{"action":"created","issue":{"url":"https://api.github.com/repos/NeuroVault/NeuroVault/issues/135","labels_url":"https://api.github.com/repos/NeuroVault/NeuroVault/issues/135/labels{/name}","comments_url":"https://api.github.com/repos/NeuroVault/NeuroVault/issues/135/comments","events_url":"https://api.github.com/repos/NeuroVault/NeuroVault/issues/135/events","html_url":"https://github.com/NeuroVault/NeuroVault/issues/135","id":57368223,"number":135,"title":"Microanatomical Assignments by Maximum Probability Map Atlas from Jülich","user":{"login":"banilo","id":3907396,"avatar_url":"https://avatars.githubusercontent.com/u/3907396?v=3","gravatar_id":"","url":"https://api.github.com/users/banilo","html_url":"https://github.com/banilo","followers_url":"https://api.github.com/users/banilo/followers","following_url":"https://api.github.com/users/banilo/following{/other_user}","gists_url":"https://api.github.com/users/banilo/gists{/gist_id}","starred_url":"https://api.github.com/users/banilo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/banilo/subscriptions","organizations_url":"https://api.github.com/users/banilo/orgs","repos_url":"https://api.github.com/users/banilo/repos","events_url":"https://api.github.com/users/banilo/events{/privacy}","received_events_url":"https://api.github.com/users/banilo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-02-11T19:55:01Z","updated_at":"2015-02-11T21:13:00Z","closed_at":null,"body":"@chrisfilo I know we briefly talked about it, but I think it would still be great to include the cytoarchitectonic probability maps as anatomical labels in NeuroVault.\r\n\r\nThe USPs comparing to other atlases (WFU Pick, AAL, etc.) are\r\n* There is a measure of inter-individual variability\r\n* The maps are based on >10 years of microscopical work\r\n\r\nPractically speaking, everything needed to implement label assignments is readily available in the SPM Anatomy Toolbox.\r\n\r\nWhat do you guys think?"},"comment":{"url":"https://api.github.com/repos/NeuroVault/NeuroVault/issues/comments/73965879","html_url":"https://github.com/NeuroVault/NeuroVault/issues/135#issuecomment-73965879","issue_url":"https://api.github.com/repos/NeuroVault/NeuroVault/issues/135","id":73965879,"user":{"login":"chrisfilo","id":238759,"avatar_url":"https://avatars.githubusercontent.com/u/238759?v=3","gravatar_id":"","url":"https://api.github.com/users/chrisfilo","html_url":"https://github.com/chrisfilo","followers_url":"https://api.github.com/users/chrisfilo/followers","following_url":"https://api.github.com/users/chrisfilo/following{/other_user}","gists_url":"https://api.github.com/users/chrisfilo/gists{/gist_id}","starred_url":"https://api.github.com/users/chrisfilo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chrisfilo/subscriptions","organizations_url":"https://api.github.com/users/chrisfilo/orgs","repos_url":"https://api.github.com/users/chrisfilo/repos","events_url":"https://api.github.com/users/chrisfilo/events{/privacy}","received_events_url":"https://api.github.com/users/chrisfilo/received_events","type":"User","site_admin":false},"created_at":"2015-02-11T21:13:00Z","updated_at":"2015-02-11T21:13:00Z","body":"We actually did some work on better support for atlases. We added a feature that recognises FSL style atlases (.nii.gz + .xml) when you upload them (using folder or .zip upload). The atlas get's better rendering, and lists all the labels: (see for example http://neurovault.org/images/1392/). If you do this the atlases can be queried through our API: for example http://neurovault.org/api/atlas_query_voxel/?x=52&y=-50&z=18&atlas=Juelich%20maxprob%20thr25%202mm&collection=J%C3%BClich%20histological%20(cyto-%20and%20myelo-architectonic)%20atlas to get brain region name from coordinates, but also http://neurovault.org/api/atlas_query_region/?atlas=Juelich%20maxprob%20thr25%202mm&collection=J%C3%BClich%20histological%20(cyto-%20and%20myelo-architectonic)%20atlas&region=wm%20optic%20radiation%20l\r\n\r\nAdditional things we can do:\r\n* add missing Julich atlases (should be easy if you have them in FSL format)\r\n* add ability to show label assignments in papaya and pycortex viewers (easier for papaya, harder for pycortex)"}}