{"action":"opened","number":670,"pull_request":{"url":"https://api.github.com/repos/bigdatagenomics/adam/pulls/670","id":34594706,"html_url":"https://github.com/bigdatagenomics/adam/pull/670","diff_url":"https://github.com/bigdatagenomics/adam/pull/670.diff","patch_url":"https://github.com/bigdatagenomics/adam/pull/670.patch","issue_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/670","number":670,"state":"open","locked":false,"title":"kill Job arg to ADAMSparkCommand","user":{"login":"ryan-williams","id":465045,"avatar_url":"https://avatars.githubusercontent.com/u/465045?v=3","gravatar_id":"","url":"https://api.github.com/users/ryan-williams","html_url":"https://github.com/ryan-williams","followers_url":"https://api.github.com/users/ryan-williams/followers","following_url":"https://api.github.com/users/ryan-williams/following{/other_user}","gists_url":"https://api.github.com/users/ryan-williams/gists{/gist_id}","starred_url":"https://api.github.com/users/ryan-williams/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ryan-williams/subscriptions","organizations_url":"https://api.github.com/users/ryan-williams/orgs","repos_url":"https://api.github.com/users/ryan-williams/repos","events_url":"https://api.github.com/users/ryan-williams/events{/privacy}","received_events_url":"https://api.github.com/users/ryan-williams/received_events","type":"User","site_admin":false},"body":"Working plan is that this will not be merged as these changes will make their way in to #664 via [fnothaft/adam#5](https://github.com/fnothaft/adam/pull/5), but since I made this anyway to try to do some testing without biting off the entire `utils-0.2.1` upgrade, here it is for now.\r\n\r\nfixes #662","created_at":"2015-05-03T01:17:57Z","updated_at":"2015-05-03T01:17:57Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/bigdatagenomics/adam/pulls/670/commits","review_comments_url":"https://api.github.com/repos/bigdatagenomics/adam/pulls/670/comments","review_comment_url":"https://api.github.com/repos/bigdatagenomics/adam/pulls/comments{/number}","comments_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/670/comments","statuses_url":"https://api.github.com/repos/bigdatagenomics/adam/statuses/fa48c93507822627bfd5b459a7a0fd719cbd1cef","head":{"label":"ryan-williams:job","ref":"job","sha":"fa48c93507822627bfd5b459a7a0fd719cbd1cef","user":{"login":"ryan-williams","id":465045,"avatar_url":"https://avatars.githubusercontent.com/u/465045?v=3","gravatar_id":"","url":"https://api.github.com/users/ryan-williams","html_url":"https://github.com/ryan-williams","followers_url":"https://api.github.com/users/ryan-williams/followers","following_url":"https://api.github.com/users/ryan-williams/following{/other_user}","gists_url":"https://api.github.com/users/ryan-williams/gists{/gist_id}","starred_url":"https://api.github.com/users/ryan-williams/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ryan-williams/subscriptions","organizations_url":"https://api.github.com/users/ryan-williams/orgs","repos_url":"https://api.github.com/users/ryan-williams/repos","events_url":"https://api.github.com/users/ryan-williams/events{/privacy}","received_events_url":"https://api.github.com/users/ryan-williams/received_events","type":"User","site_admin":false},"repo":{"id":22968308,"name":"adam","full_name":"ryan-williams/adam","owner":{"login":"ryan-williams","id":465045,"avatar_url":"https://avatars.githubusercontent.com/u/465045?v=3","gravatar_id":"","url":"https://api.github.com/users/ryan-williams","html_url":"https://github.com/ryan-williams","followers_url":"https://api.github.com/users/ryan-williams/followers","following_url":"https://api.github.com/users/ryan-williams/following{/other_user}","gists_url":"https://api.github.com/users/ryan-williams/gists{/gist_id}","starred_url":"https://api.github.com/users/ryan-williams/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ryan-williams/subscriptions","organizations_url":"https://api.github.com/users/ryan-williams/orgs","repos_url":"https://api.github.com/users/ryan-williams/repos","events_url":"https://api.github.com/users/ryan-williams/events{/privacy}","received_events_url":"https://api.github.com/users/ryan-williams/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/ryan-williams/adam","description":"A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.","fork":true,"url":"https://api.github.com/repos/ryan-williams/adam","forks_url":"https://api.github.com/repos/ryan-williams/adam/forks","keys_url":"https://api.github.com/repos/ryan-williams/adam/keys{/key_id}","collaborators_url":"https://api.github.com/repos/ryan-williams/adam/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/ryan-williams/adam/teams