{"action":"created","issue":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/18","labels_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18/comments","events_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18/events","html_url":"https://github.com/cjfields/redmine-test/issues/18","id":107444090,"number":18,"title":"Unimplemented methods in Bio::Assembly classes","user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Category:%20Core%20Components","name":"Category: Core Components","color":"006699"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Priority:%20Normal","name":"Priority: Normal","color":"666600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Status:%20In%20Progress","name":"Status: In Progress","color":"CC6600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Tracker:%20Bug","name":"Tracker: Bug","color":"FF0000"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/cjfields/redmine-test/milestones/1","html_url":"https://github.com/cjfields/redmine-test/milestones/main-trunk","labels_url":"https://api.github.com/repos/cjfields/redmine-test/milestones/1/labels","id":1315666,"number":1,"title":"main-trunk","description":null,"creator":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":0,"state":"open","created_at":"2015-09-21T04:19:26Z","updated_at":"2015-09-21T04:49:11Z","due_on":null,"closed_at":null},"comments":8,"created_at":"2015-09-21T04:49:07Z","updated_at":"2015-09-21T04:49:11Z","closed_at":null,"body":"---\n\n\nAuthor Name: **Nelson empty** (Nelson empty)\nOriginal Redmine Issue: 2021, https://redmine.open-bio.org/issues/2021\nOriginal Date: 2006-06-09\nOriginal Assignee: Chris Fields\n\n---\n\nThe Bio::Assembly::Contig object is supposed to be Bio::Align::AlignI compliant. However, when one tries to get a slice of the multialignment for a contig object, an error is thrown. Here’s an example -\n\nmy $contig = Bio::Assembly::Contig-\\>new(-id=\\>‘1’)\n\nmy $contig\\_ls = Bio::LocatableSeq-\\>new(-seq=\\>‘TTCAG-TGATGTCAAAA’, -alphabet=\\>‘dna’);\n\n$contig-\\>set\\_consensus\\_sequence($contig\\_ls);\n\nmy $aln = $contig-\\>slice($start, $end);\n\nMSG: Abstract method “Bio::Assembly::Contig::slice” is not implemented by package Bio::Assembly::Contig.\nThis is not your fault - author of Bio::Assembly::Contig should be blamed!\n\n\n\n\n"},"comment":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/comments/141877369","html_url":"https://github.com/cjfields/redmine-test/issues/18#issuecomment-141877369","issue_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18","id":141877369,"user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"created_at":"2015-09-21T04:49:11Z","updated_at":"2015-09-21T04:49:11Z","body":"---\n\nOriginal Redmine Comment\nAuthor Name: **Chris Fields** (Chris Fields)\nOriginal Date: 2008-11-10T08:38:46Z\n\n---\n\n**\\* Bug 2646 has been marked as a duplicate of this bug.**\\*\n\n"}}