{"action":"closed","issue":{"url":"https://api.github.com/repos/acorg/dark-matter/issues/294","labels_url":"https://api.github.com/repos/acorg/dark-matter/issues/294/labels{/name}","comments_url":"https://api.github.com/repos/acorg/dark-matter/issues/294/comments","events_url":"https://api.github.com/repos/acorg/dark-matter/issues/294/events","html_url":"https://github.com/acorg/dark-matter/issues/294","id":57201766,"number":294,"title":"write-htcondor-job-spec.py accepts FASTQ files but should not","user":{"login":"terrycojones","id":132978,"avatar_url":"https://avatars.githubusercontent.com/u/132978?v=3","gravatar_id":"","url":"https://api.github.com/users/terrycojones","html_url":"https://github.com/terrycojones","followers_url":"https://api.github.com/users/terrycojones/followers","following_url":"https://api.github.com/users/terrycojones/following{/other_user}","gists_url":"https://api.github.com/users/terrycojones/gists{/gist_id}","starred_url":"https://api.github.com/users/terrycojones/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/terrycojones/subscriptions","organizations_url":"https://api.github.com/users/terrycojones/orgs","repos_url":"https://api.github.com/users/terrycojones/repos","events_url":"https://api.github.com/users/terrycojones/events{/privacy}","received_events_url":"https://api.github.com/users/terrycojones/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/acorg/dark-matter/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-02-10T16:52:28Z","updated_at":"2015-02-10T17:34:23Z","closed_at":"2015-02-10T17:34:23Z","body":"The `write-htcondor-job-spec.py` command accepts a FASTQ file as input and splits it as though it were FASTA. This shouldn't be possible as the resulting \"FASTA\" has quality strings as sequence ids. At least we should look at the file name and give a warning if it ends in `fastq`."}}