{"action":"opened","number":528,"pull_request":{"url":"https://api.github.com/repos/biopython/biopython/pulls/528","id":33974659,"html_url":"https://github.com/biopython/biopython/pull/528","diff_url":"https://github.com/biopython/biopython/pull/528.diff","patch_url":"https://github.com/biopython/biopython/pull/528.patch","issue_url":"https://api.github.com/repos/biopython/biopython/issues/528","number":528,"state":"open","locked":false,"title":"Per column annotation for AlignIO Stockholm format etc","user":{"login":"peterjc","id":63959,"avatar_url":"https://avatars.githubusercontent.com/u/63959?v=3","gravatar_id":"","url":"https://api.github.com/users/peterjc","html_url":"https://github.com/peterjc","followers_url":"https://api.github.com/users/peterjc/followers","following_url":"https://api.github.com/users/peterjc/following{/other_user}","gists_url":"https://api.github.com/users/peterjc/gists{/gist_id}","starred_url":"https://api.github.com/users/peterjc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterjc/subscriptions","organizations_url":"https://api.github.com/users/peterjc/orgs","repos_url":"https://api.github.com/users/peterjc/repos","events_url":"https://api.github.com/users/peterjc/events{/privacy}","received_events_url":"https://api.github.com/users/peterjc/received_events","type":"User","site_admin":false},"body":"This ought to resolve #516 (per-column annotation) and #357 (Stockholm parser currently ignores per-column annotation).\r\n\r\nRequesting comments please, in particular on the slicing logic (should it preserve per-column annotation even when dropping rows) and naming of Stockholm annotation keys (e.g. should it keep the ``_cons`` suffix?)","created_at":"2015-04-23T16:51:09Z","updated_at":"2015-04-23T16:51:09Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/biopython/biopython/pulls/528/commits","review_comments_url":"https://api.github.com/repos/biopython/biopython/pulls/528/comments","review_comment_url":"https://api.github.com/repos/biopython/biopython/pulls/comments{/number}","comments_url":"https://api.github.com/repos/biopython/biopython/issues/528/comments","statuses_url":"https://api.github.com/repos/biopython/biopython/statuses/b22adef180865cebbc19dd394a03ebad505217d9","head":{"label":"peterjc:per-column-annotation","ref":"per-column-annotation","sha":"b22adef180865cebbc19dd394a03ebad505217d9","user":{"login":"peterjc","id":63959,"avatar_url":"https://avatars.githubusercontent.com/u/63959?v=3","gravatar_id":"","url":"https://api.github.com/users/peterjc","html_url":"https://github.com/peterjc","followers_url":"https://api.github.com/users/peterjc/followers","following_url":"https://api.github.com/users/peterjc/following{/other_user}","gists_url":"https://api.github.com/users/peterjc/gists{/gist_id}","starred_url":"https://api.github.com/users/peterjc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterjc/subscriptions","organizations_url":"https://api.github.com/users/peterjc/orgs","repos_url":"https://api.github.com/users/peterjc/repos","events_url":"https://api.github.com/users/peterjc/events{/privacy}","received_events_url":"https://api.github.com/users/peterjc/received_events","type":"User","site_admin":false},"repo":{"id":155314,"name":"biopython","full_name":"peterjc/biopython","owner":{"login":"peterjc","id":63959,"avatar_url":"https://avatars.githubusercontent.com/u/63959?v=3","gravatar_id":"","url":"https://api.github.com/users/peterjc","html_url":"https://github.com/peterjc","followers_url":"https://api.github.com/users/peterjc/followers","following_url":"https://api.github.com/users/peterjc/following{/other_user}","gists_url":"https://api.github.com/users/peterjc/gists{/gist_id}","starred_url":"https://api.github.com/users/peterjc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/peterjc/subscriptions","organizations_url":"https://api.github.com/users/peterjc/orgs","repos_url":"https://api.github.com/users/peterjc/repos","events_url":"https://api.github.com/users/peterjc/events{/privacy}","received_events_url":"https://api.github.com/users/peterjc/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/peterjc/biopython","description":"My fork of the official Biopython repository, used for experimental branches