{"action":"opened","issue":{"url":"https://api.github.com/repos/genome/bam-readcount/issues/24","labels_url":"https://api.github.com/repos/genome/bam-readcount/issues/24/labels{/name}","comments_url":"https://api.github.com/repos/genome/bam-readcount/issues/24/comments","events_url":"https://api.github.com/repos/genome/bam-readcount/issues/24/events","html_url":"https://github.com/genome/bam-readcount/issues/24","id":108618024,"number":24,"title":"Does not report results for some 1-position regions ","user":{"login":"IgorFobia","id":819707,"avatar_url":"https://avatars.githubusercontent.com/u/819707?v=3","gravatar_id":"","url":"https://api.github.com/users/IgorFobia","html_url":"https://github.com/IgorFobia","followers_url":"https://api.github.com/users/IgorFobia/followers","following_url":"https://api.github.com/users/IgorFobia/following{/other_user}","gists_url":"https://api.github.com/users/IgorFobia/gists{/gist_id}","starred_url":"https://api.github.com/users/IgorFobia/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/IgorFobia/subscriptions","organizations_url":"https://api.github.com/users/IgorFobia/orgs","repos_url":"https://api.github.com/users/IgorFobia/repos","events_url":"https://api.github.com/users/IgorFobia/events{/privacy}","received_events_url":"https://api.github.com/users/IgorFobia/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-09-28T09:13:18Z","updated_at":"2015-09-28T09:13:18Z","closed_at":null,"body":"Hello,\r\n\r\nI gave as an additional input a list of regions, each of those made by just one position (therefore start=end). I see the output does not include all those positions; I checked a missing one and I saw that there were no alignments mapping it. If this is the issue, I guess it should be still present in the output but with depth=0.\r\n\r\nThank you!"}}