{"comment":{"url":"https://api.github.com/repos/paulstaab/coalsimr/comments/9945612","html_url":"https://github.com/paulstaab/coalsimr/commit/76b21f566f6f8619a9bd29024deed9dc04ff32e1#commitcomment-9945612","id":9945612,"user":{"login":"lintr-bot","id":10925265,"avatar_url":"https://avatars.githubusercontent.com/u/10925265?v=3","gravatar_id":"","url":"https://api.github.com/users/lintr-bot","html_url":"https://github.com/lintr-bot","followers_url":"https://api.github.com/users/lintr-bot/followers","following_url":"https://api.github.com/users/lintr-bot/following{/other_user}","gists_url":"https://api.github.com/users/lintr-bot/gists{/gist_id}","starred_url":"https://api.github.com/users/lintr-bot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lintr-bot/subscriptions","organizations_url":"https://api.github.com/users/lintr-bot/orgs","repos_url":"https://api.github.com/users/lintr-bot/repos","events_url":"https://api.github.com/users/lintr-bot/events{/privacy}","received_events_url":"https://api.github.com/users/lintr-bot/received_events","type":"User","site_admin":false},"position":null,"line":null,"path":null,"commit_id":"76b21f566f6f8619a9bd29024deed9dc04ff32e1","created_at":"2015-02-26T21:07:41Z","updated_at":"2015-02-26T21:07:41Z","body":"[R/model_build.R:44:14:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_build.R#L44) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    model <- addInterLocusVariation(model, feat$get_group())\n             ^~~~~~~~~~~~~~~~~~~~~~\n```\n[R/model_examples.R:4:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_examples.R#L4) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  CoalModel(c(10, 15), 10) +\n  ^~~~~~~~~\n```\n[R/model_examples.R:12:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_examples.R#L12) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  CoalModel(c(3, 3, 1), 2) +\n  ^~~~~~~~~\n```\n[R/model_examples.R:23:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_examples.R#L23) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  CoalModel(c(3, 3, 1), 2) +\n  ^~~~~~~~~\n```\n[R/model_examples.R:35:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_examples.R#L35) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  CoalModel(c(3, 3, 2), 2) +\n  ^~~~~~~~~\n```\n[R/model.R:38:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model.R#L38) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎CoalModel <- function(sample_size=0, loci_number=0, loci_length=1000) {\n^~~~~~~~~\n```\n[R/model.R:82:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model.R#L82) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎checkParInRange <- function(dm, param) {\n^~~~~~~~~~~~~~~\n```\n[R/model.R:219:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model.R#L219) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎addInterLocusVariation <- function(dm, group = 0) {\n^~~~~~~~~~~~~~~~~~~~~~\n```\n[R/model_simulate.R:18:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_simulate.R#L18) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎simulate.CoalModel <- function(object, nsim = 1, seed, pars=NULL, ...) {\n^~~~~~~~~~~~~~~~~~\n```\n[R/model_simulate.R:20:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/model_simulate.R#L20) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  checkParInRange(object, pars)\n  ^~~~~~~~~~~~~~~\n```\n[R/sample_seed.R:1:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sample_seed.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎sampleSeed <- function(n=1) sample.int(2 ^ 20, n)\n^~~~~~~~~~\n```\n[R/sim_program_helpers.R:1:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_helpers.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎createParameterEnv <- function(model, parameters, ...) {\n^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:12:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L12) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**\n```r\n᠎possible.sum.stats <- get_sim_prog('ms')$possible_sum_stats\n^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:14:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L14) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎callMsms <- function(ms.args, msms.args, subgroup) {\n^~~~~~~~\n```\n[R/sim_program_msms.R:15:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L15) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  checkForMsms()\n  ^~~~~~~~~~~~\n```\n[R/sim_program_msms.R:18:11:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L18) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seed <- sampleSeed(1)\n          ^~~~~~~~~~\n```\n[R/sim_program_msms.R:33:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L33) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎checkForMsms <- function(throw.error = TRUE, silent = FALSE) {\n^~~~~~~~~~~~\n```\n[R/sim_program_msms.R:55:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L55) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateMsmsOptionsCommand <- function(dm) {\n^~~~~~~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:92:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L92) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateMsmsOptions <- function(dm, parameters, locus) {\n^~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:93:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L93) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  msms.tmp <- createParameterEnv(dm, parameters, locus = locus)\n              ^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:97:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L97) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    cmd <- generateMsmsOptionsCommand(dm)\n           ^~~~~~~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:104:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L104) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎msmsSimFunc <- function(dm, parameters) {\n^~~~~~~~~~~\n```\n[R/sim_program_msms.R:118:31:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L118) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎                        paste(generateMsOptions(dm, parameters, locus),\n                              ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:120:27:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L120) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    msms.options <- paste(generateMsmsOptions(dm, parameters, locus),\n                          ^~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:123:5:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L123) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    callMsms(ms.options, msms.options)\n    ^~~~~~~~\n```\n[R/sim_program_msms.R:127:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L127) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseMsOutput(files,\n               ^~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:140:19:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L140) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ms_cmd <- paste(generateMsOptions(model, get_parameter_table(model)$name),\n                  ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:142:21:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L142) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  msms_cmd <- paste(generateMsmsOptions(model,\n                    ^~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:152:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L152) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎createSimProgram(\"msms\", possible.features, possible.sum.stats,\n^~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:152:45:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L152) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**\n```r\n᠎createSimProgram(\"msms\", possible.features, possible.sum.stats,\n                                            ^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_msms.R:153:18:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_msms.R#L153) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎                 msmsSimFunc, msms_get_command, priority=40)\n                 ^~~~~~~~~~~\n```\n[R/sim_program_ms.R:13:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L13) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**\n```r\n᠎possible.sum.stats <- c(\"jsfs\", \"trees\", \"seg.sites\", \"file\")\n^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:18:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L18) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateMsOptionsCommand <- function(dm) {\n^~~~~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:76:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L76) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateMsOptions <- function(dm, parameters, eval_pars = TRUE) {\n^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:77:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L77) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ms.tmp <- createParameterEnv(dm, parameters)\n            ^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:81:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L81) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    cmd <- generateMsOptionsCommand(dm)\n           ^~~~~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:91:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L91) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  cmd <- generateMsOptions(model, get_parameter_table(model)$name, FALSE)\n         ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:98:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L98) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎msSingleSimFunc <- function(dm, parameters=numeric()) {\n^~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:113:19:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L113) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    ms.options <- generateMsOptions(dm, parameters, locus)\n                  ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:124:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L124) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseMsOutput(files,\n               ^~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:137:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L137) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎createSimProgram(\"ms\", possible.features, possible.sum.stats,\n^~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:137:43:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L137) *style:* **Words within variable and function names should be separated by '_' rather than '.'.**\n```r\n᠎createSimProgram(\"ms\", possible.features, possible.sum.stats,\n                                          ^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_ms.R:138:18:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_ms.R#L138) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎                 msSingleSimFunc, ms_get_command, 100)\n                 ^~~~~~~~~~~~~~~\n```\n[R/sim_program.R:15:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program.R#L15) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎createSimProgram <- function(name, possible_features, possible_sum_stats,\n^~~~~~~~~~~~~~~~\n```\n[R/sim_program_scrm.R:9:23:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_scrm.R#L9) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎                paste(generateMsOptions(dm, parameters), collapse = ' '))\n                      ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_scrm.R:29:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_scrm.R#L29) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎createSimProgram(\"scrm\", scrm_features, scrm_sum_stats,\n^~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:49:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L49) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateTreeModel <- function(dm, locus, locus_number=1) {\n^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:92:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L92) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎setSeqgenExecutable <- function(seqgen_exe) {\n^~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:104:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L104) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎callSeqgen <- function(opts, ms_files) {\n^~~~~~~~~~\n```\n[R/sim_program_seqgen.R:125:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L125) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateSeqgenOptions <- function(dm, parameters, locus,\n^~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:130:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L130) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    cmd <- generateSeqgenOptionsCmd(dm)\n           ^~~~~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:144:18:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L144) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    par_envir <- createParameterEnv(dm, parameters, locus = locus,\n                 ^~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:152:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L152) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎generateSeqgenOptionsCmd <- function(dm) {\n^~~~~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:221:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L221) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  tree_model <- generateTreeModel(dm, 1)\n                ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:225:19:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L225) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sg_cmd <- paste(generateSeqgenOptions(dm, get_parameter_table(dm)$name,\n                  ^~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:254:19:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L254) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    tree.model <- generateTreeModel(dm, locus, sim_loci)\n                  ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:262:7:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L262) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎      generateSeqgenOptions(dm, parameters, locus,\n      ^~~~~~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:263:29:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L263) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎                            sampleSeed(length(sum_stats_ms$sg_trees)))\n                            ^~~~~~~~~~\n```\n[R/sim_program_seqgen.R:265:20:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L265) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    seqgen.file <- callSeqgen(seqgen.options, sum_stats_ms$sg_trees)\n                   ^~~~~~~~~~\n```\n[R/sim_program_seqgen.R:274:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L274) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(seqgen.files,\n               ^~~~~~~~~~~~~~~~~\n```\n[R/sim_program_seqgen.R:289:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sim_program_seqgen.R#L289) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎createSimProgram(\"seq-gen\", sg_features, sg_sum_stats,\n^~~~~~~~~~~~~~~~\n```\n[R/sumstat_file.R:1:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_file.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_File <- R6Class('SumStat_File', inherit = SumStat,\n^~~~~~~~~~~~\n```\n[R/sumstat_file.R:1:51:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_file.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_File <- R6Class('SumStat_File', inherit = SumStat,\n                                                  ^~~~~~~\n```\n[R/sumstat_file.R:26:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_file.R#L26) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  SumStat_File$new(folder, groups)\n  ^~~~~~~~~~~~\n```\n[R/sumstat_ihh.R:3:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_ihh.R#L3) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_iHH <- R6Class('SumStat_iHH', inherit = SumStat,\n^~~~~~~~~~~\n```\n[R/sumstat_ihh.R:3:49:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_ihh.R#L3) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_iHH <- R6Class('SumStat_iHH', inherit = SumStat,\n                                                ^~~~~~~\n```\n[R/sumstat_ihh.R:80:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_ihh.R#L80) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎sumstat_iHH <- function(name = 'iHH', position=NA, population=1, group = 0) {\n^~~~~~~~~~~\n```\n[R/sumstat_ihh.R:81:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_ihh.R#L81) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  SumStat_iHH$new(name, position, population, group = group)\n  ^~~~~~~~~~~\n```\n[R/sumstat_jsfs.R:2:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_jsfs.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_Jsfs <- R6Class('SumStat_Jsfs', inherit = SumStat,\n^~~~~~~~~~~~\n```\n[R/sumstat_jsfs.R:2:51:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_jsfs.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_Jsfs <- R6Class('SumStat_Jsfs', inherit = SumStat,\n                                                  ^~~~~~~\n```\n[R/sumstat_jsfs.R:24:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_jsfs.R#L24) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  SumStat_Jsfs$new(name, populations, group)\n  ^~~~~~~~~~~~\n```\n[R/sumstat_omegaprime.R:2:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_omegaprime.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_OmegaPrime <- R6Class('SumStat_OmegaPrime', inherit = SumStat,\n^~~~~~~~~~~~~~~~~~\n```\n[R/sumstat_omegaprime.R:2:63:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_omegaprime.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_OmegaPrime <- R6Class('SumStat_OmegaPrime', inherit = SumStat,\n                                                              ^~~~~~~\n```\n[R/sumstat_omegaprime.R:23:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_omegaprime.R#L23) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  SumStat_OmegaPrime$new(name, population, group)\n  ^~~~~~~~~~~~~~~~~~\n```\n[R/sumstat.R:1:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat <- R6Class('SumStat', inherit = Base_Object,\n^~~~~~~\n```\n[R/sumstat.R:27:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat.R#L27) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎add_to_model.SumStat <- function(sum_stat, model, feat_name) {\n^~~~~~~~~~~~~~~~~~~~\n```\n[R/sumstat_seg_sites.R:2:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_seg_sites.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_SegSites <- R6Class('SumStat_SegSites', inherit = SumStat,\n^~~~~~~~~~~~~~~~\n```\n[R/sumstat_seg_sites.R:2:59:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_seg_sites.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_SegSites <- R6Class('SumStat_SegSites', inherit = SumStat,\n                                                          ^~~~~~~\n```\n[R/sumstat_seg_sites.R:13:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_seg_sites.R#L13) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  SumStat_SegSites$new(name, group = group)\n  ^~~~~~~~~~~~~~~~\n```\n[R/sumstat_sfs.R:2:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_sfs.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_SFS <- R6Class('SumStat_SFS', inherit = SumStat,\n^~~~~~~~~~~\n```\n[R/sumstat_sfs.R:2:49:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_sfs.R#L2) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_SFS <- R6Class('SumStat_SFS', inherit = SumStat,\n                                                ^~~~~~~\n```\n[R/sumstat_sfs.R:29:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_sfs.R#L29) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  SumStat_SFS$new(name, population, group)\n  ^~~~~~~~~~~\n```\n[R/sumstat_trees.R:1:1:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_trees.