{"action":"created","issue":{"url":"https://api.github.com/repos/genome/gms/issues/168","labels_url":"https://api.github.com/repos/genome/gms/issues/168/labels{/name}","comments_url":"https://api.github.com/repos/genome/gms/issues/168/comments","events_url":"https://api.github.com/repos/genome/gms/issues/168/events","html_url":"https://github.com/genome/gms/issues/168","id":59377379,"number":168,"title":"Use of qw(...) as parentheses is deprecated","user":{"login":"gatoravi","id":764948,"avatar_url":"https://avatars.githubusercontent.com/u/764948?v=3","gravatar_id":"","url":"https://api.github.com/users/gatoravi","html_url":"https://github.com/gatoravi","followers_url":"https://api.github.com/users/gatoravi/followers","following_url":"https://api.github.com/users/gatoravi/following{/other_user}","gists_url":"https://api.github.com/users/gatoravi/gists{/gist_id}","starred_url":"https://api.github.com/users/gatoravi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gatoravi/subscriptions","organizations_url":"https://api.github.com/users/gatoravi/orgs","repos_url":"https://api.github.com/users/gatoravi/repos","events_url":"https://api.github.com/users/gatoravi/events{/privacy}","received_events_url":"https://api.github.com/users/gatoravi/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/genome/gms/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/genome/gms/labels/testing%20merge","name":"testing merge","color":"fbca04"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-03-01T04:12:14Z","updated_at":"2015-03-02T21:36:18Z","closed_at":null,"body":"Starting a ref-align build gives this error.\r\n```\r\ngmsuser@clia1 /opt/gms/TB3QU62/sw/genome/lib/perl/Genome/Model/Build (gms-pub-2015.02.22)> genome model build start hcc1395-tumor-refalign-wgs\r\nUsing libraries at /opt/gms/TB3QU62/sw/genome/lib/perl\r\n'models' may require verification...\r\nResolving parameter 'models' from command argument 'hcc1395-tumor-refalign-wgs'... found 1\r\nTrying to start #1: hcc1395-tumor-refalign-wgs (2891325873)...\r\nException is Error while autoloading with 'use Genome::Model::Build::ReferenceAlignment': Error while autoloading with 'use Genome::Model::Build::RunsDV2': Use of qw(...) as parentheses is deprecated at /opt/gms/TB3QU62/sw/genome/lib/perl/Genome/Model/Build/RunsDV2.pm line 46.\r\nCompilation failed in require at (eval 2024) line 2.\r\nBEGIN failed--compilation aborted at (eval 2024) line 2.\r\n at /opt/gms/TB3QU62/sw/ur/lib/UR/ModuleLoader.pm line 83\r\nCompilation failed in require at (eval 2021) line 2.\r\nBEGIN failed--compilation aborted at (eval 2021) line 2.\r\n at /opt/gms/TB3QU62/sw/ur/lib/UR/ModuleLoader.pm line 83\r\nERROR: Died at /opt/gms/TB3QU62/sw/ur/lib/Command/V2.pm line 332.\r\nRemoving remaining resource lock: 'build_requested/2891325873' at /opt/gms/TB3QU62/sw/genome/lib/perl/Genome/Sys/Lock/FileBackend.pm line 244.\r\n```"},"comment":{"url":"https://api.github.com/repos/genome/gms/issues/comments/76830602","html_url":"https://github.com/genome/gms/issues/168#issuecomment-76830602","issue_url":"https://api.github.com/repos/genome/gms/issues/168","id":76830602,"user":{"login":"gatoravi","id":764948,"avatar_url":"https://avatars.githubusercontent.com/u/764948?v=3","gravatar_id":"","url":"https://api.github.com/users/gatoravi","html_url":"https://github.com/gatoravi","followers_url":"https://api.github.com/users/gatoravi/followers","following_url":"https://api.github.com/users/gatoravi/following{/other_user}","gists_url":"https://api.github.com/users/gatoravi/gists{/gist_id}","starred_url":"https://api.github.com/users/gatoravi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gatoravi/subscriptions","organizations_url":"https://api.github.com/users/gatoravi/orgs","repos_url":"https://api.github.com/users/gatoravi/repos","events_url":"https://api.github.com/users/gatoravi/events{/privacy}","received_events_url":"https://api.github.com/users/gatoravi/received_events","type":"User","site_admin":false},"created_at":"2015-03-02T21:36:18Z","updated_at":"2015-03-02T21:36:18Z","body":"This commit https://github.com/genome/genome/commit/f4c429d52584a3ad69f5a88b788865a7b68a3cc4 by @davidlmorton does turn fatal warnings on, why is this an issue on SGMS and not inside TGI ?"}}