{"action":"created","issue":{"url":"https://api.github.com/repos/ropensci/git2r/issues/155","labels_url":"https://api.github.com/repos/ropensci/git2r/issues/155/labels{/name}","comments_url":"https://api.github.com/repos/ropensci/git2r/issues/155/comments","events_url":"https://api.github.com/repos/ropensci/git2r/issues/155/events","html_url":"https://github.com/ropensci/git2r/issues/155","id":96309237,"number":155,"title":"unable to load shared object git2r.so","user":{"login":"slowkow","id":209714,"avatar_url":"https://avatars.githubusercontent.com/u/209714?v=3","gravatar_id":"","url":"https://api.github.com/users/slowkow","html_url":"https://github.com/slowkow","followers_url":"https://api.github.com/users/slowkow/followers","following_url":"https://api.github.com/users/slowkow/following{/other_user}","gists_url":"https://api.github.com/users/slowkow/gists{/gist_id}","starred_url":"https://api.github.com/users/slowkow/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/slowkow/subscriptions","organizations_url":"https://api.github.com/users/slowkow/orgs","repos_url":"https://api.github.com/users/slowkow/repos","events_url":"https://api.github.com/users/slowkow/events{/privacy}","received_events_url":"https://api.github.com/users/slowkow/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-07-21T12:58:23Z","updated_at":"2015-07-26T10:23:26Z","closed_at":"2015-07-26T10:23:26Z","body":"`git2r` fails to install on my system. Could you provide any hints?\r\n\r\nThe error:\r\n\r\n```\r\n** testing if installed package can be loaded\r\nError in dyn.load(file, DLLpath = DLLpath, ...) :\r\n  unable to load shared object '/PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1/git2r/libs/git2r.so':\r\n  /PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1/git2r/libs/git2r.so: undefined symbol: regerrorA\r\nError: loading failed\r\nExecution halted\r\n```\r\n\r\nThe full build log:\r\n\r\n```\r\nR\r\n\r\nR version 3.1.0 (2014-04-10) -- \"Spring Dance\"\r\nCopyright (C) 2014 The R Foundation for Statistical Computing\r\nPlatform: x86_64-unknown-linux-gnu (64-bit)\r\n\r\nR is free software and comes with ABSOLUTELY NO WARRANTY.\r\nYou are welcome to redistribute it under certain conditions.\r\nType 'license()' or 'licence()' for distribution details.\r\n\r\n  Natural language support but running in an English locale\r\n\r\nR is a collaborative project with many contributors.\r\nType 'contributors()' for more information and\r\n'citation()' on how to cite R or R packages in publications.\r\n\r\nType 'demo()' for some demos, 'help()' for on-line help, or\r\n'help.start()' for an HTML browser interface to help.\r\nType 'q()' to quit R.\r\n\r\n> install.packages('git2r')\r\nInstalling package into ‘/PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1’\r\n(as ‘lib’ is unspecified)\r\ntrying URL 'http://cran.rstudio.com/src/contrib/git2r_0.10.1.tar.gz'\r\nContent type 'application/x-gzip' length 1014817 bytes (991 Kb)\r\nopened URL\r\n==================================================\r\ndownloaded 991 Kb\r\n\r\n* installing *source* package ‘git2r’ ...\r\n** package ‘git2r’ successfully unpacked and MD5 sums checked\r\nchecking build system type... x86_64-unknown-linux-gnu\r\nchecking host system type... x86_64-unknown-linux-gnu\r\nchecking for gcc... gcc\r\nchecking whether the C compiler works... yes\r\nchecking for C compiler default output file name... a.out\r\nchecking for suffix of executables...\r\nchecking whether we are cross compiling... no\r\nchecking for suffix of object files... o\r\nchecking whether we are using the GNU C compiler... yes\r\nchecking whether gcc accepts -g... yes\r\nchecking for gcc option to accept ISO C89... none needed\r\nchecking for library containing inflate... -lz\r\nchecking for library containing SSL_library_init... -lssl\r\nchecking for library containing EVP_EncryptInit... none required\r\nchecking for library containing libssh2_version... no\r\nconfigure: WARNING:\r\n  ---------------------------------------------\r\n   Unable to find LibSSH2 on this system.\r\n   Building a version without support for SSH.\r\n  ---------------------------------------------\r\nchecking how to run the C preprocessor... gcc -std=gnu99 -E\r\nchecking for grep that handles long lines and -e... /bin/grep\r\nchecking for egrep... /bin/grep -E\r\nchecking for ANSI C header files... yes\r\nchecking for sys/types.h... yes\r\nchecking for sys/stat.h... yes\r\nchecking for stdlib.h... yes\r\nchecking for string.h... yes\r\nchecking for memory.h... yes\r\nchecking for strings.h... yes\r\nchecking for inttypes.h... yes\r\nchecking for stdint.h... yes\r\nchecking for unistd.h... yes\r\nchecking size of void*... 