etc","fork":true,"url":"https://api.github.com/repos/peterjc/biopython","forks_url":"https://api.github.com/repos/peterjc/biopython/forks","keys_url":"https://api.github.com/repos/peterjc/biopython/keys{/key_id}","collaborators_url":"https://api.github.com/repos/peterjc/biopython/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/peterjc/biopython/teams","hooks_url":"https://api.github.com/repos/peterjc/biopython/hooks","issue_events_url":"https://api.github.com/repos/peterjc/biopython/issues/events{/number}","events_url":"https://api.github.com/repos/peterjc/biopython/events","assignees_url":"https://api.github.com/repos/peterjc/biopython/assignees{/user}","branches_url":"https://api.github.com/repos/peterjc/biopython/branches{/branch}","tags_url":"https://api.github.com/repos/peterjc/biopython/tags","blobs_url":"https://api.github.com/repos/peterjc/biopython/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/peterjc/biopython/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/peterjc/biopython/git/refs{/sha}","trees_url":"https://api.github.com/repos/peterjc/biopython/git/trees{/sha}","statuses_url":"https://api.github.com/repos/peterjc/biopython/statuses/{sha}","languages_url":"https://api.github.com/repos/peterjc/biopython/languages","stargazers_url":"https://api.github.com/repos/peterjc/biopython/stargazers","contributors_url":"https://api.github.com/repos/peterjc/biopython/contributors","subscribers_url":"https://api.github.com/repos/peterjc/biopython/subscribers","subscription_url":"https://api.github.com/repos/peterjc/biopython/subscription","commits_url":"https://api.github.com/repos/peterjc/biopython/commits{/sha}","git_commits_url":"https://api.github.com/repos/peterjc/biopython/git/commits{/sha}","comments_url":"https://api.github.com/repos/peterjc/biopython/comments{/number}","issue_comment_url":"https://api.github.com/repos/peterjc/biopython/issues/comments{/number}","contents_url":"https://api.github.com/repos/peterjc/biopython/contents/{+path}","compare_url":"https://api.github.com/repos/peterjc/biopython/compare/{base}...{head}","merges_url":"https://api.github.com/repos/peterjc/biopython/merges","archive_url":"https://api.github.com/repos/peterjc/biopython/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/peterjc/biopython/downloads","issues_url":"https://api.github.com/repos/peterjc/biopython/issues{/number}","pulls_url":"https://api.github.com/repos/peterjc/biopython/pulls{/number}","milestones_url":"https://api.github.com/repos/peterjc/biopython/milestones{/number}","notifications_url":"https://api.github.com/repos/peterjc/biopython/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/peterjc/biopython/labels{/name}","releases_url":"https://api.github.com/repos/peterjc/biopython/releases{/id}","created_at":"2009-03-23T11:43:06Z","updated_at":"2015-04-22T17:18:46Z","pushed_at":"2015-04-23T16:47:00Z","git_url":"git://github.com/peterjc/biopython.git","ssh_url":"git@github.com:peterjc/biopython.git","clone_url":"https://github.com/peterjc/biopython.git","svn_url":"https://github.com/peterjc/biopython","homepage":"http://biopython.org/wiki/GitMigration","size":42439,"stargazers_count":15,"watchers_count":15,"language":"Python","has_issues":false,"has_downloads":false,"has_wiki":false,"has_pages":false,"forks_count":3,"mirror_url":null,"open_issues_count":0,"forks":3,"open_issues":0,"watchers":15,"default_branch":"master"}},"base":{"label":"biopython:master","ref":"master","sha":"ecd4784b0ea7e642ab2cc280a57224834d6d467f","user":{"login":"biopython","id":54555,"avatar_url":"https://avatars.githubusercontent.com/u/54555?v=3","gravatar_id":"","url":"https://api.github.com/users/biopython","html_url":"https://github.com/biopython","followers_url":"https://api.github.com/users/biopython/followers","following_url":"https://api.github.com/users/biopython/following{/other_user}","gists_url":"https://api.github.com/users/biopython/gists{/gist_id}","starred_url":"https://api.github.com/users/biopython/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biopython/subscriptions","organizations_url":"https://api.github.com/users/biopython/orgs","repos_url":"https://api.github.com/users/biopython/repos","events_url":"https://api.github.com/users/biopython/events{/privacy}","received_events_url":"https://api.github.com/users/biopython/received_events","type":"Organization","site_admin":false},"repo":{"id":151541,"name":"biopython","full_name":"biopython/biopython","owner":{"login":"biopython","id":54555,"avatar_url":"https://avatars.githubusercontent.com/u/54555?v=3","gravatar_id":"","url":"https://api.github.com/users/biopython","html_url":"https://github.com/biopython","followers_url":"https://api.github.com/users/biopython/followers","following_url":"https://api.github.com/users/biopython/following{/other_user}","gists_url":"https://api.github.com/users/biopython/gists{/gist_id}","starred_url":"https://api.github.com/users/biopython/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biopython/subscriptions","organizations_url":"https://api.github.com/users/biopython/orgs","repos_url":"https://api.github.com/users/biopython/repos","events_url":"https://api.github.com/users/biopython/events{/privacy}","received_events_url":"https://api.github.com/users/biopython/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/biopython/biopython","description":"Official