{"push_id":764783359,"size":1,"distinct_size":1,"ref":"refs/heads/REGN-Legacy-project","head":"f2e908abc4e538837d9ef5d38409d88be42e205d","before":"1f5dff138fed19774d15b56b0fc915d6e610bf5b","commits":[{"sha":"f2e908abc4e538837d9ef5d38409d88be42e205d","author":{"email":"a0bd7d9fd46aaad1af8a040872a1cc095e39006b@gmail.com","name":"Tiange C."},"message":"Create match2bed.pl\n\nConvert BLAT result to .BED format\r\n\r\nThis script converts the STEP 5 filtered BLAT result to the .BED format that can be visualized in UCSC Genome Browser. The output files are: recombination_oligos.txt (contains design features such as HU, HD, SU, SD, HUF, HUR, HDF, HDR, etc.)\r\ntaqman.txt (contains TaqMan assays, such as TUF, TUP, TUR, TDF, TDP, TDR)\r\ndeletion.txt (contains calculated deletions)\r\n\r\nRequirements: List::Util module (Install first if one doesn’t have one) \r\n                        Perl script and match.txt are in the same folder.\r\n\r\nExecute: perl match2bed.pl\r\n\r\nINPUT: match.txt\r\nOUTPUT: recomb_oligos.txt\r\n\t         taqman.txt\r\n                 deletion.txt","distinct":true,"url":"https://api.github.com/repos/AlexTRee/Bioinformatics/commits/f2e908abc4e538837d9ef5d38409d88be42e205d"}]}