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_Trees <- R6Class('SumStat_Trees', inherit = SumStat,\n^~~~~~~~~~~~~\n```\n[R/sumstat_trees.R:1:53:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_trees.R#L1) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎SumStat_Trees <- R6Class('SumStat_Trees', inherit = SumStat,\n                                                    ^~~~~~~\n```\n[R/sumstat_trees.R:9:7:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_trees.R#L9) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎      parseTrees(files[[1]], private$loci_length, tempfile)\n      ^~~~~~~~~~\n```\n[R/sumstat_trees.R:19:5:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/R/sumstat_trees.R#L19) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    SumStat_Trees$new(locus_length, group)\n    ^~~~~~~~~~~~~\n```\n[tests/testthat/test-cache.R:12:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-cache.R#L12) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model1 <- CoalModel(5:6, 100)\n            ^~~~~~~~~\n```\n[tests/testthat/test-cache.R:18:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-cache.R#L18) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model2 <- CoalModel(5:6, 100)\n            ^~~~~~~~~\n```\n[tests/testthat/test-feature-selection.R:4:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-feature-selection.R#L4) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-feature-selection.R:16:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-feature-selection.R#L16) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-feature-selection.R:24:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-feature-selection.R#L24) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-locus.R:27:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-locus.R#L27) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model2 <- CoalModel(10) + locus_averaged(10, 1010)\n            ^~~~~~~~~\n```\n[tests/testthat/test-locus.R:43:8:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-locus.R#L43) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  m <- CoalModel(10) +\n       ^~~~~~~~~\n```\n[tests/testthat/test-model.R:5:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L5) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(11:12, 111, 1234)\n           ^~~~~~~~~\n```\n[tests/testthat/test-model.R:16:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L16) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(11:12, 100) + par_range(\"theta\", 1, 5)\n           ^~~~~~~~~\n```\n[tests/testthat/test-model.R:29:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L29) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100)\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:33:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L33) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100)\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:38:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L38) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100)\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:42:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L42) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100)\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:47:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L47) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100) + (Feature$new('blub', 5) + par_range('a', 1, 5))\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:50:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L50) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100) + (Feature$new('blub', 5) + SumStat$new('5'))\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:50:59:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L50) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(11:12, 100) + (Feature$new('blub', 5) + SumStat$new('5'))\n                                                          ^~~~~~~\n```\n[tests/testthat/test-model.R:56:39:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L56) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_equal(get_summary_statistics(CoalModel(1:2, 2)), character())\n                                      ^~~~~~~~~\n```\n[tests/testthat/test-model.R:118:14:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L118) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm.test <- CoalModel(11:12, 100) +\n             ^~~~~~~~~\n```\n[tests/testthat/test-model.R:125:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L125) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  checkParInRange(model_theta_tau(), c(1, 5))\n  ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:126:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L126) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  checkParInRange(model_theta_tau(), c(2, 7))\n  ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:127:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L127) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  checkParInRange(model_theta_tau(), c(0.5, 7.7))\n  ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:128:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L128) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), c(0, 5)))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:129:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L129) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), c(0, -1)))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:130:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L130) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), c(10, 1)))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:131:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L131) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), c(100, 100)))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:132:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L132) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), 1))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:133:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L133) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), matrix(1, 2, 2)))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:134:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L134) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(checkParInRange(model_theta_tau(), NULL))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-model.R:139:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L139) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(11:12, 10) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-model.R:167:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L167) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(10, 11, 101) + locus_averaged(12, 102, group = 2)\n           ^~~~~~~~~\n```\n[tests/testthat/test-model.R:242:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L242) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(25:26, 100)\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:270:9:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L270) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm <- CoalModel(10:11, 100)\n        ^~~~~~~~~\n```\n[tests/testthat/test-model.R:278:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L278) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(1:4 * 2, 100)\n           ^~~~~~~~~\n```\n[tests/testthat/test-model.R:299:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-model.R#L299) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-paramaters.R:64:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-paramaters.R#L64) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  