","hooks_url":"https://api.github.com/repos/ryan-williams/adam/hooks","issue_events_url":"https://api.github.com/repos/ryan-williams/adam/issues/events{/number}","events_url":"https://api.github.com/repos/ryan-williams/adam/events","assignees_url":"https://api.github.com/repos/ryan-williams/adam/assignees{/user}","branches_url":"https://api.github.com/repos/ryan-williams/adam/branches{/branch}","tags_url":"https://api.github.com/repos/ryan-williams/adam/tags","blobs_url":"https://api.github.com/repos/ryan-williams/adam/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/ryan-williams/adam/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/ryan-williams/adam/git/refs{/sha}","trees_url":"https://api.github.com/repos/ryan-williams/adam/git/trees{/sha}","statuses_url":"https://api.github.com/repos/ryan-williams/adam/statuses/{sha}","languages_url":"https://api.github.com/repos/ryan-williams/adam/languages","stargazers_url":"https://api.github.com/repos/ryan-williams/adam/stargazers","contributors_url":"https://api.github.com/repos/ryan-williams/adam/contributors","subscribers_url":"https://api.github.com/repos/ryan-williams/adam/subscribers","subscription_url":"https://api.github.com/repos/ryan-williams/adam/subscription","commits_url":"https://api.github.com/repos/ryan-williams/adam/commits{/sha}","git_commits_url":"https://api.github.com/repos/ryan-williams/adam/git/commits{/sha}","comments_url":"https://api.github.com/repos/ryan-williams/adam/comments{/number}","issue_comment_url":"https://api.github.com/repos/ryan-williams/adam/issues/comments{/number}","contents_url":"https://api.github.com/repos/ryan-williams/adam/contents/{+path}","compare_url":"https://api.github.com/repos/ryan-williams/adam/compare/{base}...{head}","merges_url":"https://api.github.com/repos/ryan-williams/adam/merges","archive_url":"https://api.github.com/repos/ryan-williams/adam/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/ryan-williams/adam/downloads","issues_url":"https://api.github.com/repos/ryan-williams/adam/issues{/number}","pulls_url":"https://api.github.com/repos/ryan-williams/adam/pulls{/number}","milestones_url":"https://api.github.com/repos/ryan-williams/adam/milestones{/number}","notifications_url":"https://api.github.com/repos/ryan-williams/adam/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/ryan-williams/adam/labels{/name}","releases_url":"https://api.github.com/repos/ryan-williams/adam/releases{/id}","created_at":"2014-08-14T20:53:48Z","updated_at":"2014-08-13T04:49:00Z","pushed_at":"2015-05-03T01:16:04Z","git_url":"git://github.com/ryan-williams/adam.git","ssh_url":"git@github.com:ryan-williams/adam.git","clone_url":"https://github.com/ryan-williams/adam.git","svn_url":"https://github.com/ryan-williams/adam","homepage":"http://bdgenomics.org/","size":4195,"stargazers_count":0,"watchers_count":0,"language":null,"has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"master"}},"base":{"label":"bigdatagenomics:master","ref":"master","sha":"b2ca4942bda3ebb6e8bd10777ae8e6a4c2313a3e","user":{"login":"bigdatagenomics","id":5839438,"avatar_url":"https://avatars.githubusercontent.com/u/5839438?v=3","gravatar_id":"","url":"https://api.github.com/users/bigdatagenomics","html_url":"https://github.com/bigdatagenomics","followers_url":"https://api.github.com/users/bigdatagenomics/followers","following_url":"https://api.github.com/users/bigdatagenomics/following{/other_user}","gists_url":"https://api.github.com/users/bigdatagenomics/gists{/gist_id}","starred_url":"https://api.github.com/users/bigdatagenomics/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bigdatagenomics/subscriptions","organizations_url":"https://api.github.com/users/bigdatagenomics/orgs","repos_url":"https://api.github.com/users/bigdatagenomics/repos","events_url":"https://api.github.com/users/bigdatagenomics/events{/privacy}","received_events_url":"https://api.github.com/users/bigdatagenomics/received_events","type":"Organization","site_admin":false},"repo":{"id":14541530,"name":"adam","full_name":"bigdatagenomics/adam","owner":{"login":"bigdatagenomics","id":5839438,"avatar_url":"https://avatars.githubusercontent.com/u/5839438?v=3","gravatar_id":"","url":"https://api.github.com/users/bigdatagenomics","html_url":"https://github.com/bigdatagenomics","followers_url":"https://api.github.com/users/bigdatagenomics/followers","following_url":"https://api.github.com/users/bigdatagenomics/following{/other_user}","gists_url":"https://api.github.com/users/bigdatagenomics/gists{/gist_id}","starred_url":"https://api.github.com/users/bigdatagenomics/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bigdatagenomics/subscriptions","organizations_url":"https://api