{"action":"created","issue":{"url":"https://api.github.com/repos/philliplab/MotifBinner/issues/16","labels_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/16/labels{/name}","comments_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/16/comments","events_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/16/events","html_url":"https://github.com/philliplab/MotifBinner/issues/16","id":53737368,"number":16,"title":"Create test data for the mislabel detector","user":{"login":"philliplab","id":5589145,"avatar_url":"https://avatars.githubusercontent.com/u/5589145?v=3","gravatar_id":"","url":"https://api.github.com/users/philliplab","html_url":"https://github.com/philliplab","followers_url":"https://api.github.com/users/philliplab/followers","following_url":"https://api.github.com/users/philliplab/following{/other_user}","gists_url":"https://api.github.com/users/philliplab/gists{/gist_id}","starred_url":"https://api.github.com/users/philliplab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/philliplab/subscriptions","organizations_url":"https://api.github.com/users/philliplab/orgs","repos_url":"https://api.github.com/users/philliplab/repos","events_url":"https://api.github.com/users/philliplab/events{/privacy}","received_events_url":"https://api.github.com/users/philliplab/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/philliplab/MotifBinner/labels/2+-+Doing","name":"2 - Doing","color":"009800"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-01-08T10:47:59Z","updated_at":"2015-01-12T09:04:21Z","closed_at":null,"body":"We need to create a whole bunch of test bins that we can use to check how well the classifiers are performing.\r\n\r\nI am opting for just hard coding the test data into the package.\r\n\r\nFirst example:\r\n'test1' = list('src' = DNAStringSet(c('AAAAAAAAAAAAAAAAAAAAAAAAAAAAA',\r\n                                               'AAAAAAAAAAAAAAAAAAAAAAAAAAAAA')),\r\n                           'out' = DNAStringSet('CCCCCCCCCCCCCCCCCCCCCCCCCCCCC')\r\n                           )\r\n\r\n@ColinAnthony  @MurrayLogan \r\nWhat I will need is more example data. How do you think we should go about getting test data?\r\n\r\nShould I give you a couple of bins and then you classify them by hand?\r\n\r\nWhat I have in mind is to give you a bunch of FASTA files, each file containing a single bin.\r\n\r\nI will set the headers to 'seqx' (see below) for each sequence and I will sort the FASTA files so that identical sequences occur below each other. Then you need to set sequence name to 'out' for each sequence you think should not belong to the bin?\r\n\r\nx will range from 1 to the number of unique sequences in the bin. So the sequences will be for example:\r\nseq1, seq1, seq1, seq1, seq2, seq3, seq4, seq5, seq5, ....\r\n\r\nDo you think this will work? Alternative ideas for producing test data? Please note that we should be able to put this data on the internet, so no confidential data. But I think that putting just a few of Colin's bins on the internet will not do too much damage?"},"comment":{"url":"https://api.github.com/repos/philliplab/MotifBinner/issues/comments/69542867","html_url":"https://github.com/philliplab/MotifBinner/issues/16#issuecomment-69542867","issue_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/16","id":69542867,"user":{"login":"philliplab","id":5589145,"avatar_url":"https://avatars.githubusercontent.com/u/5589145?v=3","gravatar_id":"","url":"https://api.github.com/users/philliplab","html_url":"https://github.com/philliplab","followers_url":"https://api.github.com/users/philliplab/followers","following_url":"https://api.github.com/users/philliplab/following{/other_user}","gists_url":"https://api.github.com/users/philliplab/gists{/gist_id}","starred_url":"https://api.github.com/users/philliplab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/philliplab/subscriptions","organizations_url":"https://api.github.com/users/philliplab/orgs","repos_url":"https://api.github.com/users/philliplab/repos","events_url":"https://api.github.com/users/philliplab/events{/privacy}","received_events_url":"https://api.github.com/users/philliplab/received_events","type":"User","site_admin":false},"created_at":"2015-01-12T09:04:21Z","updated_at":"2015-01-12T09:04:21Z","body":"It would be for testing purposes only - It is very inconvenient to have to distribute test data separately from the package. An alternative would be to use data from the internet or simulating data."}}