{"action":"created","issue":{"url":"https://api.github.com/repos/openworm/CElegansNeuroML/issues/27","labels_url":"https://api.github.com/repos/openworm/CElegansNeuroML/issues/27/labels{/name}","comments_url":"https://api.github.com/repos/openworm/CElegansNeuroML/issues/27/comments","events_url":"https://api.github.com/repos/openworm/CElegansNeuroML/issues/27/events","html_url":"https://github.com/openworm/CElegansNeuroML/issues/27","id":88826884,"number":27,"title":"Adapt current data loading process in c302.py to pull data from PyOpenWorm","user":{"login":"travs","id":7369273,"avatar_url":"https://avatars.githubusercontent.com/u/7369273?v=3","gravatar_id":"","url":"https://api.github.com/users/travs","html_url":"https://github.com/travs","followers_url":"https://api.github.com/users/travs/followers","following_url":"https://api.github.com/users/travs/following{/other_user}","gists_url":"https://api.github.com/users/travs/gists{/gist_id}","starred_url":"https://api.github.com/users/travs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/travs/subscriptions","organizations_url":"https://api.github.com/users/travs/orgs","repos_url":"https://api.github.com/users/travs/repos","events_url":"https://api.github.com/users/travs/events{/privacy}","received_events_url":"https://api.github.com/users/travs/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/openworm/CElegansNeuroML/labels/c302","name":"c302","color":"5319e7"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/openworm/CElegansNeuroML/milestones/2","html_url":"https://github.com/openworm/CElegansNeuroML/milestones/Make%20PyOpenWorm%20be%20the%20only%20data%20source%20for%20c302%20structure","labels_url":"https://api.github.com/repos/openworm/CElegansNeuroML/milestones/2/labels","id":1167442,"number":2,"title":"Make PyOpenWorm be the only data source for c302 structure","description":"When all data used in c302 is verifiably being pulled from PyOpenWorm, this milestone is complete. \r\n\r\nThis data includes:\r\n- [ ] Connectivity pattern\r\n- [ ] Neurotransmitters\r\n- [ ] Synaptic weights\r\n- [ ] Neuron names\r\n\r\nAlong with:\r\n- [ ] Tests verifying that the resulting NeuroML2 matches data from PyOpenWorm\r\n","creator":{"login":"travs","id":7369273,"avatar_url":"https://avatars.githubusercontent.com/u/7369273?v=3","gravatar_id":"","url":"https://api.github.com/users/travs","html_url":"https://github.com/travs","followers_url":"https://api.github.com/users/travs/followers","following_url":"https://api.github.com/users/travs/following{/other_user}","gists_url":"https://api.github.com/users/travs/gists{/gist_id}","starred_url":"https://api.github.com/users/travs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/travs/subscriptions","organizations_url":"https://api.github.com/users/travs/orgs","repos_url":"https://api.github.com/users/travs/repos","events_url":"https://api.github.com/users/travs/events{/privacy}","received_events_url":"https://api.github.com/users/travs/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":0,"state":"open","created_at":"2015-06-16T19:58:58Z","updated_at":"2015-06-16T20:18:43Z","due_on":"2015-08-24T02:30:00Z","closed_at":null},"comments":1,"created_at":"2015-06-16T20:03:47Z","updated_at":"2015-06-21T16:56:46Z","closed_at":null,"body":"This data includes:\n- [ ] Connectivity pattern\n- [ ] Neurotransmitters\n- [ ] Synaptic weights\n- [ ] Neuron names\n\nThere was a start on this in #11 #12, but these are a bit out of date."},"comment":{"url":"https://api.github.com/repos/openworm/CElegansNeuroML/issues/comments/113927894","html_url":"https://github.com/openworm/CElegansNeuroML/issues/27#issuecomment-113927894","issue_url":"https://api.github.com/repos/openworm/CElegansNeuroML/issues/27","id":113927894,"user":{"login":"pgleeson","id":1556687,"avatar_url":"https://avatars.githubusercontent.com/u/1556687?v=3","gravatar_id":"","url":"https://api.github.com/users/pgleeson","html_url":"https://github.com/pgleeson","followers_url":"https://api.github.com/users/pgleeson/followers","following_url":"https://api.github.com/users/pgleeson/following{/other_user}","gists_url":"https://api.github.com/users/pgleeson/gists{/gist_id}","starred_url":"https://api.github.com/users/pgleeson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pgleeson/subscriptions","organizations_url":"https://api.github.com/users/pgleeson/orgs","repos_url":"https://api.github.com/users/pgleeson/repos","events_url":"https://api.github.com/users/pgleeson/events{/privacy}","received_events_url":"https://api.github.com/users/pgleeson/received_events","type":"User","site_admin":false},"created_at":"2015-06-21T16:56:46Z","updated_at":"2015-06-21T16:56:46Z","body":"It would certainly be possible to start work on a PyOpenWormReader equivalent of [SpreadsheetDataReader.py](https://github.com/openworm/CElegansNeuroML/blob/master/CElegans/pythonScripts/SpreadsheetDataReader.py) now. Note that openworm/PyOpenWorm#152 would have to be solved before this would be replaced in c302 though. Then the neurons, (muscles), conns returned from readXFromSpreadsheet & readXFromPyOpenWorm could easily be compared.\r\n\r\nUnfortunately the pull requests on #11 #12 are long out of date with the current version of the code so are probably best closed (thanks for your work with these @mwatts15). https://github.com/mwatts15/CElegansNeuroML/blob/master/CElegans/pythonScripts/OpenWormReader.py could be reused though...\r\n\r\n@ahrasheed"}}