":"https://api.github.com/repos/ga4gh/server/issues/591/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/server/issues/591/comments","events_url":"https://api.github.com/repos/ga4gh/server/issues/591/events","html_url":"https://github.com/ga4gh/server/issues/591","id":103553061,"number":591,"title":"SearchReads takes reference name, not ID","user":{"login":"macieksmuga","id":6685511,"avatar_url":"https://avatars.githubusercontent.com/u/6685511?v=3","gravatar_id":"","url":"https://api.github.com/users/macieksmuga","html_url":"https://github.com/macieksmuga","followers_url":"https://api.github.com/users/macieksmuga/followers","following_url":"https://api.github.com/users/macieksmuga/following{/other_user}","gists_url":"https://api.github.com/users/macieksmuga/gists{/gist_id}","starred_url":"https://api.github.com/users/macieksmuga/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/macieksmuga/subscriptions","organizations_url":"https://api.github.com/users/macieksmuga/orgs","repos_url":"https://api.github.com/users/macieksmuga/repos","events_url":"https://api.github.com/users/macieksmuga/events{/privacy}","received_events_url":"https://api.github.com/users/macieksmuga/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/ga4gh/server/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/ga4gh/server/labels/ready","name":"ready","color":"ededed"}],"state":"closed","locked":false,"assignee":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/ga4gh/server/milestones/4","html_url":"https://github.com/ga4gh/server/milestones/baseline","labels_url":"https://api.github.com/repos/ga4gh/server/milestones/4/labels","id":1277882,"number":4,"title":"baseline","description":"","creator":{"login":"benedictpaten","id":593440,"avatar_url":"https://avatars.githubusercontent.com/u/593440?v=3","gravatar_id":"","url":"https://api.github.com/users/benedictpaten","html_url":"https://github.com/benedictpaten","followers_url":"https://api.github.com/users/benedictpaten/followers","following_url":"https://api.github.com/users/benedictpaten/following{/other_user}","gists_url":"https://api.github.com/users/benedictpaten/gists{/gist_id}","starred_url":"https://api.github.com/users/benedictpaten/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/benedictpaten/subscriptions","organizations_url":"https://api.github.com/users/benedictpaten/orgs","repos_url":"https://api.github.com/users/benedictpaten/repos","events_url":"https://api.github.com/users/benedictpaten/events{/privacy}","received_events_url":"https://api.github.com/users/benedictpaten/received_events","type":"User","site_admin":false},"open_issues":8,"closed_issues":2,"state":"open","created_at":"2015-08-28T16:20:20Z","updated_at":"2015-09-02T13:13:15Z","due_on":null,"closed_at":null},"comments":2,"created_at":"2015-08-27T17:03:15Z","updated_at":"2015-09-02T13:13:15Z","closed_at":"2015-09-02T13:13:15Z","body":"SearchReads should take a referenceID (per schemas), but uses reference name instead. Thus, the following query (against my local server instance, yours may take different names & ID's) fails:\r\n\r\n    ga4gh_client -vv reads-search http://localhost:8000 --readGroupId=\"YnJjYTE6MWtnLWxvdy1jb3ZlcmFnZTpCUkNBMV9IRzAwMDk2\" --start=0 --end=200 --referenceId=\"aGczNzpoczM3ZDVfY2hyMTdfNDExOTYzMTItNDEyNzc1MDA=\"\r\n\r\nwhile this one works:\r\n\r\n    ga4gh_client reads-search http://localhost:8000 --readGroupId=\"YnJjYTE6MWtnLWxvdy1jb3ZlcmFnZTpCUkNBMV9IRzAwMDk2\" --start=0 --end=200 --referenceId=\"ref_brca1\"\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/ga4gh/server/issues/comments/137072594","html_url":"https://github.com/ga4gh/server/issues/591#issuecomment-137072594","issue_url":"https://api.github.com/repos/ga4gh/server/issues/591","id":137072594,"user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"created_at":"2015-09-02T13:13:15Z","updated_at":"2015-09-02T13:13:15Z","body":"Fixed in #597"}}