{"action":"created","issue":{"url":"https://api.github.com/repos/ahasfura/parallel_preseq/issues/1","labels_url":"https://api.github.com/repos/ahasfura/parallel_preseq/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/ahasfura/parallel_preseq/issues/1/comments","events_url":"https://api.github.com/repos/ahasfura/parallel_preseq/issues/1/events","html_url":"https://github.com/ahasfura/parallel_preseq/issues/1","id":118471428,"number":1,"title":"Index file calculation","user":{"login":"mukarramtahir","id":6775312,"avatar_url":"https://avatars.githubusercontent.com/u/6775312?v=3","gravatar_id":"","url":"https://api.github.com/users/mukarramtahir","html_url":"https://github.com/mukarramtahir","followers_url":"https://api.github.com/users/mukarramtahir/followers","following_url":"https://api.github.com/users/mukarramtahir/following{/other_user}","gists_url":"https://api.github.com/users/mukarramtahir/gists{/gist_id}","starred_url":"https://api.github.com/users/mukarramtahir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mukarramtahir/subscriptions","organizations_url":"https://api.github.com/users/mukarramtahir/orgs","repos_url":"https://api.github.com/users/mukarramtahir/repos","events_url":"https://api.github.com/users/mukarramtahir/events{/privacy}","received_events_url":"https://api.github.com/users/mukarramtahir/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-11-23T21:02:28Z","updated_at":"2015-11-28T02:28:11Z","closed_at":null,"body":"Is it feasible (considering the time to compute the index and the filesize of the resulting index) to pre-compute index files for all the BAM files we will be processing? \r\n\r\nIndex file is calculated using: \r\n\r\n```\r\nsamtools index filename.bam\r\n```"},"comment":{"url":"https://api.github.com/repos/ahasfura/parallel_preseq/issues/comments/160241733","html_url":"https://github.com/ahasfura/parallel_preseq/issues/1#issuecomment-160241733","issue_url":"https://api.github.com/repos/ahasfura/parallel_preseq/issues/1","id":160241733,"user":{"login":"lhogstrom","id":3091474,"avatar_url":"https://avatars.githubusercontent.com/u/3091474?v=3","gravatar_id":"","url":"https://api.github.com/users/lhogstrom","html_url":"https://github.com/lhogstrom","followers_url":"https://api.github.com/users/lhogstrom/followers","following_url":"https://api.github.com/users/lhogstrom/following{/other_user}","gists_url":"https://api.github.com/users/lhogstrom/gists{/gist_id}","starred_url":"https://api.github.com/users/lhogstrom/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lhogstrom/subscriptions","organizations_url":"https://api.github.com/users/lhogstrom/orgs","repos_url":"https://api.github.com/users/lhogstrom/repos","events_url":"https://api.github.com/users/lhogstrom/events{/privacy}","received_events_url":"https://api.github.com/users/lhogstrom/received_events","type":"User","site_admin":false},"created_at":"2015-11-28T02:28:11Z","updated_at":"2015-11-28T02:28:11Z","body":"I tried to make a few index files for various BAMs on the Broad server. I'm running into this problem:\r\n![image](https://cloud.githubusercontent.com/assets/3091474/11449701/b7390b8a-954d-11e5-8612-c7458a1c74dd.png)\r\n\r\nIt might be a samtools version issue. I'll look into it further. "}}