git repository for Biopython (converted from CVS)","fork":false,"url":"https://api.github.com/repos/biopython/biopython","forks_url":"https://api.github.com/repos/biopython/biopython/forks","keys_url":"https://api.github.com/repos/biopython/biopython/keys{/key_id}","collaborators_url":"https://api.github.com/repos/biopython/biopython/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/biopython/biopython/teams","hooks_url":"https://api.github.com/repos/biopython/biopython/hooks","issue_events_url":"https://api.github.com/repos/biopython/biopython/issues/events{/number}","events_url":"https://api.github.com/repos/biopython/biopython/events","assignees_url":"https://api.github.com/repos/biopython/biopython/assignees{/user}","branches_url":"https://api.github.com/repos/biopython/biopython/branches{/branch}","tags_url":"https://api.github.com/repos/biopython/biopython/tags","blobs_url":"https://api.github.com/repos/biopython/biopython/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/biopython/biopython/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/biopython/biopython/git/refs{/sha}","trees_url":"https://api.github.com/repos/biopython/biopython/git/trees{/sha}","statuses_url":"https://api.github.com/repos/biopython/biopython/statuses/{sha}","languages_url":"https://api.github.com/repos/biopython/biopython/languages","stargazers_url":"https://api.github.com/repos/biopython/biopython/stargazers","contributors_url":"https://api.github.com/repos/biopython/biopython/contributors","subscribers_url":"https://api.github.com/repos/biopython/biopython/subscribers","subscription_url":"https://api.github.com/repos/biopython/biopython/subscription","commits_url":"https://api.github.com/repos/biopython/biopython/commits{/sha}","git_commits_url":"https://api.github.com/repos/biopython/biopython/git/commits{/sha}","comments_url":"https://api.github.com/repos/biopython/biopython/comments{/number}","issue_comment_url":"https://api.github.com/repos/biopython/biopython/issues/comments{/number}","contents_url":"https://api.github.com/repos/biopython/biopython/contents/{+path}","compare_url":"https://api.github.com/repos/biopython/biopython/compare/{base}...{head}","merges_url":"https://api.github.com/repos/biopython/biopython/merges","archive_url":"https://api.github.com/repos/biopython/biopython/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/biopython/biopython/downloads","issues_url":"https://api.github.com/repos/biopython/biopython/issues{/number}","pulls_url":"https://api.github.com/repos/biopython/biopython/pulls{/number}","milestones_url":"https://api.github.com/repos/biopython/biopython/milestones{/number}","notifications_url":"https://api.github.com/repos/biopython/biopython/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/biopython/biopython/labels{/name}","releases_url":"https://api.github.com/repos/biopython/biopython/releases{/id}","created_at":"2009-03-15T21:09:53Z","updated_at":"2015-04-23T16:46:12Z","pushed_at":"2015-04-23T16:46:12Z","git_url":"git://github.com/biopython/biopython.git","ssh_url":"git@github.com:biopython/biopython.git","clone_url":"https://github.com/biopython/biopython.git","svn_url":"https://github.com/biopython/biopython","homepage":"http://biopython.org/","size":51166,"stargazers_count":588,"watchers_count":588,"language":"Python","has_issues":true,"has_downloads":false,"has_wiki":false,"has_pages":false,"forks_count":349,"mirror_url":null,"open_issues_count":96,"forks":349,"open_issues":96,"watchers":588,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/biopython/biopython/pulls/528"},"html":{"href":"https://github.com/biopython/biopython/pull/528"},"issue":{"href":"https://api.github.com/repos/biopython/biopython/issues/528"},"comments":{"href":"https://api.github.com/repos/biopython/biopython/issues/528/comments"},"review_comments":{"href":"https://api.github.com/repos/biopython/biopython/pulls/528/comments"},"review_comment":{"href":"https://api.github.com/repos/biopython/biopython/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/biopython/biopython/pulls/528/commits"},"statuses":{"href":"https://api.github.com/repos/biopython/biopython/statuses/b22adef180865cebbc19dd394a03ebad505217d9"}},"merged":false,"mergeable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"commits":4,"additions":154,"deletions":20,"changed_files":3}}