{"action":"created","issue":{"url":"https://api.github.com/repos/pmelsted/GFA-spec/issues/7","labels_url":"https://api.github.com/repos/pmelsted/GFA-spec/issues/7/labels{/name}","comments_url":"https://api.github.com/repos/pmelsted/GFA-spec/issues/7/comments","events_url":"https://api.github.com/repos/pmelsted/GFA-spec/issues/7/events","html_url":"https://github.com/pmelsted/GFA-spec/issues/7","id":98263318,"number":7,"title":"Pan-Genome Graphs","user":{"login":"ilyaminkin","id":1510845,"avatar_url":"https://avatars.githubusercontent.com/u/1510845?v=3","gravatar_id":"","url":"https://api.github.com/users/ilyaminkin","html_url":"https://github.com/ilyaminkin","followers_url":"https://api.github.com/users/ilyaminkin/followers","following_url":"https://api.github.com/users/ilyaminkin/following{/other_user}","gists_url":"https://api.github.com/users/ilyaminkin/gists{/gist_id}","starred_url":"https://api.github.com/users/ilyaminkin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ilyaminkin/subscriptions","organizations_url":"https://api.github.com/users/ilyaminkin/orgs","repos_url":"https://api.github.com/users/ilyaminkin/repos","events_url":"https://api.github.com/users/ilyaminkin/events{/privacy}","received_events_url":"https://api.github.com/users/ilyaminkin/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/pmelsted/GFA-spec/labels/question","name":"question","color":"cc317c"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-07-30T20:58:29Z","updated_at":"2015-08-03T19:27:53Z","closed_at":"2015-08-03T18:11:32Z","body":"There is some recent work on using of de Bruijn graphs on analysis of pan-genome, e.g. see:\r\n\r\n1. http://biorxiv.org/content/early/2014/04/06/003954\r\n2. http://link.springer.com/chapter/10.1007/978-3-319-19929-0_4\r\n3. http://link.springer.com/chapter/10.1007/978-3-642-40453-5_17#page-1\r\n\r\nSo far, there is no common format for such graphs. Does it make sense to generalize GFA to handle both pan-genome/assembly graphs?"},"comment":{"url":"https://api.github.com/repos/pmelsted/GFA-spec/issues/comments/127378398","html_url":"https://github.com/pmelsted/GFA-spec/issues/7#issuecomment-127378398","issue_url":"https://api.github.com/repos/pmelsted/GFA-spec/issues/7","id":127378398,"user":{"login":"ilyaminkin","id":1510845,"avatar_url":"https://avatars.githubusercontent.com/u/1510845?v=3","gravatar_id":"","url":"https://api.github.com/users/ilyaminkin","html_url":"https://github.com/ilyaminkin","followers_url":"https://api.github.com/users/ilyaminkin/followers","following_url":"https://api.github.com/users/ilyaminkin/following{/other_user}","gists_url":"https://api.github.com/users/ilyaminkin/gists{/gist_id}","starred_url":"https://api.github.com/users/ilyaminkin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ilyaminkin/subscriptions","organizations_url":"https://api.github.com/users/ilyaminkin/orgs","repos_url":"https://api.github.com/users/ilyaminkin/repos","events_url":"https://api.github.com/users/ilyaminkin/events{/privacy}","received_events_url":"https://api.github.com/users/ilyaminkin/received_events","type":"User","site_admin":false},"created_at":"2015-08-03T19:27:53Z","updated_at":"2015-08-03T19:27:53Z","body":"Oops, it seems that I have some misunderstanding. Are all tags supposed to be \"hardcoded\" in the specification, or it is possible for a user to introduce their own tags?"}}