{"action":"closed","issue":{"url":"https://api.github.com/repos/McDowellLab/loadflex/issues/23","labels_url":"https://api.github.com/repos/McDowellLab/loadflex/issues/23/labels{/name}","comments_url":"https://api.github.com/repos/McDowellLab/loadflex/issues/23/comments","events_url":"https://api.github.com/repos/McDowellLab/loadflex/issues/23/events","html_url":"https://github.com/McDowellLab/loadflex/issues/23","id":85908803,"number":23,"title":"check issue: checking Rd \\usage sections ... WARNING","user":{"login":"appling","id":2822292,"avatar_url":"https://avatars.githubusercontent.com/u/2822292?v=3","gravatar_id":"","url":"https://api.github.com/users/appling","html_url":"https://github.com/appling","followers_url":"https://api.github.com/users/appling/followers","following_url":"https://api.github.com/users/appling/following{/other_user}","gists_url":"https://api.github.com/users/appling/gists{/gist_id}","starred_url":"https://api.github.com/users/appling/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/appling/subscriptions","organizations_url":"https://api.github.com/users/appling/orgs","repos_url":"https://api.github.com/users/appling/repos","events_url":"https://api.github.com/users/appling/events{/privacy}","received_events_url":"https://api.github.com/users/appling/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/McDowellLab/loadflex/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":{"login":"miguelcleon","id":5941108,"avatar_url":"https://avatars.githubusercontent.com/u/5941108?v=3","gravatar_id":"","url":"https://api.github.com/users/miguelcleon","html_url":"https://github.com/miguelcleon","followers_url":"https://api.github.com/users/miguelcleon/followers","following_url":"https://api.github.com/users/miguelcleon/following{/other_user}","gists_url":"https://api.github.com/users/miguelcleon/gists{/gist_id}","starred_url":"https://api.github.com/users/miguelcleon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/miguelcleon/subscriptions","organizations_url":"https://api.github.com/users/miguelcleon/orgs","repos_url":"https://api.github.com/users/miguelcleon/repos","events_url":"https://api.github.com/users/miguelcleon/events{/privacy}","received_events_url":"https://api.github.com/users/miguelcleon/received_events","type":"User","site_admin":false},"milestone":null,"comments":0,"created_at":"2015-06-07T14:43:00Z","updated_at":"2015-06-10T19:42:27Z","closed_at":"2015-06-10T19:42:27Z","body":"checking Rd \\usage sections ... WARNING\r\n- [x] Objects in \\usage without \\alias in documentation object 'equals.metadata':\r\n  '\\S4method{==}{metadata,metadata}'\r\n\r\n- [x] Undocumented arguments in documentation object 'estimateMSE.loadComp'\r\n  'method'\r\n\r\n- [x] Undocumented arguments in documentation object 'estimateRho'\r\n  'use.log' 'plot.acf' 'timestep.tol' 'irregular.timesteps.ok'\r\n\r\n- [x] Undocumented arguments in documentation object 'fluxInfluence'\r\n  'fit.function' 'obs.calib' 'obs.adjust' 'data.to.predict'\r\n  'correction.method' 'replace.negatives' 'aggregation.interval'\r\n  'influence.on'\r\n- [x] Documented arguments not in \\usage in documentation object 'fluxInfluence':\r\n  'fit.and.total.function' 'X.calib' 'Y.calib' 'X.est' 'P.est'\r\n\r\n- [x] Undocumented arguments in documentation object 'genericDistanceWeightedInterpolation'\r\n  'inv.dist.fun'\r\n\r\n- [x] Undocumented arguments in documentation object 'getMetadata.loadReg'\r\n  'fit'\r\n- [x] Documented arguments not in \\usage in documentation object 'getMetadata.loadReg':\r\n  'load.model'\r\n\r\n- [x] Undocumented arguments in documentation object 'isTimestepRegular'\r\n  'tol'\r\n\r\n- [x] Undocumented arguments in documentation object 'loadComp'\r\n  'MSE.method'\r\n\r\n- [x] Undocumented arguments in documentation object 'loadLm'\r\n  'fitting_function' 'y.trans.function'\r\n\r\n- [x] Undocumented arguments in documentation object 'loadModel'\r\n  'metadata'\r\n\r\n- [x] Undocumented arguments in documentation object 'loadReg2'\r\n  '...'\r\n\r\n- [x] Undocumented arguments in documentation object 'metadata'\r\n  'metadata'\r\n\r\n- [x] Undocumented arguments in documentation object 'plotCM'\r\n  'linear.interpolation' 'dateField'\r\n- [x] Documented arguments not in \\usage in documentation object 'plotCM':\r\n  'linear.interpoltation'\r\n\r\n- [x] Undocumented arguments in documentation object 'plotResidualsCM'\r\n  'type' 'xObservations' 'xFlow'\r\n\r\n- [x] Undocumented arguments in documentation object 'residDurbinWatson'\r\n  'timestep.tol'\r\n\r\n- [x] Objects in \\usage without \\alias in documentation object 'show.loadModel':\r\n  '\\S4method{show}{loadModel}'\r\n\r\n- [x] Objects in \\usage without \\alias in documentation object 'show.metadata':\r\n  '\\S4method{show}{metadata}'\r\n\r\n- [x] Undocumented arguments in documentation object 'simulateSolute'\r\n  '...'\r\n\r\n- [x] Undocumented arguments in documentation object 'simulateSolute.loadLm'\r\n  '...'\r\n\r\n- [x] Undocumented arguments in documentation object 'simulateSolute.loadModel'\r\n  '...'\r\n\r\n- [x] Undocumented arguments in documentation object 'simulateSolute.loadReg2'\r\n  '...'\r\n\r\n- [x] Undocumented arguments in documentation object 'validLoadModelInterface'\r\n  'verbose'\r\n\r\n- [x] Undocumented arguments in documentation object 'validMetadataUnits'\r\n  'unit.type'\r\n\r\nFunctions with \\usage entries need to have the appropriate \\alias\r\nentries, and all their arguments documented.\r\nThe \\usage entries must correspond to syntactically valid R code.\r\nSee chapter 'Writing R documentation files' in the 'Writing R\r\nExtensions' manual.\r\n"}}