{"push_id":863255024,"size":1,"distinct_size":1,"ref":"refs/heads/master","head":"28dc0af969b9a653ed84a64278fcbcf9badeae03","before":"af2d02dc0f32d63d7deba437d3b40681281f2185","commits":[{"sha":"28dc0af969b9a653ed84a64278fcbcf9badeae03","author":{"email":"482d2b655b040ec1e5e6a49aee8294b5f3441a0d@yale.edu","name":"Rob Kitchen"},"message":"More adapter ID and random barcode updates, and bowtie-quals flag fix\n\nMakefile:\n- updated exceRpt_Tools.jar to include the latest adapter\nidentification code in Thunder.  Suppresses 3’ adapter alignments that\nextend upstream of the 5’ end of the read\n- updated flags to fast_clipper for samples with random barcodes.  Now\nany reads that have NOT been clipped of their 3’ adapter are REMOVED as\nwe cannot guarantee the position of the *N random barcode\n- fixed typo in bowtie phred quals flag that was causing consistent\nproblems","distinct":true,"url":"https://api.github.com/repos/gersteinlab/exceRpt/commits/28dc0af969b9a653ed84a64278fcbcf9badeae03"}]}