{"action":"created","issue":{"url":"https://api.github.com/repos/genenetwork/genenetwork/issues/14","labels_url":"https://api.github.com/repos/genenetwork/genenetwork/issues/14/labels{/name}","comments_url":"https://api.github.com/repos/genenetwork/genenetwork/issues/14/comments","events_url":"https://api.github.com/repos/genenetwork/genenetwork/issues/14/events","html_url":"https://github.com/genenetwork/genenetwork/issues/14","id":96341682,"number":14,"title":"about link rot","user":{"login":"lyan6","id":10780099,"avatar_url":"https://avatars.githubusercontent.com/u/10780099?v=3","gravatar_id":"","url":"https://api.github.com/users/lyan6","html_url":"https://github.com/lyan6","followers_url":"https://api.github.com/users/lyan6/followers","following_url":"https://api.github.com/users/lyan6/following{/other_user}","gists_url":"https://api.github.com/users/lyan6/gists{/gist_id}","starred_url":"https://api.github.com/users/lyan6/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lyan6/subscriptions","organizations_url":"https://api.github.com/users/lyan6/orgs","repos_url":"https://api.github.com/users/lyan6/repos","events_url":"https://api.github.com/users/lyan6/events{/privacy}","received_events_url":"https://api.github.com/users/lyan6/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-07-21T15:10:00Z","updated_at":"2015-07-21T16:18:47Z","closed_at":null,"body":"[From Rob email]\r\n\r\nWe have a bit of \"link rot\" to fix in GN1. Link rot means that our external links from GN1 stop working properly (they have rotten or rusted).\r\n\r\nHere is an example for the gene symbol Cyp2c44:\r\n\r\n\r\nInline image 1\r\n\r\nGene:  This link works great\r\nHomoloGene: works great\r\nUSCS: works well, but link might be better if it went straight to the gene map like this:\r\n\r\nhttp://genome.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9&position=chr19%3A44079512-44103737&hgsid=435526141_Ax12Q5pBVNZYJ6JfBHu7I6TL2NcX\r\n\r\nBioGPS: works great\r\nSTRING:  Link rot\r\nShould go to new page for CYP2C44. I'm not sure that the URL should be any more. But STRING is great and we should like\r\n\r\nPANTHER:  Link rot\r\nShould go to http://www.pantherdb.org/genes/geneList.do?searchType=basic&fieldName=all&organism=all&listType=1&fieldValue=cyp2c44\r\n\r\nGemma:  works great\r\n\r\nSynDB:  We should remove this link. It is only good for a small number of genes (that associated with the synapses of neurons). Could replace with \r\n\r\nTwo New Links TO ADD:\r\n\r\nEBI GWAS:  with this type of search URL https://www.ebi.ac.uk/gwas/search?query=got1\r\nwhere the query term is the gene symbol \"got1\" in this case\r\n\r\nGeneMania: http://www.genemania.org\r\nHere you need to provide the species and the gene symbol. Not sure how to do this. They have five species that we also have (Arabidopsis, human, rat, mouse, and Drosophila)"},"comment":{"url":"https://api.github.com/repos/genenetwork/genenetwork/issues/comments/123390362","html_url":"https://github.com/genenetwork/genenetwork/issues/14#issuecomment-123390362","issue_url":"https://api.github.com/repos/genenetwork/genenetwork/issues/14","id":123390362,"user":{"login":"lyan6","id":10780099,"avatar_url":"https://avatars.githubusercontent.com/u/10780099?v=3","gravatar_id":"","url":"https://api.github.com/users/lyan6","html_url":"https://github.com/lyan6","followers_url":"https://api.github.com/users/lyan6/followers","following_url":"https://api.github.com/users/lyan6/following{/other_user}","gists_url":"https://api.github.com/users/lyan6/gists{/gist_id}","starred_url":"https://api.github.com/users/lyan6/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lyan6/subscriptions","organizations_url":"https://api.github.com/users/lyan6/orgs","repos_url":"https://api.github.com/users/lyan6/repos","events_url":"https://api.github.com/users/lyan6/events{/privacy}","received_events_url":"https://api.github.com/users/lyan6/received_events","type":"User","site_admin":false},"created_at":"2015-07-21T16:18:47Z","updated_at":"2015-07-21T16:18:47Z","body":"test"}}