{"action":"created","issue":{"url":"https://api.github.com/repos/NESCent/r-popgen-hackathon/issues/19","labels_url":"https://api.github.com/repos/NESCent/r-popgen-hackathon/issues/19/labels{/name}","comments_url":"https://api.github.com/repos/NESCent/r-popgen-hackathon/issues/19/comments","events_url":"https://api.github.com/repos/NESCent/r-popgen-hackathon/issues/19/events","html_url":"https://github.com/NESCent/r-popgen-hackathon/issues/19","id":65673454,"number":19,"title":"Releasing packages","user":{"login":"thibautjombart","id":10757154,"avatar_url":"https://avatars.githubusercontent.com/u/10757154?v=3","gravatar_id":"","url":"https://api.github.com/users/thibautjombart","html_url":"https://github.com/thibautjombart","followers_url":"https://api.github.com/users/thibautjombart/followers","following_url":"https://api.github.com/users/thibautjombart/following{/other_user}","gists_url":"https://api.github.com/users/thibautjombart/gists{/gist_id}","starred_url":"https://api.github.com/users/thibautjombart/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thibautjombart/subscriptions","organizations_url":"https://api.github.com/users/thibautjombart/orgs","repos_url":"https://api.github.com/users/thibautjombart/repos","events_url":"https://api.github.com/users/thibautjombart/events{/privacy}","received_events_url":"https://api.github.com/users/thibautjombart/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-04-01T12:32:31Z","updated_at":"2015-04-01T13:27:45Z","closed_at":null,"body":"@emmanuelparadis @jgx65 @zkamvar @KlausVigo \r\nShall we coordinate for the releases of our packages?\r\nFrom the most 'low level' (required by a lot of packages) to the high levels: \r\n*ape, adegenet, pegas, hierfstat, phangorn, apex*\r\nDo I get the order approximately right?\r\n\r\nIn any case, as CRAN now asks maintainer to also check backward dependencies, we probably need to release everything at the same time no matter which ways dependencies go.\r\n\r\n@emmanuelparadis has anything in ape changed? If not, that makes everything easier - too many packages depend on it ;) \r\n\r\nSo, please amend/edit as needed, and tick if ready to release\r\n- [ ] adegenet: only more testing left to do (recompile tutorials)\r\n- [ ] pegas: \r\n- [ ] hierfstat: \r\n- [ ] phangorn: @KlausVigo I think is ready?  \r\n- [ ] apex: nearly ready to go; we just need to ammend the doc a bit\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/NESCent/r-popgen-hackathon/issues/comments/88479926","html_url":"https://github.com/NESCent/r-popgen-hackathon/issues/19#issuecomment-88479926","issue_url":"https://api.github.com/repos/NESCent/r-popgen-hackathon/issues/19","id":88479926,"user":{"login":"emmanuelparadis","id":10957055,"avatar_url":"https://avatars.githubusercontent.com/u/10957055?v=3","gravatar_id":"","url":"https://api.github.com/users/emmanuelparadis","html_url":"https://github.com/emmanuelparadis","followers_url":"https://api.github.com/users/emmanuelparadis/followers","following_url":"https://api.github.com/users/emmanuelparadis/following{/other_user}","gists_url":"https://api.github.com/users/emmanuelparadis/gists{/gist_id}","starred_url":"https://api.github.com/users/emmanuelparadis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/emmanuelparadis/subscriptions","organizations_url":"https://api.github.com/users/emmanuelparadis/orgs","repos_url":"https://api.github.com/users/emmanuelparadis/repos","events_url":"https://api.github.com/users/emmanuelparadis/events{/privacy}","received_events_url":"https://api.github.com/users/emmanuelparadis/received_events","type":"User","site_admin":false},"created_at":"2015-04-01T13:27:45Z","updated_at":"2015-04-01T13:27:45Z","body":"For ape: I don't think the new features will impact other packages. You can check what has already been included: [http://ape-package.ird.fr/NEWS]. Note: the current version (on CRAN) is 3.2 and the testing version (not on CRAN) is 3.2-0.x (with x = 8 currently).\r\n\r\nFor pegas: I'm still conducting some tests of the new VCF code (and fixing some bugs...). A few days should be enough.\r\n\r\nShould we really submit all packages to CRAN at the same time? We have added quite a few new things everywhere, so if there are problems, it might be tricky to find where they come from. The alternative would be to submit them sequentially, waiting a few days after between two submissions (CRAN used to check all packages every 24 hrs, but that was some years ago when there were less packages than now...) In that case, we may not be so strict on the sequence. It seems the following sequences might be enough:\r\n\r\nadegenet > pegas\r\nadegenet > hierfstat\r\nadegenet > apex\r\nphangorn > apex\r\n\r\nWhat do you think?"}}