8\r\nchecking for size_t... yes\r\nchecking for working alloca.h... yes\r\nchecking for alloca... yes\r\nchecking arpa/inet.h usability... yes\r\nchecking arpa/inet.h presence... yes\r\nchecking for arpa/inet.h... yes\r\nchecking fcntl.h usability... yes\r\nchecking fcntl.h presence... yes\r\nchecking for fcntl.h... yes\r\nchecking for inttypes.h... (cached) yes\r\nchecking langinfo.h usability... yes\r\nchecking langinfo.h presence... yes\r\nchecking for langinfo.h... yes\r\nchecking libintl.h usability... yes\r\nchecking libintl.h presence... yes\r\nchecking for libintl.h... yes\r\nchecking limits.h usability... yes\r\nchecking limits.h presence... yes\r\nchecking for limits.h... yes\r\nchecking locale.h usability... yes\r\nchecking locale.h presence... yes\r\nchecking for locale.h... yes\r\nchecking malloc.h usability... yes\r\nchecking malloc.h presence... yes\r\nchecking for malloc.h... yes\r\nchecking netdb.h usability... yes\r\nchecking netdb.h presence... yes\r\nchecking for netdb.h... yes\r\nchecking netinet/in.h usability... yes\r\nchecking netinet/in.h presence... yes\r\nchecking for netinet/in.h... yes\r\nchecking stddef.h usability... yes\r\nchecking stddef.h presence... yes\r\nchecking for stddef.h... yes\r\nchecking for stdint.h... (cached) yes\r\nchecking for stdlib.h... (cached) yes\r\nchecking for string.h... (cached) yes\r\nchecking sys/param.h usability... yes\r\nchecking sys/param.h presence... yes\r\nchecking for sys/param.h... yes\r\nchecking sys/socket.h usability... yes\r\nchecking sys/socket.h presence... yes\r\nchecking for sys/socket.h... yes\r\nchecking sys/time.h usability... yes\r\nchecking sys/time.h presence... yes\r\nchecking for sys/time.h... yes\r\nchecking for unistd.h... (cached) yes\r\nchecking wchar.h usability... yes\r\nchecking wchar.h presence... yes\r\nchecking for wchar.h... yes\r\nchecking wctype.h usability... yes\r\nchecking wctype.h presence... yes\r\nchecking for wctype.h... yes\r\nchecking for stdbool.h that conforms to C99... yes\r\nchecking for _Bool... yes\r\nchecking for inline... inline\r\nchecking for int16_t... yes\r\nchecking for int32_t... yes\r\nchecking for int64_t... yes\r\nchecking for int8_t... yes\r\nchecking for mode_t... yes\r\nchecking for C/C++ restrict keyword... __restrict\r\nchecking for size_t... (cached) yes\r\nchecking for ssize_t... yes\r\nchecking for struct stat.st_rdev... yes\r\nchecking for uint16_t... yes\r\nchecking for uint32_t... yes\r\nchecking for uint64_t... yes\r\nchecking for uint8_t... yes\r\nchecking for error_at_line... yes\r\nchecking for stdlib.h... (cached) yes\r\nchecking for GNU libc compatible malloc... yes\r\nchecking whether time.h and sys/time.h may both be included... yes\r\nchecking for sys/time.h... (cached) yes\r\nchecking for unistd.h... (cached) yes\r\nchecking for stdlib.h... (cached) yes\r\nchecking for sys/param.h... (cached) yes\r\nchecking for alarm... yes\r\nchecking for working mktime... yes\r\nchecking for getpagesize... yes\r\nchecking for working mmap... yes\r\nchecking for stdlib.h... (cached) yes\r\nchecking for GNU libc compatible realloc... yes\r\nchecking for btowc... yes\r\nchecking for clock_gettime... no\r\nchecking for getcwd... yes\r\nchecking for gethostbyname... yes\r\nchecking for gettimeofday... yes\r\nchecking for isascii... yes\r\nchecking for memchr... yes\r\nchecking for memmove... yes\r\nchecking for memset... yes\r\nchecking for munmap... yes\r\nchecking for pstat_getdynamic... no\r\nchecking for re_comp... yes\r\nchecking for realpath... yes\r\nchecking for regcomp... yes\r\nchecking for select... yes\r\nchecking for socket... yes\r\nchecking for strcasecmp... yes\r\nchecking for strchr... yes\r\nchecking for strcspn... yes\r\nchecking for strdup... yes\r\nchecking for strerror... yes\r\nchecking for strncasecmp... yes\r\nchecking for strrchr... yes\r\nchecking for strspn... yes\r\nchecking for strstr... yes\r\nchecking for strtol... yes\r\nchecking for strtoul... yes\r\nconfigure: creating ./config.status\r\nconfig.status: creating src/Makevars\r\n** libs\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/annotated_commit.c -o libgit2/annotated_commit.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/attr.c -o libgit2/attr.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/attrcache.c -o libgit2/attrcache.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/attr_file.c -o libgit2/attr_file.