{"action":"created","issue":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2410","labels_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2410/labels{/name}","comments_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2410/comments","events_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2410/events","html_url":"https://github.com/Homebrew/homebrew-science/pull/2410","id":88094710,"number":2410,"title":"PEAT 1.1 (new formula w/ tests)","user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/Bioinformatics","name":"Bioinformatics","color":"207de5"},{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/New%20formula","name":"New formula","color":"444444"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":13,"created_at":"2015-06-14T01:08:56Z","updated_at":"2015-08-04T10:01:07Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/2410","html_url":"https://github.com/Homebrew/homebrew-science/pull/2410","diff_url":"https://github.com/Homebrew/homebrew-science/pull/2410.diff","patch_url":"https://github.com/Homebrew/homebrew-science/pull/2410.patch"},"body":"PEAT, a fast and highly accurate adapter-trimming algorithm, designed specifically for paired-end sequencing. PEAT requires no a priori adapter sequence and significantly outperforms other widely used adapter trimmers in both simulated and real life paired-end sequencing libraries. Moreover, in order to process single-end sequencing data, we also provide single-end trimmer in PEAT.\r\n"},"comment":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/comments/127552864","html_url":"https://github.com/Homebrew/homebrew-science/pull/2410#issuecomment-127552864","issue_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2410","id":127552864,"user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"created_at":"2015-08-04T10:01:07Z","updated_at":"2015-08-04T10:01:07Z","body":"I just tried to build PEAT 1.2.2 and still have the same problem:\r\n\r\n```\r\nCMakeFiles/bin/PEAT.dir/src/main.cpp.o: In function `paired_end::main(int, char**)':\r\nmain.cpp:(.text.startup+0xed6): undefined reference to `IhandlerFactory<Fastq, std::tuple<std::__cxx11::basic_string<cha\r\nr, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocat\r\nor<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<\r\nchar, std::char_traits<char>, std::allocator<char> > > >::get_ihandler_read(std::vector<std::__cxx11::basic_string<char,\r\n std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>,\r\n std::allocator<char> > > >, std::map<int, std::vector<Fastq<std::tuple<std::__cxx11::basic_string<char, std::char_trait\r\ns<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_\r\n_cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_tr\r\naits<char>, std::allocator<char> > > >, std::allocator<Fastq<std::tuple<std::__cxx11::basic_string<char, std::char_trait\r\ns<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::_\r\n_cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_tr\r\naits<char>, std::allocator<char> > > > > >, std::less<int>, std::allocator<std::pair<int const, std::vector<Fastq<std::t\r\nuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, s\r\ntd::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<c\r\nhar> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, std::allocator<Fastq<std::t\r\nuple<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, s\r\ntd::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<c\r\nhar> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > > > > > >&)'\r\nCMakeFiles/bin/PEAT.dir/src/main.cpp.o: In function `single_end::main(int, char**)':\r\n```"}}