{"push_id":726618981,"size":1,"distinct_size":1,"ref":"refs/heads/da_read_pipeline","head":"2822d536a734804f33a18a8d3989381e811f0298","before":"37c7ccb7d4959de2c94d1df03447d764c258d260","commits":[{"sha":"2822d536a734804f33a18a8d3989381e811f0298","author":{"email":"eb2ff7e9da6be553269aef996dd6d1d520e0c477@google.com","name":"David Adams"},"message":"Adding coders and switching to our UUID solution for determinism.\n\nMore UUID stuff.\n\nAdding more tests and Mockito.\n\nRoughly finished up testing and a little cleanup.\n\nA few more changes to the overall pipeline.\n\nAdding something for DavidR :)\n\nTest clean up.\n\nMigrate code to new read interface\n\nCleaning up tests after rebase.\n\nSource and test clean up.\n\nA few more changes..\n\nConflicts:\n\tbuild.gradle\n\tsrc/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java\n\nConflicts:\n\tsrc/main/java/org/broadinstitute/hellbender/dev/tools/walkers/bqsr/BaseRecalibratorDataflow.java\n\tsrc/main/java/org/broadinstitute/hellbender/engine/dataflow/coders/VariantCoder.java\n\tsrc/main/java/org/broadinstitute/hellbender/engine/dataflow/transforms/GoogleGenomicsReadToGATKRead.java\n\tsrc/main/java/org/broadinstitute/hellbender/tools/dataflow/pipelines/DataflowReadsPipeline.java\n\tsrc/main/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtils.java\n\tsrc/main/java/org/broadinstitute/hellbender/utils/read/ArtificialReadUtils.java\n\tsrc/test/java/org/broadinstitute/hellbender/engine/dataflow/ReadsDataflowSourceTest.java\n\tsrc/test/java/org/broadinstitute/hellbender/tools/dataflow/transforms/CountBasesTransformUnitTest.java\n\tsrc/test/java/org/broadinstitute/hellbender/tools/dataflow/transforms/PrintReadsTransformUnitTest.java\n\tsrc/test/java/org/broadinstitute/hellbender/utils/dataflow/DataflowUtilsUnitTest.java","distinct":true,"url":"https://api.github.com/repos/broadinstitute/hellbender/commits/2822d536a734804f33a18a8d3989381e811f0298"}]}