{"action":"created","issue":{"url":"https://api.github.com/repos/ericmjl/genotype-network/issues/18","labels_url":"https://api.github.com/repos/ericmjl/genotype-network/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/ericmjl/genotype-network/issues/18/comments","events_url":"https://api.github.com/repos/ericmjl/genotype-network/issues/18/events","html_url":"https://github.com/ericmjl/genotype-network/issues/18","id":96908480,"number":18,"title":"Feature Request: Network cycles code","user":{"login":"ericmjl","id":2631566,"avatar_url":"https://avatars.githubusercontent.com/u/2631566?v=3","gravatar_id":"","url":"https://api.github.com/users/ericmjl","html_url":"https://github.com/ericmjl","followers_url":"https://api.github.com/users/ericmjl/followers","following_url":"https://api.github.com/users/ericmjl/following{/other_user}","gists_url":"https://api.github.com/users/ericmjl/gists{/gist_id}","starred_url":"https://api.github.com/users/ericmjl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ericmjl/subscriptions","organizations_url":"https://api.github.com/users/ericmjl/orgs","repos_url":"https://api.github.com/users/ericmjl/repos","events_url":"https://api.github.com/users/ericmjl/events{/privacy}","received_events_url":"https://api.github.com/users/ericmjl/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/ericmjl/genotype-network/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"Chevalant","id":12633362,"avatar_url":"https://avatars.githubusercontent.com/u/12633362?v=3","gravatar_id":"","url":"https://api.github.com/users/Chevalant","html_url":"https://github.com/Chevalant","followers_url":"https://api.github.com/users/Chevalant/followers","following_url":"https://api.github.com/users/Chevalant/following{/other_user}","gists_url":"https://api.github.com/users/Chevalant/gists{/gist_id}","starred_url":"https://api.github.com/users/Chevalant/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Chevalant/subscriptions","organizations_url":"https://api.github.com/users/Chevalant/orgs","repos_url":"https://api.github.com/users/Chevalant/repos","events_url":"https://api.github.com/users/Chevalant/events{/privacy}","received_events_url":"https://api.github.com/users/Chevalant/received_events","type":"User","site_admin":false},"milestone":null,"comments":3,"created_at":"2015-07-23T21:23:19Z","updated_at":"2015-07-24T19:38:11Z","closed_at":null,"body":"Need to write function under genotype network class file that identifies network cycles."},"comment":{"url":"https://api.github.com/repos/ericmjl/genotype-network/issues/comments/124667974","html_url":"https://github.com/ericmjl/genotype-network/issues/18#issuecomment-124667974","issue_url":"https://api.github.com/repos/ericmjl/genotype-network/issues/18","id":124667974,"user":{"login":"ericmjl","id":2631566,"avatar_url":"https://avatars.githubusercontent.com/u/2631566?v=3","gravatar_id":"","url":"https://api.github.com/users/ericmjl","html_url":"https://github.com/ericmjl","followers_url":"https://api.github.com/users/ericmjl/followers","following_url":"https://api.github.com/users/ericmjl/following{/other_user}","gists_url":"https://api.github.com/users/ericmjl/gists{/gist_id}","starred_url":"https://api.github.com/users/ericmjl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ericmjl/subscriptions","organizations_url":"https://api.github.com/users/ericmjl/orgs","repos_url":"https://api.github.com/users/ericmjl/repos","events_url":"https://api.github.com/users/ericmjl/events{/privacy}","received_events_url":"https://api.github.com/users/ericmjl/received_events","type":"User","site_admin":false},"created_at":"2015-07-24T19:38:11Z","updated_at":"2015-07-24T19:38:11Z","body":"FWIW, `root` is an optional parameter. \r\n\r\nAs for the data type, I think the logical choice is to use the amino acid sequence as the node in the graph definition, rather than accession number. After all, what's being passed into the genotype network constructor is a FASTA file of amino acid sequences. "}}