{"action":"opened","issue":{"url":"https://api.github.com/repos/etal/cnvkit/issues/61","labels_url":"https://api.github.com/repos/etal/cnvkit/issues/61/labels{/name}","comments_url":"https://api.github.com/repos/etal/cnvkit/issues/61/comments","events_url":"https://api.github.com/repos/etal/cnvkit/issues/61/events","html_url":"https://github.com/etal/cnvkit/issues/61","id":120691739,"number":61,"title":"Add CODEX segmentation method","user":{"login":"etal","id":52723,"avatar_url":"https://avatars.githubusercontent.com/u/52723?v=3","gravatar_id":"","url":"https://api.github.com/users/etal","html_url":"https://github.com/etal","followers_url":"https://api.github.com/users/etal/followers","following_url":"https://api.github.com/users/etal/following{/other_user}","gists_url":"https://api.github.com/users/etal/gists{/gist_id}","starred_url":"https://api.github.com/users/etal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/etal/subscriptions","organizations_url":"https://api.github.com/users/etal/orgs","repos_url":"https://api.github.com/users/etal/repos","events_url":"https://api.github.com/users/etal/events{/privacy}","received_events_url":"https://api.github.com/users/etal/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-12-07T03:35:25Z","updated_at":"2015-12-07T03:35:25Z","closed_at":null,"body":"CODEX is a copy number developed specifically for detecting copy number from exome sequencing, and includes a segmentation method that explicitly models read depth (unlike the other segmentation methods currently available in CNVkit). See the [paper](http://nar.oxfordjournals.org/content/43/6/e39.long) and [Bioconductor package](https://www.bioconductor.org/packages/release/bioc/html/CODEX.html).\r\n\r\nJust wrap the R package."}}