{"action":"created","issue":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1975","labels_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1975/labels{/name}","comments_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1975/comments","events_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1975/events","html_url":"https://github.com/Homebrew/homebrew-science/issues/1975","id":62282439,"number":1975,"title":"allpaths-lg on OS X 10.10.2 (installation error)","user":{"login":"kim612","id":861202,"avatar_url":"https://avatars.githubusercontent.com/u/861202?v=3","gravatar_id":"","url":"https://api.github.com/users/kim612","html_url":"https://github.com/kim612","followers_url":"https://api.github.com/users/kim612/followers","following_url":"https://api.github.com/users/kim612/following{/other_user}","gists_url":"https://api.github.com/users/kim612/gists{/gist_id}","starred_url":"https://api.github.com/users/kim612/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kim612/subscriptions","organizations_url":"https://api.github.com/users/kim612/orgs","repos_url":"https://api.github.com/users/kim612/repos","events_url":"https://api.github.com/users/kim612/events{/privacy}","received_events_url":"https://api.github.com/users/kim612/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-03-17T04:15:34Z","updated_at":"2015-04-06T22:01:00Z","closed_at":null,"body":"Thank you.\r\n\r\ncomputer:~ kim$ brew install allpaths-lg\r\n==> Installing allpaths-lg from homebrew/homebrew-science\r\ncouldn't understand kern.osversion `14.1.0'\r\n==> Downloading ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-50378.tar.gz\r\nAlready downloaded: /Library/Caches/Homebrew/allpaths-lg-50378.tar.gz\r\n==> ./configure --prefix=/usr/local/Cellar/allpaths-lg/50378\r\n==> make install\r\n./kmers/KmerRecord.h:297:1: note: in expansion of macro 'DEFINE_BYTE_PAC_LESS'\r\n DEFINE_BYTE_PAC_LESS(10000)\r\n ^\r\nmake[1]: *** [SupportedHyperBasevector4.o] Error 1\r\nmake: *** [install-recursive] Error 1\r\n\r\nREAD THIS: https://git.io/brew-troubleshooting\r\nIf reporting this issue please do so at (not Homebrew/homebrew):\r\n  https://github.com/homebrew/homebrew-science/issues\r\n\r\ncomputer:~ kim$\r\n\r\nAnd, please check this link too. It was made by \"brew gist-logs allpaths-lg\".\r\nhttps://gist.github.com/e3e60c17582024294459"},"comment":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/comments/90257799","html_url":"https://github.com/Homebrew/homebrew-science/issues/1975#issuecomment-90257799","issue_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/1975","id":90257799,"user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"created_at":"2015-04-06T22:01:00Z","updated_at":"2015-04-06T22:01:00Z","body":"Mine builds on Linux, but fails on OSX (I have 14.1.10 too). However, it is not the macro error, I get errors with ```cstring```.\r\n\r\n@kim612 as an aside - are you sure you can use allpath-lg? it requires (1) _overlapping_ paired end reads **and** (2) a large mate-pair library. This combination is rare unless you speficially sequenced for it. Try using ```spades``` instead.\r\n"}}