{"action":"created","issue":{"url":"https://api.github.com/repos/cBio/cbio-cluster/issues/228","labels_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/228/labels{/name}","comments_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/228/comments","events_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/228/events","html_url":"https://github.com/cBio/cbio-cluster/issues/228","id":60169001,"number":228,"title":"Weird processes we don't think are related but would like to remove","user":{"login":"tatarsky","id":6439722,"avatar_url":"https://avatars.githubusercontent.com/u/6439722?v=3","gravatar_id":"","url":"https://api.github.com/users/tatarsky","html_url":"https://github.com/tatarsky","followers_url":"https://api.github.com/users/tatarsky/followers","following_url":"https://api.github.com/users/tatarsky/following{/other_user}","gists_url":"https://api.github.com/users/tatarsky/gists{/gist_id}","starred_url":"https://api.github.com/users/tatarsky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tatarsky/subscriptions","organizations_url":"https://api.github.com/users/tatarsky/orgs","repos_url":"https://api.github.com/users/tatarsky/repos","events_url":"https://api.github.com/users/tatarsky/events{/privacy}","received_events_url":"https://api.github.com/users/tatarsky/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2015-03-06T22:35:58Z","updated_at":"2015-03-07T00:10:31Z","closed_at":null,"body":"We are looking all over for a cause of this. While we don't think these items are related, we've got some \"cruft\" on the nodes I'd like to mention so I'm going to mention them here.\r\n\r\nWe don't think this is a running job:\r\n\r\ngpu-1-4:\r\n```\r\n19165 ?        S      0:00 sh -c \"/usr/local/cuda/bin/nvcc\" --ptx --machine 64 -arch=sm_30 -o \"/scratch/2449664.mskcc-fe1.local/openmmTempKernel0x247b230_19125.ptx\" --use_fast_math \"/scratch/2449664.mskcc-fe1.local/openmmTempKernel0x247b230_19125.cu\" 2> \"/scratch/2449664.mskcc-fe1.local/openmmTempKernel0x247b230_19125.log\"\r\n19166 ?        R    219259:25 /usr/local/cuda/bin/nvcc --ptx --machine 64 -arch sm_30 -o /scratch/2449664.mskcc-fe1.local/openmmTempKernel0x247b230_19125.ptx --use_fast_math /scratch/2449664.mskcc-fe1.local/openmmTempKernel0x247b230_19125.cu\r\n```\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/cBio/cbio-cluster/issues/comments/77659521","html_url":"https://github.com/cBio/cbio-cluster/issues/228#issuecomment-77659521","issue_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/228","id":77659521,"user":{"login":"jchodera","id":3656088,"avatar_url":"https://avatars.githubusercontent.com/u/3656088?v=3","gravatar_id":"","url":"https://api.github.com/users/jchodera","html_url":"https://github.com/jchodera","followers_url":"https://api.github.com/users/jchodera/followers","following_url":"https://api.github.com/users/jchodera/following{/other_user}","gists_url":"https://api.github.com/users/jchodera/gists{/gist_id}","starred_url":"https://api.github.com/users/jchodera/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jchodera/subscriptions","organizations_url":"https://api.github.com/users/jchodera/orgs","repos_url":"https://api.github.com/users/jchodera/repos","events_url":"https://api.github.com/users/jchodera/events{/privacy}","received_events_url":"https://api.github.com/users/jchodera/received_events","type":"User","site_admin":false},"created_at":"2015-03-07T00:10:31Z","updated_at":"2015-03-07T00:10:31Z","body":"@danielparton: You may have to use the script that does `kill -9` for zombie `nvcc` processes."}}