{"action":"created","issue":{"url":"https://api.github.com/repos/faircloth-lab/phyluce/issues/34","labels_url":"https://api.github.com/repos/faircloth-lab/phyluce/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/faircloth-lab/phyluce/issues/34/comments","events_url":"https://api.github.com/repos/faircloth-lab/phyluce/issues/34/events","html_url":"https://github.com/faircloth-lab/phyluce/issues/34","id":81078442,"number":34,"title":"Phyluce_align_add_missing_data_designators","user":{"login":"mateusf","id":9685105,"avatar_url":"https://avatars.githubusercontent.com/u/9685105?v=3","gravatar_id":"","url":"https://api.github.com/users/mateusf","html_url":"https://github.com/mateusf","followers_url":"https://api.github.com/users/mateusf/followers","following_url":"https://api.github.com/users/mateusf/following{/other_user}","gists_url":"https://api.github.com/users/mateusf/gists{/gist_id}","starred_url":"https://api.github.com/users/mateusf/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mateusf/subscriptions","organizations_url":"https://api.github.com/users/mateusf/orgs","repos_url":"https://api.github.com/users/mateusf/repos","events_url":"https://api.github.com/users/mateusf/events{/privacy}","received_events_url":"https://api.github.com/users/mateusf/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-05-26T18:23:39Z","updated_at":"2015-05-26T19:44:34Z","closed_at":null,"body":"I'm getting the following error when trying to run phyluce_align_add_missing_data_designators:\r\n\r\nTraceback (most recent call last):\r\n  File \"/home/camila/anaconda/bin/phyluce_align_add_missing_data_designators\", line 237, in <module>\r\n    main()\r\n  File \"/home/camila/anaconda/bin/phyluce_align_add_missing_data_designators\", line 222, in main\r\n    results = pool.map(add_designators, work)\r\n  File \"/home/camila/anaconda/lib/python2.7/multiprocessing/pool.py\", line 272, in map\r\n    return self.map_async(func, iterable, chunksize).get()\r\n  File \"/home/camila/anaconda/lib/python2.7/multiprocessing/pool.py\", line 560, in get\r\n    raise self._value\r\nValueError: list.remove(x): x not in list\r\n\r\nI've tried to change the number of cores (I've a Intel i7 3770K) from 1 to 8, and it didn't worked. \r\nWhat you recommend to do?\r\nBest,\r\nMateus"},"comment":{"url":"https://api.github.com/repos/faircloth-lab/phyluce/issues/comments/105645017","html_url":"https://github.com/faircloth-lab/phyluce/issues/34#issuecomment-105645017","issue_url":"https://api.github.com/repos/faircloth-lab/phyluce/issues/34","id":105645017,"user":{"login":"brantfaircloth","id":54026,"avatar_url":"https://avatars.githubusercontent.com/u/54026?v=3","gravatar_id":"","url":"https://api.github.com/users/brantfaircloth","html_url":"https://github.com/brantfaircloth","followers_url":"https://api.github.com/users/brantfaircloth/followers","following_url":"https://api.github.com/users/brantfaircloth/following{/other_user}","gists_url":"https://api.github.com/users/brantfaircloth/gists{/gist_id}","starred_url":"https://api.github.com/users/brantfaircloth/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brantfaircloth/subscriptions","organizations_url":"https://api.github.com/users/brantfaircloth/orgs","repos_url":"https://api.github.com/users/brantfaircloth/repos","events_url":"https://api.github.com/users/brantfaircloth/events{/privacy}","received_events_url":"https://api.github.com/users/brantfaircloth/received_events","type":"User","site_admin":false},"created_at":"2015-05-26T19:44:34Z","updated_at":"2015-05-26T19:44:34Z","body":"No problem.  The git thing I have to fix - it's called at the beginning of logging to report the hash number of a given commit... but it sometimes causes problems when (1) people don't have git installed or (2) in your case - you have git, but it's erroring out... although I don't know why.  I want to keep the git part for my own purposes (because i often work from a git version of the code, this is the only way i can track what code ran what analysis).\r\n\r\nI can't take a look at this right now, but will try to square away soon.  in meantime, if you discover a solution, let me know - would be happy to implement."}}