{"action":"created","issue":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/1729","labels_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/1729/labels{/name}","comments_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/1729/comments","events_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/1729/events","html_url":"https://github.com/openmicroscopy/bioformats/pull/1729","id":68068483,"number":1729,"title":"Documentation for manual upgrade of Bio-Formats in FIJI","user":{"login":"bramalingam","id":6438384,"avatar_url":"https://avatars.githubusercontent.com/u/6438384?v=3","gravatar_id":"","url":"https://api.github.com/users/bramalingam","html_url":"https://github.com/bramalingam","followers_url":"https://api.github.com/users/bramalingam/followers","following_url":"https://api.github.com/users/bramalingam/following{/other_user}","gists_url":"https://api.github.com/users/bramalingam/gists{/gist_id}","starred_url":"https://api.github.com/users/bramalingam/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bramalingam/subscriptions","organizations_url":"https://api.github.com/users/bramalingam/orgs","repos_url":"https://api.github.com/users/bramalingam/repos","events_url":"https://api.github.com/users/bramalingam/events{/privacy}","received_events_url":"https://api.github.com/users/bramalingam/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/openmicroscopy/bioformats/labels/develop","name":"develop","color":"02e10c"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":11,"created_at":"2015-04-13T10:58:02Z","updated_at":"2015-04-16T16:33:33Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/pulls/1729","html_url":"https://github.com/openmicroscopy/bioformats/pull/1729","diff_url":"https://github.com/openmicroscopy/bioformats/pull/1729.diff","patch_url":"https://github.com/openmicroscopy/bioformats/pull/1729.patch"},"body":"Testing Instructions : \r\nReplicate steps given in the documentation to check if the upgrade works."},"comment":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/comments/93779037","html_url":"https://github.com/openmicroscopy/bioformats/pull/1729#issuecomment-93779037","issue_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/1729","id":93779037,"user":{"login":"hinerm","id":1123809,"avatar_url":"https://avatars.githubusercontent.com/u/1123809?v=3","gravatar_id":"","url":"https://api.github.com/users/hinerm","html_url":"https://github.com/hinerm","followers_url":"https://api.github.com/users/hinerm/followers","following_url":"https://api.github.com/users/hinerm/following{/other_user}","gists_url":"https://api.github.com/users/hinerm/gists{/gist_id}","starred_url":"https://api.github.com/users/hinerm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hinerm/subscriptions","organizations_url":"https://api.github.com/users/hinerm/orgs","repos_url":"https://api.github.com/users/hinerm/repos","events_url":"https://api.github.com/users/hinerm/events{/privacy}","received_events_url":"https://api.github.com/users/hinerm/received_events","type":"User","site_admin":false},"created_at":"2015-04-16T16:33:33Z","updated_at":"2015-04-16T16:33:33Z","body":"@melissalinkert Those reasons for keeping manual instructions sound good to me.\r\n\r\nWhat originally caught my attention was that the instructions, as-is, say: update Fiji, then delete versions `5.0.7`, then download `\"our latest stable release\"` - but the act of udpating Fiji will now give you `5.1.0` jars which invalidate the subsequent steps.\r\n\r\nPerhaps steps `4` and `5` should be generalized to instructions on deleting any bio-formats jars from `/jars`, `/jars/bio-formats` and `/plugins`? This might be more future proof, and would then cover some of the scenarios you mentioned."}}