{"action":"created","comment":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/comments/29304168","id":29304168,"diff_hunk":"@@ -0,0 +1,37 @@\n+class Placnet < Formula\n+  homepage \"https://sourceforge.net/projects/placnet\"\n+  # tag \"bioinformatics\"\n+  # doi \"10.1371/journal.pgen.1004766\"\n+\n+  depends_on \"Getopt::Long\" => :perl\n+  depends_on \"blast\"\n+  depends_on \"velvet\" => :optional\n+\n+  url \"https://downloads.sourceforge.net/project/placnet/placnet.pl\"\n+  sha256 \"c25704c5ba7086121cc20309bc93f7ed123ca68a036c8678d7197ae6690dec08\"\n+  version \"1.01\"\n+\n+  resource \"manual\" do\n+    url \"https://downloads.sourceforge.net/project/placnet/Manual_v1.01.pdf\"\n+    sha256 \"9fdedc8539546c4662ed7d17069cea4773b4bfe88edc29cc97a8cdcfae32b87c\"\n+  end\n+\n+  def install\n+    inreplace \"placnet.pl\", \"/usr/bin/perl\", \"/usr/bin/env perl\"","path":"placnet.rb","position":20,"original_position":20,"commit_id":"34ce5c6b9543b47ad2562e9994a0c0db3e533701","original_commit_id":"f839c8b199df1d588779c8208bf357046b8c6648","user":{"login":"tdsmith","id":173889,"avatar_url":"https://avatars.githubusercontent.com/u/173889?v=3","gravatar_id":"","url":"https://api.github.com/users/tdsmith","html_url":"https://github.com/tdsmith","followers_url":"https://api.github.com/users/tdsmith/followers","following_url":"https://api.github.com/users/tdsmith/following{/other_user}","gists_url":"https://api.github.com/users/tdsmith/gists{/gist_id}","starred_url":"https://api.github.com/users/tdsmith/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tdsmith/subscriptions","organizations_url":"https://api.github.com/users/tdsmith/orgs","repos_url":"https://api.github.com/users/tdsmith/repos","events_url":"https://api.github.com/users/tdsmith/events{/privacy}","received_events_url":"https://api.github.com/users/tdsmith/received_events","type":"User","site_admin":false},"body":"Usually \"no,\" because what's the difference? Always using the system interpreter is probably more deterministic.\r\n\r\nA system without a /usr/bin/perl would be pretty weird; if the fear is that it's potentially ancient because maybe we're running on legacy RHEL or something then this is fine.","created_at":"2015-04-29T01:13:28Z","updated_at":"2015-04-29T01:13:28Z","html_url":"https://github.com/Homebrew/homebrew-science/pull/2171#discussion_r29304168","pull_request_url":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/2171","_links":{"self":{"href":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/comments/29304168"},"html":{"href":"https://github.com/Homebrew/homebrew-science/pull/2171#discussion_r29304168"},"pull_request":{"href":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/2171"}}},"pull_request":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/pulls/2171","id":34319388,"html_url":"https://github.com/Homebrew/homebrew-science/pull/2171","diff_url":"https://github.com/Homebrew/homebrew-science/pull/2171.diff","patch_url":"https://github.com/Homebrew/homebrew-science/pull/2171.patch","issue_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2171","number":2171,"state":"open","locked":false,"title":"placnet 1.01 (new formula)","user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"body":"Placnet is a new tools for plasmid analysis in NGS projects. Placnet has been written in Perl. It's been optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies.\r\n\r\nThe input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. 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