{"action":"created","issue":{"url":"https://api.github.com/repos/road2stat/liftr/issues/12","labels_url":"https://api.github.com/repos/road2stat/liftr/issues/12/labels{/name}","comments_url":"https://api.github.com/repos/road2stat/liftr/issues/12/comments","events_url":"https://api.github.com/repos/road2stat/liftr/issues/12/events","html_url":"https://github.com/road2stat/liftr/issues/12","id":97750038,"number":12,"title":"only install pandoc if it is not already present","user":{"login":"dtenenba","id":2286826,"avatar_url":"https://avatars.githubusercontent.com/u/2286826?v=3","gravatar_id":"","url":"https://api.github.com/users/dtenenba","html_url":"https://github.com/dtenenba","followers_url":"https://api.github.com/users/dtenenba/followers","following_url":"https://api.github.com/users/dtenenba/following{/other_user}","gists_url":"https://api.github.com/users/dtenenba/gists{/gist_id}","starred_url":"https://api.github.com/users/dtenenba/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dtenenba/subscriptions","organizations_url":"https://api.github.com/users/dtenenba/orgs","repos_url":"https://api.github.com/users/dtenenba/repos","events_url":"https://api.github.com/users/dtenenba/events{/privacy}","received_events_url":"https://api.github.com/users/dtenenba/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-07-28T16:39:45Z","updated_at":"2015-07-31T16:32:47Z","closed_at":null,"body":"The Bioconductor Docker images are based on rocker/rstudio which means they already have pandoc installed. liftr tries to install pandoc on the container and this fails. The dockerfile should only attempt to install pandoc if it is not already installed. Thanks."},"comment":{"url":"https://api.github.com/repos/road2stat/liftr/issues/comments/126746035","html_url":"https://github.com/road2stat/liftr/issues/12#issuecomment-126746035","issue_url":"https://api.github.com/repos/road2stat/liftr/issues/12","id":126746035,"user":{"login":"road2stat","id":199363,"avatar_url":"https://avatars.githubusercontent.com/u/199363?v=3","gravatar_id":"","url":"https://api.github.com/users/road2stat","html_url":"https://github.com/road2stat","followers_url":"https://api.github.com/users/road2stat/followers","following_url":"https://api.github.com/users/road2stat/following{/other_user}","gists_url":"https://api.github.com/users/road2stat/gists{/gist_id}","starred_url":"https://api.github.com/users/road2stat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/road2stat/subscriptions","organizations_url":"https://api.github.com/users/road2stat/orgs","repos_url":"https://api.github.com/users/road2stat/repos","events_url":"https://api.github.com/users/road2stat/events{/privacy}","received_events_url":"https://api.github.com/users/road2stat/received_events","type":"User","site_admin":false},"created_at":"2015-07-31T16:32:47Z","updated_at":"2015-07-31T16:32:47Z","body":"@dtenenba - hi Dan, this issue has been fixed in the current version (v0.2) on GitHub. Try `devtools::install_github(\"road2stat/liftr\")` to install it. We've also submitted v0.2 to CRAN, waiting to be reviewed.\r\n\r\nIn v0.2, if `rocker/rstudio` and Bioconductor base images are specified, Pandoc will not be installed. We also provided a new option `pandoc` in the liftr metadata to allow users to control whether to install Pandoc or not."}}