{"action":"created","comment":{"url":"https://api.github.com/repos/broadinstitute/hellbender/pulls/comments/39583855","id":39583855,"diff_hunk":"@@ -0,0 +1,40 @@\n+package org.broadinstitute.hellbender.utils.read;\n+\n+import htsjdk.samtools.SAMFileHeader;\n+import htsjdk.samtools.SAMRecord;\n+import org.bdgenomics.adam.converters.AlignmentRecordConverter;\n+import org.bdgenomics.adam.models.SAMFileHeaderWritable;\n+import org.bdgenomics.formats.avro.AlignmentRecord;\n+\n+import java.util.UUID;\n+\n+/**\n+ * Implementation of the {@link GATKRead} interface for the {@link AlignmentRecord} class.\n+ *\n+ * This adapter wraps an {@link AlignmentRecord} by first converting to a {@link SAMRecord} and then passing through\n+ * to {@link SAMRecordToGATKReadAdapter}.\n+ */\n+public final class BDGAlignmentRecordToGATKReadAdapter extends SAMRecordToGATKReadAdapter {\n+    private static final long serialVersionUID = 1L;\n+\n+    private final AlignmentRecord alignmentRecord;\n+\n+    public BDGAlignmentRecordToGATKReadAdapter( final AlignmentRecord alignmentRecord) {\n+        this(alignmentRecord, null);\n+    }\n+\n+    public BDGAlignmentRecordToGATKReadAdapter( final AlignmentRecord alignmentRecord, final SAMFileHeaderWritable header) 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this `GATKRead` impl take in a `SAMFileHeaderWritable` or a `SAMFileHeader`?","created_at":"2015-09-16T00:49:00Z","updated_at":"2015-09-16T00:49:00Z","html_url":"https://github.com/broadinstitute/hellbender/pull/888#discussion_r39583855","pull_request_url":"https://api.github.com/repos/broadinstitute/hellbender/pulls/888","_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/hellbender/pulls/comments/39583855"},"html":{"href":"https://github.com/broadinstitute/hellbender/pull/888#discussion_r39583855"},"pull_request":{"href":"https://api.github.com/repos/broadinstitute/hellbender/pulls/888"}}},"pull_request":{"url":"https://api.github.com/repos/broadinstitute/hellbender/pulls/888","id":44737066,"html_url":"https://github.com/broadinstitute/hellbender/pull/888","diff_url":"https://github.com/broadinstitute/hellbender/pull/888.diff","patch_url":"https://github.com/broadinstitute/hellbender/pull/888.patch","issue_url":"https://api.github.com/repos/broadinstitute/hellbender/issues/888","number":888,"state":"open","locked":false,"title":"Initial ADAM Parquet I/O support","user":{"login":"laserson","id":118141,"avatar_url":"https://avatars.githubusercontent.com/u/118141?v=3","gravatar_id":"","url":"https://api.github.com/users/laserson","html_url":"https://github.com/laserson","followers_url":"https://api.github.com/users/laserson/followers","following_url":"https://api.github.com/users/laserson/following{/other_user}","gists_url":"https://api.github.com/users/laserson/gists{/gist_id}","starred_url":"https://api.github.com/users/laserson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laserson/subscriptions","organizations_url":"https://api.github.com/users/laserson/orgs","repos_url":"https://api.github.com/users/laserson/repos","events_url":"https://api.github.com/users/laserson/events{/privacy}","received_events_url":"https://api.github.com/users/laserson/received_events","type":"User","site_admin":false},"body":"Add support for reading/writing Parquet via ADAM/BDG `AlignmentRecord` type.\r\n\r\nNot 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