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/blame.c -o libgit2/blame.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/blame_git.c -o libgit2/blame_git.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/blob.c -o libgit2/blob.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/branch.c -o libgit2/branch.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/buffer.c -o libgit2/buffer.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/buf_text.c -o libgit2/buf_text.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/cache.c -o libgit2/cache.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/checkout.c -o libgit2/checkout.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/cherrypick.c -o libgit2/cherrypick.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/clone.c -o libgit2/clone.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/commit.c -o libgit2/commit.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/commit_list.c -o libgit2/commit_list.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/config.c -o libgit2/config.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/config_cache.c -o libgit2/config_cache.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/config_file.c -o libgit2/config_file.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/crlf.c -o libgit2/crlf.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/date.c -o libgit2/date.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/delta-apply.c -o libgit2/delta-apply.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/delta.c -o libgit2/delta.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/describe.c -o libgit2/describe.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff.c -o libgit2/diff.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_driver.c -o libgit2/diff_driver.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_file.c -o libgit2/diff_file.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_patch.c -o libgit2/diff_patch.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_print.c -o libgit2/diff_print.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_stats.c -o libgit2/diff_stats.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_tform.c -o libgit2/diff_tform.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/diff_xdiff.c -o libgit2/diff_xdiff.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/errors.c -o libgit2/errors.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/fetch.c -o libgit2/fetch.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/fetchhead.c -o libgit2/fetchhead.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/filebuf.c -o libgit2/filebuf.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/fileops.c -o libgit2/fileops.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/filter.c -o libgit2/filter.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/fnmatch.c -o libgit2/fnmatch.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/global.c -o libgit2/global.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/graph.c -o libgit2/graph.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/hash.c -o libgit2/hash.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/hashsig.c -o libgit2/hashsig.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/ident.c -o libgit2/ident.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/ignore.c -o libgit2/ignore.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/index.c -o libgit2/index.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/indexer.c -o libgit2/indexer.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/iterator.c -o libgit2/iterator.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/merge.c -o libgit2/merge.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/merge_file.c -o libgit2/merge_file.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/message.c -o libgit2/message.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/mwindow.c -o libgit2/mwindow.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/netops.c -o libgit2/netops.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/notes.c -o libgit2/notes.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/object_api.c -o libgit2/object_api.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/object.c -o libgit2/object.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/odb.c -o libgit2/odb.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/odb_loose.c -o libgit2/odb_loose.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/odb_mempack.c -o libgit2/odb_mempack.