CoalModel(5:6, 10, 100) + par_expr(2 * theta)\n  ^~~~~~~~~\n```\n[tests/testthat/test-paramaters.R:65:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-paramaters.R#L65) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  CoalModel(5:6, 10, 100) + par_expr(2 * theta) + par_expr(5)\n  ^~~~~~~~~\n```\n[tests/testthat/test-paramaters.R:70:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-paramaters.R#L70) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10, 100) + par_range('theta', 1, 2)\n           ^~~~~~~~~\n```\n[tests/testthat/test-paramaters.R:75:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-paramaters.R#L75) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10, 100) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:5:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L5) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  positions <- parseMsPositions(\"positions: 0.0010 0.0474 0.3171\")\n               ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:10:23:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L10) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_equal(length(parseMsPositions(\"positions: 0.1 0.2 0.3 0.4 0.5\")), 5)\n                      ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:11:23:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L11) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_equal(length(parseMsPositions(\"positions: 0.1\")), 1)\n                      ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:12:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L12) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(parseMsPositions(\"0.1 0.2 0.3\"))\n               ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:13:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L13) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(parseMsPositions(\" \"))\n               ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:14:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L14) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(parseMsPositions(\"segsites: 0\"))\n               ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:25:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L25) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(parseMsOutput(list(\"bulb.txt\"), ss, ln))\n               ^~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-ms-output.R:27:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-ms-output.R#L27) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseMsOutput(ms.file, ss, ln)\n               ^~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:4:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L4) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm_tmp <- CoalModel(c(4, 6, 1), 2, 10) +\n            ^~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:36:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L36) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(seqgen_file), 11,\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:70:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L70) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(seqgen_file), 11,\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:82:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L82) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(seqgen_file, seqgen_file),\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:94:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L94) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(c(seqgen_file, seqgen_file, seqgen_file)),\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:135:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L135) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(c(seqgen_file_1,\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:143:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L143) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(c(seqgen_file_1,\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-seqgen-output.R:151:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-seqgen-output.R#L151) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  seg_sites <- parseSeqgenOutput(list(c(seqgen_file_2,\n               ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-parse-trees.R:30:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-trees.R#L30) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  tree_files <- parseTrees(sim_output, c(0, 0, 20, 0, 0), tempfile)\n                ^~~~~~~~~~\n```\n[tests/testthat/test-parse-trees.R:42:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-trees.R#L42) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  tree_files <- parseTrees(sim_output, c(2, 4, 8, 2, 4), tempfile)\n                ^~~~~~~~~~\n```\n[tests/testthat/test-parse-trees.R:55:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-parse-trees.R#L55) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  tree_files <- parseTrees(sim_output, c(9, 2, 2, 5, 2), tempfile)\n                ^~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:4:8:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L4) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  if (!checkForMsms(FALSE, TRUE)) skip('msms not installed')\n       ^~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:8:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L8) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  out_file <- callMsms(ms.args, msms.args)\n              ^~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:10:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L10) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  out_file_2 <- callMsms(ms.args, msms.args)\n                ^~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:12:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L12) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  out_file_3 <- callMsms(ms.args, msms.args)\n                ^~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:20:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L20) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  par_envir <- createParameterEnv(model_theta_tau(), c(1,5))\n               ^~~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:24:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L24) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  par_envir <- createParameterEnv(model_theta_tau(), c(1,5), locus = 17)\n               ^~~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:27:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L27) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  par_envir <- createParameterEnv(model_theta_tau(), c(1,5),\n               ^~~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:39:35:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L39) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  opts <- paste(eval(parse(text = generateMsmsOptionsCommand(dm))),\n                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:61:8:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L61) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  if (!checkForMsms(FALSE, TRUE)) skip('msms not installed')\n       ^~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:67:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L67) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sum_stats <- msmsSimFunc(dm, c(1, 5))\n               ^~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:72:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L72) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sum_stats2 <- msmsSimFunc(dm, c(1, 5))\n                ^~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:78:8:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L78) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  if (!checkForMsms(FALSE, TRUE)) skip('msms not installed')\n       ^~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:80:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L80) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm_tmp <- CoalModel(5, 2) +\n            ^~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:86:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L86) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sum_stats <- msmsSimFunc(dm_tmp, c(3))\n               ^~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:94:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L94) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stats <- msmsSimFunc(model, c(1,5))\n           ^~~~~~~~~~~\n```\n[tests/testthat/test-simprog-msms.R:99:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-msms.R#L99) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stats <- msmsSimFunc(model, c(1,5))\n           ^~~~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:6:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L6) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sum_stats <- msSingleSimFunc(dm_tt, c(1, 10))\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:17:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L17) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm_tmp <- CoalModel(5:6, 2) +\n            ^~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:23:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L23) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sum_stats <- msSingleSimFunc(dm_tmp)\n               ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:28:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L28) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  sum_stats2 <- msSingleSimFunc(dm_tmp)\n                ^~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:39:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L39) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm_tmp <- CoalModel(5:6, 1) +\n            ^~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:52:25:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L52) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  cmd <- ms_get_command(CoalModel(5:6, 17))\n                        ^~~~~~~~~\n```\n[tests/testthat/test-simprog-ms.R:57:25:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-ms.R#L57) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  cmd <- ms_get_command(CoalModel(5:6, 17) +\n                        ^~~~~~~~~\n```\n[tests/testthat/test-sim-program.R:9:5:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sim-program.R#L9) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    createSimProgram(\"test1\", \"feature\", \"sum.stat\", sin)\n    ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-sim-program.R:12:5:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sim-program.R#L12) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    createSimProgram(\"test2\", \"feature\", \"sum.stat\", sin, cos)\n    ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-sim-program.R:15:5:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sim-program.R#L15) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    createSimProgram(\"test2\", \"feature\", \"sum.stat\", sin, cos, tan)\n    ^~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:6:11:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L6) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  opts <- generateSeqgenOptions(dm.hky, c(1, 10), 1, c(0, 0, 10, 0, 0), 1)\n          ^~~~~~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:21:14:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L21) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎    dm.ms <- generateTreeModel(dm, 1)\n             ^~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:68:8:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L68) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  if (!checkForMsms(FALSE, TRUE)) skip('msms not installed')\n       ^~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:96:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L96) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(c(3, 3), 10) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:100:16:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L100) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(generateSeqgenOptionsCmd(model))\n               ^~~~~~~~~~~~~~~~~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:157:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L157) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(c(5,5,2), 1, 100) +\n           ^~~~~~~~~\n```\n[tests/testthat/test-simprog-seqgen.R:189:13:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-simprog-seqgen.R#L189) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  dm_tmp <- CoalModel(c(3, 3, 1), 2) +\n            ^~~~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:4:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L4) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ss1 <- SumStat$new('1')\n         ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:8:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L8) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ss1 <- SumStat$new('1', 25)\n         ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:16:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L16) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ss1 <- SumStat$new('1')\n         ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:18:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L18) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ss1 <- SumStat$new('1', group = 2)\n         ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:24:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L24) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ss1 <- SumStat$new('test')\n         ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:27:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L27) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  