{"action":"created","issue":{"url":"https://api.github.com/repos/neufeld/pandaseq/issues/49","labels_url":"https://api.github.com/repos/neufeld/pandaseq/issues/49/labels{/name}","comments_url":"https://api.github.com/repos/neufeld/pandaseq/issues/49/comments","events_url":"https://api.github.com/repos/neufeld/pandaseq/issues/49/events","html_url":"https://github.com/neufeld/pandaseq/issues/49","id":86688610,"number":49,"title":"STAT READS question","user":{"login":"fwhelan","id":3144468,"avatar_url":"https://avatars.githubusercontent.com/u/3144468?v=3","gravatar_id":"","url":"https://api.github.com/users/fwhelan","html_url":"https://github.com/fwhelan","followers_url":"https://api.github.com/users/fwhelan/followers","following_url":"https://api.github.com/users/fwhelan/following{/other_user}","gists_url":"https://api.github.com/users/fwhelan/gists{/gist_id}","starred_url":"https://api.github.com/users/fwhelan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fwhelan/subscriptions","organizations_url":"https://api.github.com/users/fwhelan/orgs","repos_url":"https://api.github.com/users/fwhelan/repos","events_url":"https://api.github.com/users/fwhelan/events{/privacy}","received_events_url":"https://api.github.com/users/fwhelan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":7,"created_at":"2015-06-09T18:22:15Z","updated_at":"2015-06-15T20:03:02Z","closed_at":null,"body":"Hi Andre,\r\n\r\nWhat is the code behind the ```STAT READS``` output? THE FAQs and man page suggest this is simply the number of input sequences, but are there any checks for matching sequence headers between R1 and R2 or anything else done before this number is calculated? I'm seeing a mismatch in a few of our files, but I suspect this is an issue on our side, so just looking for more information.\r\n\r\nThanks!\r\n--Fiona"},"comment":{"url":"https://api.github.com/repos/neufeld/pandaseq/issues/comments/112191088","html_url":"https://github.com/neufeld/pandaseq/issues/49#issuecomment-112191088","issue_url":"https://api.github.com/repos/neufeld/pandaseq/issues/49","id":112191088,"user":{"login":"fwhelan","id":3144468,"avatar_url":"https://avatars.githubusercontent.com/u/3144468?v=3","gravatar_id":"","url":"https://api.github.com/users/fwhelan","html_url":"https://github.com/fwhelan","followers_url":"https://api.github.com/users/fwhelan/followers","following_url":"https://api.github.com/users/fwhelan/following{/other_user}","gists_url":"https://api.github.com/users/fwhelan/gists{/gist_id}","starred_url":"https://api.github.com/users/fwhelan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fwhelan/subscriptions","organizations_url":"https://api.github.com/users/fwhelan/orgs","repos_url":"https://api.github.com/users/fwhelan/repos","events_url":"https://api.github.com/users/fwhelan/events{/privacy}","received_events_url":"https://api.github.com/users/fwhelan/received_events","type":"User","site_admin":false},"created_at":"2015-06-15T20:03:01Z","updated_at":"2015-06-15T20:03:01Z","body":"Thanks, Andre- we'll look into how the blank sequence is being generated.\r\n\r\nMaybe a warning? As a user, it would be helpful to know that there was a blank line since it isn't expected; however, I agree that those reads should be dropped."}}