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/odb_pack.c -o libgit2/odb_pack.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/oidarray.c -o libgit2/oidarray.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/oid.c -o libgit2/oid.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/openssl_stream.c -o libgit2/openssl_stream.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/pack.c -o libgit2/pack.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/pack-objects.c -o libgit2/pack-objects.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/path.c -o libgit2/path.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/pathspec.c -o libgit2/pathspec.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/pool.c -o libgit2/pool.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/posix.c -o libgit2/posix.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/pqueue.c -o libgit2/pqueue.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/push.c -o libgit2/push.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/rebase.c -o libgit2/rebase.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/refdb.c -o libgit2/refdb.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/refdb_fs.c -o libgit2/refdb_fs.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/reflog.c -o libgit2/reflog.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/refs.c -o libgit2/refs.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/refspec.c -o libgit2/refspec.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/remote.c -o libgit2/remote.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/repository.c -o libgit2/repository.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/reset.c -o libgit2/reset.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/revert.c -o libgit2/revert.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/revparse.c -o libgit2/revparse.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/revwalk.c -o libgit2/revwalk.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/settings.c -o libgit2/settings.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/sha1_lookup.c -o libgit2/sha1_lookup.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/signature.c -o libgit2/signature.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/socket_stream.c -o libgit2/socket_stream.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/sortedcache.c -o libgit2/sortedcache.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/stash.c -o libgit2/stash.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/status.c -o libgit2/status.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/strmap.c -o libgit2/strmap.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/submodule.c -o libgit2/submodule.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/sysdir.c -o libgit2/sysdir.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/tag.c -o libgit2/tag.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/thread-utils.c -o libgit2/thread-utils.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/trace.c -o libgit2/trace.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transaction.c -o libgit2/transaction.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transport.c -o libgit2/transport.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/tree.c -o libgit2/tree.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/tree-cache.c -o libgit2/tree-cache.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/tsort.c -o libgit2/tsort.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/util.c -o libgit2/util.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/vector.c -o libgit2/vector.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/zstream.c -o libgit2/zstream.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/auth.c -o libgit2/transports/auth.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/cred.c -o libgit2/transports/cred.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/cred_helpers.c -o libgit2/transports/cred_helpers.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/git.c -o libgit2/transports/git.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/http.c -o libgit2/transports/http.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/local.c -o libgit2/transports/local.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/smart.c -o libgit2/transports/smart.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/smart_pkt.c -o libgit2/transports/smart_pkt.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/smart_protocol.c -o libgit2/transports/smart_protocol.