{"action":"created","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1018","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1018/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1018/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1018/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1018","id":106761710,"number":1018,"title":"ensemble numpass confusion","user":{"login":"parlar","id":7408977,"avatar_url":"https://avatars.githubusercontent.com/u/7408977?v=3","gravatar_id":"","url":"https://api.github.com/users/parlar","html_url":"https://github.com/parlar","followers_url":"https://api.github.com/users/parlar/followers","following_url":"https://api.github.com/users/parlar/following{/other_user}","gists_url":"https://api.github.com/users/parlar/gists{/gist_id}","starred_url":"https://api.github.com/users/parlar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/parlar/subscriptions","organizations_url":"https://api.github.com/users/parlar/orgs","repos_url":"https://api.github.com/users/parlar/repos","events_url":"https://api.github.com/users/parlar/events{/privacy}","received_events_url":"https://api.github.com/users/parlar/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2015-09-16T12:17:23Z","updated_at":"2015-09-22T10:22:48Z","closed_at":null,"body":"When running ensemble variant calling using \"numpass: 1\" I notice that variants identified by only one caller but which fail filters still become included in the final call as PASS. Perhaps true also for higher numpass settings? Is this by intention? if so, the name of the setting (numpass) becomes somewhat confusing.\r\n\r\nInformation that would be great to have in the ensemble vcf  INFO field is also what callers that actually picked up a variant.\r\n\r\ncheers, Pär"},"comment":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/comments/142240342","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1018#issuecomment-142240342","issue_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1018","id":142240342,"user":{"login":"schelhorn","id":5024959,"avatar_url":"https://avatars.githubusercontent.com/u/5024959?v=3","gravatar_id":"","url":"https://api.github.com/users/schelhorn","html_url":"https://github.com/schelhorn","followers_url":"https://api.github.com/users/schelhorn/followers","following_url":"https://api.github.com/users/schelhorn/following{/other_user}","gists_url":"https://api.github.com/users/schelhorn/gists{/gist_id}","starred_url":"https://api.github.com/users/schelhorn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/schelhorn/subscriptions","organizations_url":"https://api.github.com/users/schelhorn/orgs","repos_url":"https://api.github.com/users/schelhorn/repos","events_url":"https://api.github.com/users/schelhorn/events{/privacy}","received_events_url":"https://api.github.com/users/schelhorn/received_events","type":"User","site_admin":false},"created_at":"2015-09-22T10:22:48Z","updated_at":"2015-09-22T10:22:48Z","body":"We'd like to have a look at it, too, +1"}}