.github.com/users/bigdatagenomics/orgs","repos_url":"https://api.github.com/users/bigdatagenomics/repos","events_url":"https://api.github.com/users/bigdatagenomics/events{/privacy}","received_events_url":"https://api.github.com/users/bigdatagenomics/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/bigdatagenomics/adam","description":"A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.","fork":false,"url":"https://api.github.com/repos/bigdatagenomics/adam","forks_url":"https://api.github.com/repos/bigdatagenomics/adam/forks","keys_url":"https://api.github.com/repos/bigdatagenomics/adam/keys{/key_id}","collaborators_url":"https://api.github.com/repos/bigdatagenomics/adam/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/bigdatagenomics/adam/teams","hooks_url":"https://api.github.com/repos/bigdatagenomics/adam/hooks","issue_events_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/events{/number}","events_url":"https://api.github.com/repos/bigdatagenomics/adam/events","assignees_url":"https://api.github.com/repos/bigdatagenomics/adam/assignees{/user}","branches_url":"https://api.github.com/repos/bigdatagenomics/adam/branches{/branch}","tags_url":"https://api.github.com/repos/bigdatagenomics/adam/tags","blobs_url":"https://api.github.com/repos/bigdatagenomics/adam/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/bigdatagenomics/adam/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/bigdatagenomics/adam/git/refs{/sha}","trees_url":"https://api.github.com/repos/bigdatagenomics/adam/git/trees{/sha}","statuses_url":"https://api.github.com/repos/bigdatagenomics/adam/statuses/{sha}","languages_url":"https://api.github.com/repos/bigdatagenomics/adam/languages","stargazers_url":"https://api.github.com/repos/bigdatagenomics/adam/stargazers","contributors_url":"https://api.github.com/repos/bigdatagenomics/adam/contributors","subscribers_url":"https://api.github.com/repos/bigdatagenomics/adam/subscribers","subscription_url":"https://api.github.com/repos/bigdatagenomics/adam/subscription","commits_url":"https://api.github.com/repos/bigdatagenomics/adam/commits{/sha}","git_commits_url":"https://api.github.com/repos/bigdatagenomics/adam/git/commits{/sha}","comments_url":"https://api.github.com/repos/bigdatagenomics/adam/comments{/number}","issue_comment_url":"https://api.github.com/repos/bigdatagenomics/adam/issues/comments{/number}","contents_url":"https://api.github.com/repos/bigdatagenomics/adam/contents/{+path}","compare_url":"https://api.github.com/repos/bigdatagenomics/adam/compare/{base}...{head}","merges_url":"https://api.github.com/repos/bigdatagenomics/adam/merges","archive_url":"https://api.github.com/repos/bigdatagenomics/adam/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/bigdatagenomics/adam/downloads","issues_url":"https://api.github.com/repos/bigdatagenomics/adam/issues{/number}","pulls_url":"https://api.github.com/repos/bigdatagenomics/adam/pulls{/number}","milestones_url":"https://api.github.com/repos/bigdatagenomics/adam/milestones{/number}","notifications_url":"https://api.github.com/repos/bigdatagenomics/adam/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/bigdatagenomics/adam/labels{/name}","releases_url":"https://api.github.com/repos/bigdatagenomics/adam/releases{/id}","created_at":"2013-11-19T23:47:57Z","updated_at":"2015-05-01T22:30:07Z","pushed_at":"2015-05-03T00:15:36Z","git_url":"git://github.com/bigdatagenomics/adam.git","ssh_url":"git@github.com:bigdatagenomics/adam.git","clone_url":"https://github.com/bigdatagenomics/adam.git","svn_url":"https://github.com/bigdatagenomics/adam","homepage":"http://bdgenomics.org/","size":56472,"stargazers_count":264,"watchers_count":264,"language":"Scala","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":100,"mirror_url":null,"open_issues_count":95,"forks":100,"open_issues":95,"watchers":264,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/bigdatagenomics/adam/pulls/670"},"html":{"href":"https://github.com/bigdatagenomics/adam/pull/670"},"issue":{"href":"https://api.github.com/repos/bigdatagenomics/adam/issues/670"},"comments":{"href":"https://api.github.com/repos/bigdatagenomics/adam/issues/670/comments"},"review_comments":{"href":"https://api.github.com/repos/bigdatagenomics/adam/pulls/670/comments"},"review_comment":{"href":"https://api.github.com/repos/bigdatagenomics/adam/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/bigdatagenomics/adam/pulls/670/commits"},"statuses":{"href":"https://api.github.com/repos/bigdatagenomics/adam/statuses/fa48c93507822627bfd5b459a7a0fd719cbd1cef"}},"merged":false,"mergeable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"commits":1,"additions":37,"deletions":49,"changed_files":24}}