{"action":"created","issue":{"url":"https://api.github.com/repos/philliplab/MotifBinner/issues/67","labels_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/67/labels{/name}","comments_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/67/comments","events_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/67/events","html_url":"https://github.com/philliplab/MotifBinner/issues/67","id":62620907,"number":67,"title":"Design output format for process_bin that includes lets of meta-data","user":{"login":"philliplab","id":5589145,"avatar_url":"https://avatars.githubusercontent.com/u/5589145?v=3","gravatar_id":"","url":"https://api.github.com/users/philliplab","html_url":"https://github.com/philliplab","followers_url":"https://api.github.com/users/philliplab/followers","following_url":"https://api.github.com/users/philliplab/following{/other_user}","gists_url":"https://api.github.com/users/philliplab/gists{/gist_id}","starred_url":"https://api.github.com/users/philliplab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/philliplab/subscriptions","organizations_url":"https://api.github.com/users/philliplab/orgs","repos_url":"https://api.github.com/users/philliplab/repos","events_url":"https://api.github.com/users/philliplab/events{/privacy}","received_events_url":"https://api.github.com/users/philliplab/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/philliplab/MotifBinner/labels/2%20-%20Doing","name":"2 - Doing","color":"009800"}],"state":"open","locked":false,"assignee":{"login":"philliplab","id":5589145,"avatar_url":"https://avatars.githubusercontent.com/u/5589145?v=3","gravatar_id":"","url":"https://api.github.com/users/philliplab","html_url":"https://github.com/philliplab","followers_url":"https://api.github.com/users/philliplab/followers","following_url":"https://api.github.com/users/philliplab/following{/other_user}","gists_url":"https://api.github.com/users/philliplab/gists{/gist_id}","starred_url":"https://api.github.com/users/philliplab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/philliplab/subscriptions","organizations_url":"https://api.github.com/users/philliplab/orgs","repos_url":"https://api.github.com/users/philliplab/repos","events_url":"https://api.github.com/users/philliplab/events{/privacy}","received_events_url":"https://api.github.com/users/philliplab/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/philliplab/MotifBinner/milestones/3","html_url":"https://github.com/philliplab/MotifBinner/milestones/Reporting","labels_url":"https://api.github.com/repos/philliplab/MotifBinner/milestones/3/labels","id":1007381,"number":3,"title":"Reporting","description":"Statistics must be reported for each run. There must be quick glance summary statistics as well as detailed statistics for troubleshooting","creator":{"login":"philliplab","id":5589145,"avatar_url":"https://avatars.githubusercontent.com/u/5589145?v=3","gravatar_id":"","url":"https://api.github.com/users/philliplab","html_url":"https://github.com/philliplab","followers_url":"https://api.github.com/users/philliplab/followers","following_url":"https://api.github.com/users/philliplab/following{/other_user}","gists_url":"https://api.github.com/users/philliplab/gists{/gist_id}","starred_url":"https://api.github.com/users/philliplab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/philliplab/subscriptions","organizations_url":"https://api.github.com/users/philliplab/orgs","repos_url":"https://api.github.com/users/philliplab/repos","events_url":"https://api.github.com/users/philliplab/events{/privacy}","received_events_url":"https://api.github.com/users/philliplab/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":0,"state":"open","created_at":"2015-03-05T11:51:42Z","updated_at":"2015-03-18T08:22:27Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2015-03-18T08:12:31Z","updated_at":"2015-03-18T08:41:14Z","closed_at":null,"body":"Process bin must provide additional output that can be used to report on the binning process.\n\nWhy is this tricky?\n- Not all mislabel classifiers produces distance matrices for example\n- The distance matrices are quite large\n- The report for the outlier classification step has not been designed.\n\nFirst design the report/analysis, then look at how to pass through the required data\n\n<!---\n@huboard:{\"order\":67.0,\"milestone_order\":67,\"custom_state\":\"\"}\n-->\n"},"comment":{"url":"https://api.github.com/repos/philliplab/MotifBinner/issues/comments/82822225","html_url":"https://github.com/philliplab/MotifBinner/issues/67#issuecomment-82822225","issue_url":"https://api.github.com/repos/philliplab/MotifBinner/issues/67","id":82822225,"user":{"login":"philliplab","id":5589145,"avatar_url":"https://avatars.githubusercontent.com/u/5589145?v=3","gravatar_id":"","url":"https://api.github.com/users/philliplab","html_url":"https://github.com/philliplab","followers_url":"https://api.github.com/users/philliplab/followers","following_url":"https://api.github.com/users/philliplab/following{/other_user}","gists_url":"https://api.github.com/users/philliplab/gists{/gist_id}","starred_url":"https://api.github.com/users/philliplab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/philliplab/subscriptions","organizations_url":"https://api.github.com/users/philliplab/orgs","repos_url":"https://api.github.com/users/philliplab/repos","events_url":"https://api.github.com/users/philliplab/events{/privacy}","received_events_url":"https://api.github.com/users/philliplab/received_events","type":"User","site_admin":false},"created_at":"2015-03-18T08:41:14Z","updated_at":"2015-03-18T08:41:14Z","body":"For each bin we need to report:\n1) input sequences\n2) src sequence\n3) out sequences\n4) distance matrix\n5) have an easy way to get to the distance matrices of the kept and discarded sequences\n6) the total number of gaps introduced by the aligner\n7) the number of mismatches per position in the aligned sequences. x positions with 100% consensus, x positions with 95% consensus etc\n8) The number of ambiguity characters in the produced consensus sequences"}}