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/transports/ssh.c -o libgit2/transports/ssh.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/unix/map.c -o libgit2/unix/map.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/unix/realpath.c -o libgit2/unix/realpath.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xdiffi.c -o libgit2/xdiff/xdiffi.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xemit.c -o libgit2/xdiff/xemit.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xhistogram.c -o libgit2/xdiff/xhistogram.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xmerge.c -o libgit2/xdiff/xmerge.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xpatience.c -o libgit2/xdiff/xpatience.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xprepare.c -o libgit2/xdiff/xprepare.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c libgit2/xdiff/xutils.c -o libgit2/xdiff/xutils.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c http-parser/http_parser.c -o http-parser/http_parser.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_arg.c -o git2r_arg.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_blame.c -o git2r_blame.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_blob.c -o git2r_blob.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_branch.c -o git2r_branch.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r.c -o git2r.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_checkout.c -o git2r_checkout.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_clone.c -o git2r_clone.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_commit.c -o git2r_commit.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_config.c -o git2r_config.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_cred.c -o git2r_cred.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_diff.c -o git2r_diff.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_error.c -o git2r_error.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_graph.c -o git2r_graph.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_index.c -o git2r_index.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_libgit2.c -o git2r_libgit2.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_merge.c -o git2r_merge.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_note.c -o git2r_note.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_object.c -o git2r_object.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_odb.c -o git2r_odb.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_oid.c -o git2r_oid.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_push.c -o git2r_push.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_reference.c -o git2r_reference.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_reflog.c -o git2r_reflog.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_remote.c -o git2r_remote.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_repository.c -o git2r_repository.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_reset.c -o git2r_reset.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_revparse.c -o git2r_revparse.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_revwalk.c -o git2r_revwalk.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_signature.c -o git2r_signature.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_stash.c -o git2r_stash.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_status.c -o git2r_status.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_tag.c -o git2r_tag.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_transfer.c -o git2r_transfer.o\r\ngcc -std=gnu99 -I/source/R/3.1.0/lib64/R/include -DNDEBUG -I/usr/local/include -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -I. -Ilibgit2 -Ilibgit2/include -Ihttp-parser -DGIT_SSL -DOPENSSL_SHA1 -DGIT_ARCH_64 -I/usr/local/include    -fpic\r\n -g -O2  -c git2r_tree.c -o git2r_tree.o\r\ngcc -std=gnu99 -shared -L/usr/local/lib64 -o git2r.so libgit2/annotated_commit.o libgit2/attr.o libgit2/attrcache.o libgit2/attr_file.o libgit2/blame.o libgit2/blame_git.o libgit2/blob.o libgit2/branch.o libgit2/buffer.o libgit2/bu\r\nf_text.o libgit2/cache.o libgit2/checkout.o libgit2/cherrypick.o libgit2/clone.o libgit2/commit.o libgit2/commit_list.o libgit2/config.o libgit2/config_cache.o libgit2/config_file.o libgit2/crlf.o libgit2/date.o libgit2/delta-apply\r\n.o libgit2/delta.o libgit2/describe.o libgit2/diff.o libgit2/diff_driver.o libgit2/diff_file.o libgit2/diff_patch.o libgit2/diff_print.o libgit2/diff_stats.o libgit2/diff_tform.o libgit2/diff_xdiff.o libgit2/errors.o libgit2/fetch.