ss1 <- SumStat$new('test', group = 2)\n         ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:33:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L33) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10) + SumStat$new('1')\n           ^~~~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:33:33:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L33) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10) + SumStat$new('1')\n                                ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:35:24:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L35) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_error(model + SumStat$new('1'))\n                       ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:37:20:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L37) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- model + SumStat$new('2')\n                   ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:40:20:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L40) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- model + SumStat$new('3', group=2)\n                   ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:47:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L47) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10) + SumStat$new('1')\n           ^~~~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:47:33:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L47) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10) + SumStat$new('1')\n                                ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:50:20:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L50) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- model + SumStat$new('2', 15)\n                   ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:53:20:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L53) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- model + SumStat$new('3', 15)\n                   ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:59:49:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L59) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  Stat_Sum <- R6::R6Class('Stat_Sum', inherit = SumStat,\n                                                ^~~~~~~\n```\n[tests/testthat/test-sumstat-class.R:64:12:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-class.R#L64) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  model <- CoalModel(5:6, 10) + Stat_Sum$new('sum')\n           ^~~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:8:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L8) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎model <- CoalModel(4, 1, 337)\n         ^~~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:13:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L13) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH(population = 1)\n  ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:13:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L13) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH(population = 1)\n              ^~~~~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:14:14:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L14) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  snp_map <- stat_iHH$segsites_to_snp_map(seg_sites, pos)\n             ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:22:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L22) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH(population = 1)\n  ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:22:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L22) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH(population = 1)\n              ^~~~~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:23:17:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L23) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  haplotypes <- stat_iHH$segsites_to_haplo(seg_sites, 1:4)\n                ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:31:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L31) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH()\n  ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:31:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L31) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH()\n              ^~~~~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:32:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L32) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  iHH <- stat_iHH$calculate(list(seg_sites), NULL, model)\n  ^~~\n```\n[tests/testthat/test-sumstat-iHH.R:32:10:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L32) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  iHH <- stat_iHH$calculate(list(seg_sites), NULL, model)\n         ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:33:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L33) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_that(iHH, is_a('list'))\n              ^~~\n```\n[tests/testthat/test-sumstat-iHH.R:34:23:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L34) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_equal(length(iHH), 1)\n                      ^~~\n```\n[tests/testthat/test-sumstat-iHH.R:35:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L35) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_that(iHH[[1]], is_a('matrix'))\n              ^~~\n```\n[tests/testthat/test-sumstat-iHH.R:36:20:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L36) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_equal(dim(iHH[[1]]), c(2,5))\n                   ^~~\n```\n[tests/testthat/test-sumstat-iHH.R:38:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L38) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH(position = 0.5)\n  ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:38:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L38) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  stat_iHH <- sumstat_iHH(position = 0.5)\n              ^~~~~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:39:3:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L39) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  iHH2 <- stat_iHH$calculate(list(seg_sites), NULL, model)\n  ^~~~\n```\n[tests/testthat/test-sumstat-iHH.R:39:11:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L39) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  iHH2 <- stat_iHH$calculate(list(seg_sites), NULL, model)\n          ^~~~~~~~\n```\n[tests/testthat/test-sumstat-iHH.R:40:15:](https://github.com/paulstaab/coalsimr/blob/76b21f566f6f8619a9bd29024deed9dc04ff32e1/tests/testthat/test-sumstat-iHH.R#L40) *style:* **Variable and function names should be all lowercase.**\n```r\n᠎  expect_that(iHH2, is_a('list'))\n              ^~~~\n```\n"}}