{"action":"created","issue":{"url":"https://api.github.com/repos/bridgedb/BridgeDb/issues/13","labels_url":"https://api.github.com/repos/bridgedb/BridgeDb/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/bridgedb/BridgeDb/issues/13/comments","events_url":"https://api.github.com/repos/bridgedb/BridgeDb/issues/13/events","html_url":"https://github.com/bridgedb/BridgeDb/issues/13","id":97497420,"number":13,"title":"Where is the BridgeDB ontology?","user":{"login":"stain","id":253413,"avatar_url":"https://avatars.githubusercontent.com/u/253413?v=3","gravatar_id":"","url":"https://api.github.com/users/stain","html_url":"https://github.com/stain","followers_url":"https://api.github.com/users/stain/followers","following_url":"https://api.github.com/users/stain/following{/other_user}","gists_url":"https://api.github.com/users/stain/gists{/gist_id}","starred_url":"https://api.github.com/users/stain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stain/subscriptions","organizations_url":"https://api.github.com/users/stain/orgs","repos_url":"https://api.github.com/users/stain/repos","events_url":"https://api.github.com/users/stain/events{/privacy}","received_events_url":"https://api.github.com/users/stain/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":9,"created_at":"2015-07-27T16:04:26Z","updated_at":"2015-08-03T12:52:24Z","closed_at":null,"body":"Two namespaces:\r\n* http://openphacts.cs.man.ac.uk:9090/ontology/DataSource.owl#\r\n* http://vocabularies.bridgedb.org/ops#\r\n\r\n.. used for terms like `linksetJustification`, `subjectsDatatype` and more BridgeDb-specific like `hasIdentifiersOrgPattern` and `systemCode`.\r\n\r\nI don't know if these two namespaces are the same or not. But the fact is that none of them resolve (both give 404), yet they are used here:\r\n\r\n* http://www.openphacts.org/specs/2013/WD-datadesc-20130912/\r\n* https://github.com/bridgedb/BridgeDb/blob/OpenPHACTS/develop/org.bridgedb.rdf/src/org/bridgedb/rdf/constants/BridgeDBConstants.java\r\n* https://github.com/bridgedb/BridgeDb/blob/OpenPHACTS/develop/org.bridgedb.rdf/resources/IdentifiersOrgDataSource.ttl\r\n* http://data.openphacts.org/1.5/ims/linksets/ConceptWiki/enzyme_expasy_org.ttl\r\n\r\nWhich one should it be? Has there been any attempt to create the ontology? Did `vocabularies.bridgedb.org` use to resolve to something else than an empty Drupal site?\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/bridgedb/BridgeDb/issues/comments/127221522","html_url":"https://github.com/bridgedb/BridgeDb/issues/13#issuecomment-127221522","issue_url":"https://api.github.com/repos/bridgedb/BridgeDb/issues/13","id":127221522,"user":{"login":"stain","id":253413,"avatar_url":"https://avatars.githubusercontent.com/u/253413?v=3","gravatar_id":"","url":"https://api.github.com/users/stain","html_url":"https://github.com/stain","followers_url":"https://api.github.com/users/stain/followers","following_url":"https://api.github.com/users/stain/following{/other_user}","gists_url":"https://api.github.com/users/stain/gists{/gist_id}","starred_url":"https://api.github.com/users/stain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stain/subscriptions","organizations_url":"https://api.github.com/users/stain/orgs","repos_url":"https://api.github.com/users/stain/repos","events_url":"https://api.github.com/users/stain/events{/privacy}","received_events_url":"https://api.github.com/users/stain/received_events","type":"User","site_admin":false},"created_at":"2015-08-03T12:52:24Z","updated_at":"2015-08-03T12:52:24Z","body":"So I changed `hasUrlPattern` to `hasPrimaryUriPattern`, a subproperty of `hasUriPattern`.\r\n\r\nThe `primary` property is [something different](https://github.com/bridgedb/BridgeDb/blob/OpenPHACTS/develop/org.bridgedb/src/org/bridgedb/DataSource.java#L815), that I'll leave as is.\r\n\r\n"}}