{"action":"created","issue":{"url":"https://api.github.com/repos/CVNRneuroimaging/infrastructure/issues/92","labels_url":"https://api.github.com/repos/CVNRneuroimaging/infrastructure/issues/92/labels{/name}","comments_url":"https://api.github.com/repos/CVNRneuroimaging/infrastructure/issues/92/comments","events_url":"https://api.github.com/repos/CVNRneuroimaging/infrastructure/issues/92/events","html_url":"https://github.com/CVNRneuroimaging/infrastructure/issues/92","id":46627007,"number":92,"title":"OS X bug solved: curl & libcurl are killed by $DYLD_LIBRARY_PATH from matlab install","user":{"login":"stowler","id":436181,"avatar_url":"https://avatars.githubusercontent.com/u/436181?v=3","gravatar_id":"","url":"https://api.github.com/users/stowler","html_url":"https://github.com/stowler","followers_url":"https://api.github.com/users/stowler/followers","following_url":"https://api.github.com/users/stowler/following{/other_user}","gists_url":"https://api.github.com/users/stowler/gists{/gist_id}","starred_url":"https://api.github.com/users/stowler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stowler/subscriptions","organizations_url":"https://api.github.com/users/stowler/orgs","repos_url":"https://api.github.com/users/stowler/repos","events_url":"https://api.github.com/users/stowler/events{/privacy}","received_events_url":"https://api.github.com/users/stowler/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"stowler","id":436181,"avatar_url":"https://avatars.githubusercontent.com/u/436181?v=3","gravatar_id":"","url":"https://api.github.com/users/stowler","html_url":"https://github.com/stowler","followers_url":"https://api.github.com/users/stowler/followers","following_url":"https://api.github.com/users/stowler/following{/other_user}","gists_url":"https://api.github.com/users/stowler/gists{/gist_id}","starred_url":"https://api.github.com/users/stowler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stowler/subscriptions","organizations_url":"https://api.github.com/users/stowler/orgs","repos_url":"https://api.github.com/users/stowler/repos","events_url":"https://api.github.com/users/stowler/events{/privacy}","received_events_url":"https://api.github.com/users/stowler/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2014-10-23T13:55:39Z","updated_at":"2015-01-21T16:32:12Z","closed_at":"2015-01-21T16:32:12Z","body":"I'll add detailed notes later, but FYI for now: matlab OS X installation adds $DYLD_LIBRARY_PATH to the environment, which quietly disables curl and anything that depends on libcurl, including git. This results in a variety of system problems that have a non-obvious relationship to the matlab install. I observed this on my convenience sample of Mavericks and Yosemite hosts. \r\n\r\nI successful resolved by steps:\r\n\r\n1. reboot after removing $DYLD_LIBRARY_PATH from the environment\r\n2. re-install development packages whose post-matlab installation may have been adversely affected by broken curl/libcurl (xcode, xcode command-line tools, macports, R) \r\n3. hand-hold resyncing of git repos and any file collections that depended on curl\r\n\r\nI'm calling this solved because we are not currently dependent on mac-native matlab, thus we're not functionally impacted by the matlab problems caused by the resolution. In reality this is a work-around.\r\n\r\nI'll paste in more detailed notes and close this issue when I'm less crunched for time."},"comment":{"url":"https://api.github.com/repos/CVNRneuroimaging/infrastructure/issues/comments/70869904","html_url":"https://github.com/CVNRneuroimaging/infrastructure/issues/92#issuecomment-70869904","issue_url":"https://api.github.com/repos/CVNRneuroimaging/infrastructure/issues/92","id":70869904,"user":{"login":"stowler","id":436181,"avatar_url":"https://avatars.githubusercontent.com/u/436181?v=3","gravatar_id":"","url":"https://api.github.com/users/stowler","html_url":"https://github.com/stowler","followers_url":"https://api.github.com/users/stowler/followers","following_url":"https://api.github.com/users/stowler/following{/other_user}","gists_url":"https://api.github.com/users/stowler/gists{/gist_id}","starred_url":"https://api.github.com/users/stowler/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stowler/subscriptions","organizations_url":"https://api.github.com/users/stowler/orgs","repos_url":"https://api.github.com/users/stowler/repos","events_url":"https://api.github.com/users/stowler/events{/privacy}","received_events_url":"https://api.github.com/users/stowler/received_events","type":"User","site_admin":false},"created_at":"2015-01-21T16:32:12Z","updated_at":"2015-01-21T16:32:12Z","body":"Install of matlab R2014b on Yosemite 10.10.1 doesn't produce this problem. $DYLD_LIBRARY_PATH is no longer added to the environment. \r\n\r\nWe don't have any software requiring earlier versions of OS X or matlab, so I'm closing this issue."}}