{"action":"created","issue":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/22","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/22/labels{/name}","comments_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/22/comments","events_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/22/events","html_url":"https://github.com/monarch-initiative/dipper/issues/22","id":53563991,"number":22,"title":"extend provenance/dataset descriptions","user":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/monarch-initiative/dipper/labels/dataset","name":"dataset","color":"0052cc"},{"url":"https://api.github.com/repos/monarch-initiative/dipper/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"mbrush","id":5184212,"avatar_url":"https://avatars.githubusercontent.com/u/5184212?v=3","gravatar_id":"","url":"https://api.github.com/users/mbrush","html_url":"https://github.com/mbrush","followers_url":"https://api.github.com/users/mbrush/followers","following_url":"https://api.github.com/users/mbrush/following{/other_user}","gists_url":"https://api.github.com/users/mbrush/gists{/gist_id}","starred_url":"https://api.github.com/users/mbrush/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mbrush/subscriptions","organizations_url":"https://api.github.com/users/mbrush/orgs","repos_url":"https://api.github.com/users/mbrush/repos","events_url":"https://api.github.com/users/mbrush/events{/privacy}","received_events_url":"https://api.github.com/users/mbrush/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/monarch-initiative/dipper/milestones/3","html_url":"https://github.com/monarch-initiative/dipper/milestones/W3C-compliant%20provenance%20descriptions%20accompany%20dataset%20(Must)","labels_url":"https://api.github.com/repos/monarch-initiative/dipper/milestones/3/labels","id":924473,"number":3,"title":"W3C-compliant provenance descriptions accompany dataset (Must)","description":"We want to comply with the recommendations of the W3C and HCLS and be sure to track the relevant pieces of provenance information with the data that we use, create, and transform.  This milestone will encompass outlining the requirements as they apply to Monarch datasets, the relevant methods in Dipper, and their application (and validation) to any sources in Dipper by this date.  We will satisfy all MUST-level requirements for any of our data sources.","creator":{"login":"nlwashington","id":5124411,"avatar_url":"https://avatars.githubusercontent.com/u/5124411?v=3","gravatar_id":"","url":"https://api.github.com/users/nlwashington","html_url":"https://github.com/nlwashington","followers_url":"https://api.github.com/users/nlwashington/followers","following_url":"https://api.github.com/users/nlwashington/following{/other_user}","gists_url":"https://api.github.com/users/nlwashington/gists{/gist_id}","starred_url":"https://api.github.com/users/nlwashington/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nlwashington/subscriptions","organizations_url":"https://api.github.com/users/nlwashington/orgs","repos_url":"https://api.github.com/users/nlwashington/repos","events_url":"https://api.github.com/users/nlwashington/events{/privacy}","received_events_url":"https://api.github.com/users/nlwashington/received_events","type":"User","site_admin":false},"open_issues":3,"closed_issues":0,"state":"open","created_at":"2015-01-06T21:17:01Z","updated_at":"2015-05-30T06:24:13Z","due_on":"2015-04-15T07:00:00Z","closed_at":null},"comments":7,"created_at":"2015-01-06T21:13:45Z","updated_at":"2015-07-02T20:38:50Z","closed_at":null,"body":"Dipper currently has a very basic description created for each datasource, that produces something like:\r\n\r\n<:biogrid3.2.119> dct:isVersionOf <:biogrid> ;\r\n    pav:version \"3.2.119\" .\r\n\r\n<:biogrid> a dctypes:Dataset ;\r\n    dct:identifier \"biogrid\" ;\r\n    dct:issued \"2014-12-23\" ;\r\n    dct:title \"The BioGrid\" ;\r\n    dcat:accessURL <http://thebiogrid.org/downloads/archives/Latest%20Release/BIOGRID-ALL-LATEST.mitab.zip>,\r\n        <http://thebiogrid.org/downloads/archives/Latest%20Release/BIOGRID-ALL-LATEST.tab.zip> ;\r\n    foaf:page <http://thebiogrid.org/> .\r\n\r\nWe need to document and implement requirements for our system, as in this example:\r\nhttp://htmlpreview.github.io/?https://github.com/joejimbo/HCLSDatasetDescriptions/blob/master/Overview.html#appendix_1\r\n\r\nBioGrid is a good example of a resource that also aggregates information from other sources (for example, in addition to curating their own data, they also pull in interaction data from flybase).  For full tracking of that provenance chain, it would be good to mock up what the dataset description should look like here.  @mbrush after mocking that up, turn the ticket over to @kshefchek or @bryanlaraway to implement the relevant methods in Dataset.py, and in turn apply them to the various sources currently in Dipper."},"comment":{"url":"https://api.github.com/repos/monarch-initiative/dipper/issues/comments/118160903","html_url":"https://github.com/monarch-initiative/dipper/issues/22#issuecomment-118160903","issue_url":"https://api.github.com/repos/monarch-initiative/dipper/issues/22","id":118160903,"user":{"login":"ccondit","id":2066940,"avatar_url":"https://avatars.githubusercontent.com/u/2066940?v=3","gravatar_id":"","url":"https://api.github.com/users/ccondit","html_url":"https://github.com/ccondit","followers_url":"https://api.github.com/users/ccondit/followers","following_url":"https://api.github.com/users/ccondit/following{/other_user}","gists_url":"https://api.github.com/users/ccondit/gists{/gist_id}","starred_url":"https://api.github.com/users/ccondit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ccondit/subscriptions","organizations_url":"https://api.github.com/users/ccondit/orgs","repos_url":"https://api.github.com/users/ccondit/repos","events_url":"https://api.github.com/users/ccondit/events{/privacy}","received_events_url":"https://api.github.com/users/ccondit/received_events","type":"User","site_admin":false},"created_at":"2015-07-02T20:38:50Z","updated_at":"2015-07-02T20:38:50Z","body":"Related to SciGraph/SciGraph#106 - would be great to have ontology IRIs for dipper generated sources now that 'isDefinedBy' is used to link axioms back to the source ontology. Will generate a node based on the object hash code for now."}}