{"action":"opened","issue":{"url":"https://api.github.com/repos/pachterlab/kallisto/issues/57","labels_url":"https://api.github.com/repos/pachterlab/kallisto/issues/57/labels{/name}","comments_url":"https://api.github.com/repos/pachterlab/kallisto/issues/57/comments","events_url":"https://api.github.com/repos/pachterlab/kallisto/issues/57/events","html_url":"https://github.com/pachterlab/kallisto/issues/57","id":88468573,"number":57,"title":"Fail with Cmake BUILD_TESTING=ON","user":{"login":"eroberson","id":3385297,"avatar_url":"https://avatars.githubusercontent.com/u/3385297?v=3","gravatar_id":"","url":"https://api.github.com/users/eroberson","html_url":"https://github.com/eroberson","followers_url":"https://api.github.com/users/eroberson/followers","following_url":"https://api.github.com/users/eroberson/following{/other_user}","gists_url":"https://api.github.com/users/eroberson/gists{/gist_id}","starred_url":"https://api.github.com/users/eroberson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/eroberson/subscriptions","organizations_url":"https://api.github.com/users/eroberson/orgs","repos_url":"https://api.github.com/users/eroberson/repos","events_url":"https://api.github.com/users/eroberson/events{/privacy}","received_events_url":"https://api.github.com/users/eroberson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-06-15T16:00:13Z","updated_at":"2015-06-15T16:00:13Z","closed_at":null,"body":"## Description of error\r\nPulled source from GitHub. Attempted to build on Ubuntu 12.04.5 LTS. Used the build testing, and the testing did not show errors. However, at the end unittests it claims to not find HDF5, even though it shows HDF5 as found.\r\n\r\n## Recreating the issue\r\n### Command\r\n```bash\r\ngit clone http://github.com/pachterlab/kallisto\r\ncd kallisto\r\nmkdir build\r\ncd build\r\ncmake -DBUILD_TESTING=ON ..\r\n```\r\n### Output\r\n```bash\r\n-- The C compiler identification is GNU 5.1.0\r\n-- The CXX compiler identification is GNU 5.1.0\r\n-- Check for working C compiler: /home/eli/bin/gcc_out/bin/gcc\r\n-- Check for working C compiler: /home/eli/bin/gcc_out/bin/gcc -- works\r\n-- Detecting C compiler ABI info\r\n-- Detecting C compiler ABI info - done\r\n-- Detecting C compile features\r\n-- Detecting C compile features - done\r\n-- Check for working CXX compiler: /home/eli/bin/gcc_out/bin/c++\r\n-- Check for working CXX compiler: /home/eli/bin/gcc_out/bin/c++ -- works\r\n-- Detecting CXX compiler ABI info\r\n-- Detecting CXX compiler ABI info - done\r\n-- Detecting CXX compile features\r\n-- Detecting CXX compile features - done\r\nshared build\r\n-- Looking for include file pthread.h\r\n-- Looking for include file pthread.h - found\r\n-- Looking for pthread_create\r\n-- Looking for pthread_create - not found\r\n-- Looking for pthread_create in pthreads\r\n-- Looking for pthread_create in pthreads - not found\r\n-- Looking for pthread_create in pthread\r\n-- Looking for pthread_create in pthread - found\r\n-- Found Threads: TRUE\r\n-- Found HDF5: /home/eli/src/hdf5-1.8.15-patch1/hdf5/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so\r\n-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version \"1.2.3.4\")\r\n-- Found Git: /usr/bin/git (found version \"1.7.9.5\")\r\nCMake Error at unit_tests/CMakeLists.txt:22 (message):\r\n  HDF5 not found.  Required to output files\r\n```\r\n## System details\r\nUbuntu 12.04.5 LTS\r\ncmake v3.2.3\r\ngcc v5.1.0\r\nhdf5 v1.8.15-patch1\r\n\r\nAttempted to download the precompiled Ubuntu binary, but the link appears to be dead. Unsure what is triggering the error, as HDF5 is listed as found right before the unittest says it can't be found."}}