\r\no libgit2/fetchhead.o libgit2/filebuf.o libgit2/fileops.o libgit2/filter.o libgit2/fnmatch.o libgit2/global.o libgit2/graph.o libgit2/hash.o libgit2/hashsig.o libgit2/ident.o libgit2/ignore.o libgit2/index.o libgit2/indexer.o libgi\r\nt2/iterator.o libgit2/merge.o libgit2/merge_file.o libgit2/message.o libgit2/mwindow.o libgit2/netops.o libgit2/notes.o libgit2/object_api.o libgit2/object.o libgit2/odb.o libgit2/odb_loose.o libgit2/odb_mempack.o libgit2/odb_pack.\r\no libgit2/oidarray.o libgit2/oid.o libgit2/openssl_stream.o libgit2/pack.o libgit2/pack-objects.o libgit2/path.o libgit2/pathspec.o libgit2/pool.o libgit2/posix.o libgit2/pqueue.o libgit2/push.o libgit2/rebase.o libgit2/refdb.o lib\r\ngit2/refdb_fs.o libgit2/reflog.o libgit2/refs.o libgit2/refspec.o libgit2/remote.o libgit2/repository.o libgit2/reset.o libgit2/revert.o libgit2/revparse.o libgit2/revwalk.o libgit2/settings.o libgit2/sha1_lookup.o libgit2/signatur\r\ne.o libgit2/socket_stream.o libgit2/sortedcache.o libgit2/stash.o libgit2/status.o libgit2/strmap.o libgit2/submodule.o libgit2/sysdir.o libgit2/tag.o libgit2/thread-utils.o libgit2/trace.o libgit2/transaction.o libgit2/transport.o\r\n libgit2/tree.o libgit2/tree-cache.o libgit2/tsort.o libgit2/util.o libgit2/vector.o libgit2/zstream.o libgit2/transports/auth.o libgit2/transports/cred.o libgit2/transports/cred_helpers.o libgit2/transports/git.o libgit2/transport\r\ns/http.o libgit2/transports/local.o libgit2/transports/smart.o libgit2/transports/smart_pkt.o libgit2/transports/smart_protocol.o libgit2/transports/ssh.o libgit2/unix/map.o libgit2/unix/realpath.o libgit2/xdiff/xdiffi.o libgit2/xd\r\niff/xemit.o libgit2/xdiff/xhistogram.o libgit2/xdiff/xmerge.o libgit2/xdiff/xpatience.o libgit2/xdiff/xprepare.o libgit2/xdiff/xutils.o http-parser/http_parser.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r.o git2r_c\r\nheckout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_referenc\r\ne.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lssl -lz -L/source/R/3.1.0/lib64/R/lib -l\r\nR\r\ninstalling to /PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1/git2r/libs\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\nCreating a generic function for ‘summary’ from package ‘base’ in package ‘git2r’\r\nCreating a generic function for ‘diff’ from package ‘base’ in package ‘git2r’\r\nCreating a generic function for ‘merge’ from package ‘base’ in package ‘git2r’\r\nCreating a generic function for ‘plot’ from package ‘graphics’ in package ‘git2r’\r\nCreating a generic function for ‘head’ from package ‘utils’ in package ‘git2r’\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded\r\nError in dyn.load(file, DLLpath = DLLpath, ...) :\r\n  unable to load shared object '/PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1/git2r/libs/git2r.so':\r\n  /PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1/git2r/libs/git2r.so: undefined symbol: regerrorA\r\nError: loading failed\r\nExecution halted\r\nERROR: loading failed\r\n* removing ‘/PHShome/ks38/.local/lib/R/x86_64-linux-gnu-library/3.1/git2r’\r\n\r\nThe downloaded source packages are in\r\n        ‘/tmp/Rtmp1gjemg/downloaded_packages’\r\nWarning message:\r\nIn install.packages(\"git2r\") :\r\n  installation of package ‘git2r’ had non-zero exit status\r\n>\r\n```"},"comment":{"url":"https://api.github.com/repos/ropensci/git2r/issues/comments/124967248","html_url":"https://github.com/ropensci/git2r/issues/155#issuecomment-124967248","issue_url":"https://api.github.com/repos/ropensci/git2r/issues/155","id":124967248,"user":{"login":"stewid","id":1815965,"avatar_url":"https://avatars.githubusercontent.com/u/1815965?v=3","gravatar_id":"","url":"https://api.github.com/users/stewid","html_url":"https://github.com/stewid","followers_url":"https://api.github.com/users/stewid/followers","following_url":"https://api.github.com/users/stewid/following{/other_user}","gists_url":"https://api.github.com/users/stewid/gists{/gist_id}","starred_url":"https://api.github.com/users/stewid/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stewid/subscriptions","organizations_url":"https://api.github.com/users/stewid/orgs","repos_url":"https://api.github.com/users/stewid/repos","events_url":"https://api.github.com/users/stewid/events{/privacy}","received_events_url":"https://api.github.com/users/stewid/received_events","type":"User","site_admin":false},"created_at":"2015-07-26T10:23:26Z","updated_at":"2015-07-26T10:23:26Z","body":"Please reopen if that did not help."}}