{"comment":{"url":"https://api.github.com/repos/barronh/pygeos2cmaq/comments/11085671","html_url":"https://github.com/barronh/pygeos2cmaq/commit/7252c3eadf1494bad46236922e15d636bdf30cf9#commitcomment-11085671","id":11085671,"user":{"login":"barronh","id":1191149,"avatar_url":"https://avatars.githubusercontent.com/u/1191149?v=3","gravatar_id":"","url":"https://api.github.com/users/barronh","html_url":"https://github.com/barronh","followers_url":"https://api.github.com/users/barronh/followers","following_url":"https://api.github.com/users/barronh/following{/other_user}","gists_url":"https://api.github.com/users/barronh/gists{/gist_id}","starred_url":"https://api.github.com/users/barronh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/barronh/subscriptions","organizations_url":"https://api.github.com/users/barronh/orgs","repos_url":"https://api.github.com/users/barronh/repos","events_url":"https://api.github.com/users/barronh/events{/privacy}","received_events_url":"https://api.github.com/users/barronh/received_events","type":"User","site_admin":false},"position":null,"line":null,"path":"","commit_id":"7252c3eadf1494bad46236922e15d636bdf30cf9","created_at":"2015-05-07T12:27:57Z","updated_at":"2015-05-07T12:27:57Z","body":"Have you successfully read this file with another reader (e.g., IDL)?  This error suggests that the file might be corrupt, incomplete, or written out of time order.\n\n\nBarron Henderson, Ph.D.\nAsst. Professor, University of Florida\nDept. of Environmental Engineering Sciences\n420 Black Hall; 352-846-2695\n\n\n> On May 6, 2015, at 11:40 PM, heatheryzy <notifications@github.com> wrote:\n> \n> Hi Barronh,\n> \n> Thank you for providing the wonderful tool!\n> After successfully installed the package, I think (follow the instruction for Linux user w/o permission). I met a \"AssertionError\" when running the program. Would you have any idea on this?\n> \n> Below is all the message I got:\n> \n> Jun2010/geos2cmaq.20100531.nc\n> \n> /home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/PseudoNetCDF/geoschemfiles/_bpch.py:761: UserWarning:\n> Cannot read whole file; assuming partial time block is at the end; skipping partial time record\n> \n> Traceback (most recent call last):\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/runpy.py\", line 162, in run_module_as_main\n> \"__main_\", fname, loader, pkg_name)\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/runpy.py\", line 72, in run_code\n> exec code in run_globals\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/pygeos2cmaq/__main_.py\", line 43, in \n> run()\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/pygeos2cmaq/main.py\", line 40, in run\n> outf = process(config = loader(yamlpath), verbose = options.verbose)\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/pygeos2cmaq/process.py\", line 63, in process\n> out = make_out(config, dates)\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/pygeos2cmaq/process.py\", line 261, in make_out\n> file_objs = get_files(dates[0])\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/pygeos2cmaq/process.py\", line 466, in get_files\n> onf = nf = eval(r)(p)\n> File \"/home/zye01/CMAQ/GEOS2CMAQ/miniconda/lib/python2.7/site-packages/PseudoNetCDF/geoschemfiles/bpch.py\", line 813, in __init_\n> assert((tid[0] == tid).all())\n> \n> AssertionError\n> \n> Thank you!\n> \n> —\n> Reply to this email directly or view it on GitHub.\n> \n\n\n\n"}}