{"action":"created","issue":{"url":"https://api.github.com/repos/samtools/htsjdk/issues/182","labels_url":"https://api.github.com/repos/samtools/htsjdk/issues/182/labels{/name}","comments_url":"https://api.github.com/repos/samtools/htsjdk/issues/182/comments","events_url":"https://api.github.com/repos/samtools/htsjdk/issues/182/events","html_url":"https://github.com/samtools/htsjdk/pull/182","id":58817421,"number":182,"title":"creating a Locatable interface","user":{"login":"lbergelson","id":4700332,"avatar_url":"https://avatars.githubusercontent.com/u/4700332?v=3","gravatar_id":"","url":"https://api.github.com/users/lbergelson","html_url":"https://github.com/lbergelson","followers_url":"https://api.github.com/users/lbergelson/followers","following_url":"https://api.github.com/users/lbergelson/following{/other_user}","gists_url":"https://api.github.com/users/lbergelson/gists{/gist_id}","starred_url":"https://api.github.com/users/lbergelson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbergelson/subscriptions","organizations_url":"https://api.github.com/users/lbergelson/orgs","repos_url":"https://api.github.com/users/lbergelson/repos","events_url":"https://api.github.com/users/lbergelson/events{/privacy}","received_events_url":"https://api.github.com/users/lbergelson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":20,"created_at":"2015-02-24T22:39:50Z","updated_at":"2015-03-06T21:24:37Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/samtools/htsjdk/pulls/182","html_url":"https://github.com/samtools/htsjdk/pull/182","diff_url":"https://github.com/samtools/htsjdk/pull/182.diff","patch_url":"https://github.com/samtools/htsjdk/pull/182.patch"},"body":"Renaming htsjdk.samtools.util.Interval -> NamedInterval which now extends the minimal Interval\r\nextracting out a minimal genomic interval class from and naming that Interval\r\nSAMRecord implements HasGenomicInterval\r\nFeature implements HasGenomicInterval\r\nrenaming classes that are based on NamedInterval\r\nrenaming htsjdk.tribble.index.interval.Interval to FileInterval\r\n\r\nThis is motivated by the need to have a common interface to work with tribble `Feature` and `SAMRecord` for location based caching purposes. \r\nIt's also a first step into integrating the the many interval classes that htsjdk, picard,  and GATK have and pushing functionality into a common base class.  See https://github.com/broadinstitute/hellbender/issues/100   and https://github.com/broadinstitute/hellbender/issues/159\r\n\r\n@droazen please review "},"comment":{"url":"https://api.github.com/repos/samtools/htsjdk/issues/comments/77638694","html_url":"https://github.com/samtools/htsjdk/pull/182#issuecomment-77638694","issue_url":"https://api.github.com/repos/samtools/htsjdk/issues/182","id":77638694,"user":{"login":"lbergelson","id":4700332,"avatar_url":"https://avatars.githubusercontent.com/u/4700332?v=3","gravatar_id":"","url":"https://api.github.com/users/lbergelson","html_url":"https://github.com/lbergelson","followers_url":"https://api.github.com/users/lbergelson/followers","following_url":"https://api.github.com/users/lbergelson/following{/other_user}","gists_url":"https://api.github.com/users/lbergelson/gists{/gist_id}","starred_url":"https://api.github.com/users/lbergelson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbergelson/subscriptions","organizations_url":"https://api.github.com/users/lbergelson/orgs","repos_url":"https://api.github.com/users/lbergelson/repos","events_url":"https://api.github.com/users/lbergelson/events{/privacy}","received_events_url":"https://api.github.com/users/lbergelson/received_events","type":"User","site_admin":false},"created_at":"2015-03-06T21:24:37Z","updated_at":"2015-03-06T21:24:37Z","body":"@nh13 could you take a look at this again? "}}