{"comment":{"url":"https://api.github.com/repos/lkovanen/TMFinder/comments/12510449","html_url":"https://github.com/lkovanen/TMFinder/commit/6144ab8b0e3b6fdca31a6f5290e034ecd8359b29#commitcomment-12510449","id":12510449,"user":{"login":"kennethliukai","id":7746298,"avatar_url":"https://avatars.githubusercontent.com/u/7746298?v=3","gravatar_id":"","url":"https://api.github.com/users/kennethliukai","html_url":"https://github.com/kennethliukai","followers_url":"https://api.github.com/users/kennethliukai/followers","following_url":"https://api.github.com/users/kennethliukai/following{/other_user}","gists_url":"https://api.github.com/users/kennethliukai/gists{/gist_id}","starred_url":"https://api.github.com/users/kennethliukai/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kennethliukai/subscriptions","organizations_url":"https://api.github.com/users/kennethliukai/orgs","repos_url":"https://api.github.com/users/kennethliukai/repos","events_url":"https://api.github.com/users/kennethliukai/events{/privacy}","received_events_url":"https://api.github.com/users/kennethliukai/received_events","type":"User","site_admin":false},"position":null,"line":null,"path":"","commit_id":"6144ab8b0e3b6fdca31a6f5290e034ecd8359b29","created_at":"2015-08-04T08:31:26Z","updated_at":"2015-08-04T08:31:26Z","body":"Hi Kovanen,\r\nCould you please explain the content of the output file? Take the output file of test_small as an example, the output file gives\r\ncount     ref_avg       ratio         ref_std       N_ref N_lt_ref z-score       N_loc_tot   N_loc       N_loc_ref     N [node:color ...] edges ...\r\n9         9.00          1.0000        0.0000        10    0        0.0000        4           4           4.00          3 [0:1,1:42,2:66] 0,2 1,0 \r\n7         7.00          1.0000        0.0000        10    0        0.0000        2           2           2.00          3 [0:1,1:42,2:42] 0,1 2,0 \r\n6         6.00          1.0000        0.0000        10    0        0.0000        1           1           1.00          3 [0:1,1:66,2:66] 0,1 2,0 \r\n4         3.10          1.2903        0.3000        10    0        3.0000        4           2           1.10          5 [0:1,1:1,2:42,3:42,4:66] 0,4 1,0 1,2 3,0 3,1 \r\n3         3.50          0.8571        0.5000        10    5        -1.0000       4           1           1.50          5 [0:1,1:1,2:42,3:42,4:66] 0,2 1,0 1,4 3,0 3,1 \r\n3         3.00          1.0000        0.0000        10    0        0.0000        2           1           1.00          5 [0:1,1:1,2:42,3:66,4:66] 0,3 1,0 1,3 2,0 4,1 \r\n3         3.00          1.0000        0.0000        10    0        0.0000        2           1           1.00          5 [0:1,1:1,2:42,3:66,4:66] 0,3 1,0 1,3 2,1 4,0 \r\n1         1.00          1.0000        0.0000        10    0        0.0000        1           1           1.00          7 [0:1,1:1,2:1,3:42,4:42,5:66,6:66] 0,5 1,2 1,5 2,0 2,3 4,1 4,2 6,0 \r\n\r\nI don't understand the meaning of the last two columns [node:color ...] edges ... what's the meaning of node color ? Is it node type? but there is no node type 1 but only 42 and 66 in the node_types.dat file. And how to explain 'edges' in the last column? For example, the last column in the last row which I give above is 0,5 1,2 1,5 2,0 2,3 4,1 4,2 6,0 , what's the meaning of 0,5?Is it a edge pointing from node 0 to node 5? But there is no node 5 in the input graph. Last question, the documentation of tmf (bin/tmf --help) tells there should be motif (column 10) in the output file. But I cannot find which column represents motif. Thanks for your great help."}}