{"action":"created","issue":{"url":"https://api.github.com/repos/SciGraph/SciGraph/issues/150","labels_url":"https://api.github.com/repos/SciGraph/SciGraph/issues/150/labels{/name}","comments_url":"https://api.github.com/repos/SciGraph/SciGraph/issues/150/comments","events_url":"https://api.github.com/repos/SciGraph/SciGraph/issues/150/events","html_url":"https://github.com/SciGraph/SciGraph/issues/150","id":99304043,"number":150,"title":"reasoner issues","user":{"login":"tgbugs","id":4299776,"avatar_url":"https://avatars.githubusercontent.com/u/4299776?v=3","gravatar_id":"","url":"https://api.github.com/users/tgbugs","html_url":"https://github.com/tgbugs","followers_url":"https://api.github.com/users/tgbugs/followers","following_url":"https://api.github.com/users/tgbugs/following{/other_user}","gists_url":"https://api.github.com/users/tgbugs/gists{/gist_id}","starred_url":"https://api.github.com/users/tgbugs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tgbugs/subscriptions","organizations_url":"https://api.github.com/users/tgbugs/orgs","repos_url":"https://api.github.com/users/tgbugs/repos","events_url":"https://api.github.com/users/tgbugs/events{/privacy}","received_events_url":"https://api.github.com/users/tgbugs/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":7,"created_at":"2015-08-05T21:35:20Z","updated_at":"2015-08-06T06:08:14Z","closed_at":null,"body":"When the UBERON partonomy is ingested into scigraph the reasoner appears to make some rather.... amusing inferences: http://kaa.neuinfo.org:9000/scigraph/graph/neighbors/UBERON_0002129?relationshipType=BFO_0000050&direction=INCOMING&depth=1\r\nFor example asserting that the 'upper urinary tract' is 'part_of' 'cerebellar cortex.'\r\nThis makes it quite hard to use the uberon partonomy from scigraph.\r\nI have only loaded uberon.owl on that instance of scigraph.\r\n\r\n@cmungall is this a known issue?"},"comment":{"url":"https://api.github.com/repos/SciGraph/SciGraph/issues/comments/128261624","html_url":"https://github.com/SciGraph/SciGraph/issues/150#issuecomment-128261624","issue_url":"https://api.github.com/repos/SciGraph/SciGraph/issues/150","id":128261624,"user":{"login":"tgbugs","id":4299776,"avatar_url":"https://avatars.githubusercontent.com/u/4299776?v=3","gravatar_id":"","url":"https://api.github.com/users/tgbugs","html_url":"https://github.com/tgbugs","followers_url":"https://api.github.com/users/tgbugs/followers","following_url":"https://api.github.com/users/tgbugs/following{/other_user}","gists_url":"https://api.github.com/users/tgbugs/gists{/gist_id}","starred_url":"https://api.github.com/users/tgbugs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tgbugs/subscriptions","organizations_url":"https://api.github.com/users/tgbugs/orgs","repos_url":"https://api.github.com/users/tgbugs/repos","events_url":"https://api.github.com/users/tgbugs/events{/privacy}","received_events_url":"https://api.github.com/users/tgbugs/received_events","type":"User","site_admin":false},"created_at":"2015-08-06T06:08:14Z","updated_at":"2015-08-06T06:08:14Z","body":"http://purl.obolibrary.org/obo/uberon/basic.obo loads fine and the problem does not appear: http://kaa.neuinfo.org:3000/scigraph/graph/neighbors/UBERON_0002129?relationshipType=BFO_0000050&direction=INCOMING&depth=1.\r\n\r\nThis was loaded using the same build of scigraph with the same config files, changing only what ontology file was loaded."}}