{"action":"created","issue":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/18","labels_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18/comments","events_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18/events","html_url":"https://github.com/cjfields/redmine-test/issues/18","id":110303982,"number":18,"title":"Have Bio::SearchIO::blast methods available for other BLAST parsers","user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Category:%20Bio::Search/Bio::SearchIO","name":"Category: 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Name: **Chris Fields** (@cjfields)\nOriginal Redmine Issue: 2247, https://redmine.open-bio.org/issues/2247\nOriginal Date: 2007-03-22\nOriginal Assignee: Bioperl Guts\n\n---\n\nFrom the mail list (3/22/2007, Kevin Brown):\n\nI was looking through the deobfuscator after creating a blast file\nparser that failed on parsing a blast XML file due to a missing method\nand I see there are actually quite a few missing.\n\nFound in Bio::SearchIO::blast, but not Bio::SearchIO::blastxml or\nBio::SearchIO::blasttable\nbest\\_hit\\_only\ncheck\\_all\\_hits\ninclusion\\_threshold\nmax\\_significance\nmin\\_query\\_length\nmin\\_score\nsignif\n\nI use the min\\_score in my parser so that blastall can be run with a high\nE and later filtered, or refiltered for other things after the blast is\ndone.\n\nIt would be nice if all the blast parsers had most of these missing\nfunctions to at least keep them consistent with each other for parsing\nblast reports :)\n\n\n\n\n"},"comment":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/comments/146310545","html_url":"https://github.com/cjfields/redmine-test/issues/18#issuecomment-146310545","issue_url":"https://api.github.com/repos/cjfields/redmine-test/issues/18","id":146310545,"user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"created_at":"2015-10-07T19:56:28Z","updated_at":"2015-10-07T19:56:28Z","body":"---\n\nOriginal Redmine Comment\nAuthor Name: **Chris Fields** \nOriginal Date: 2008-11-29T15:35:32Z\n\n---\n\nNo more enhancement requests for the 1.6 release; pushing to 1.6.x\n\n"}}