{"action":"opened","number":347,"pull_request":{"url":"https://api.github.com/repos/ClinGen/clincoded/pulls/347","id":46564144,"html_url":"https://github.com/ClinGen/clincoded/pull/347","diff_url":"https://github.com/ClinGen/clincoded/pull/347.diff","patch_url":"https://github.com/ClinGen/clincoded/pull/347.patch","issue_url":"https://api.github.com/repos/ClinGen/clincoded/issues/347","number":347,"state":"open","locked":false,"title":"Connects to #303 ft assessments","user":{"login":"forresttanaka","id":1181324,"avatar_url":"https://avatars.githubusercontent.com/u/1181324?v=3","gravatar_id":"","url":"https://api.github.com/users/forresttanaka","html_url":"https://github.com/forresttanaka","followers_url":"https://api.github.com/users/forresttanaka/followers","following_url":"https://api.github.com/users/forresttanaka/following{/other_user}","gists_url":"https://api.github.com/users/forresttanaka/gists{/gist_id}","starred_url":"https://api.github.com/users/forresttanaka/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/forresttanaka/subscriptions","organizations_url":"https://api.github.com/users/forresttanaka/orgs","repos_url":"https://api.github.com/users/forresttanaka/repos","events_url":"https://api.github.com/users/forresttanaka/events{/privacy}","received_events_url":"https://api.github.com/users/forresttanaka/received_events","type":"User","site_admin":false},"body":"##### Make first GDM\r\n\r\n1. Make a new GDM and add a PMID to it.\r\n2. Make a new family and fill out the required fields, and whatever you want in the Segregation panel.\r\n3. Leave it unassessed.\r\n4. Save the family and go back to Record Curation.\r\n5. Click the family’s View link.\r\n6. Verify that it has the segregation information you entered, and that its Assessment shows “None.”\r\n7. Change its assessment to something that’s *not* “Not Assessed” in the Segregation Assessment panel and click **Update**. Verify the new assessment status appears in the “Family — Segregation” panel above, and the appropriate message appears next to the Update button.\r\n8. Close the View Family window.\r\n9. Click the **Edit** link for the family and verify its “Family — Segregation” panel is read-only and shows the proper data you entered, as well as the proper assessment. Verify the “Family — Segregation Assessment” panel shows the right (editable) assessment.\r\n10. Change the assessment to “Not Assessed” and save it.\r\n11. Back on Record Curation, click the family’s **Edit** link again to verify that the “Family — Segregation” panel is editable again.\r\n\r\n##### “Other” Curator Effects\r\n\r\nThe next steps require a second login.\r\n\r\n1. While in Record Curation for the test GDM, copy the GDM URL to make the next steps easier, then log out, and then log in as a different curator (I’ll use “Curator 1” and “Curator 2” from now).\r\n2. As Curator 2, paste the URL you copied before to go back to that GDM.\r\n3. Find the family you made as Curator 1 and click its View link. Verify the “Family — Segregation” panel shows “Not Assessed” and Curator 1’s name in parentheses. Also verify that no assessment panel exists — Curator 1 has to have assessed their own segregation first.\r\n4. Close the View Family window, then logout.\r\n5. Login as Curator 1 again and go back to the GDM.\r\n5. Click the **View** link for the family.\r\n6. Change the assessment to anything *not* “Not Assessed.”\r\n7. Click the **Update** button and verify the segregation shows the updated assessment.\r\n8. Close the View Family window, and log out as Curator 1.\r\n9. Login as Curator 2 and go to the same GDM URL.\r\n10. Click the **View** link for the family. Verify the “Family — Segregation” panel shows the correct assessment.\r\n11. Verify the “Segregaion Assessment” panel appears.\r\n12. Choose any assessment that’s *not* “Not Assessed” and click the Update button. Verify the assessment gets added to the list of assessments in the “Family — Segregation” panel.\r\n13. Close the Family View window.\r\n14. Log out of Curator 2 and login as Curator 1, and go back to the GDM.\r\n15. Click the **View** link for the family and verify the “Family — Segregation” panel is read-only and shows the correct list of assessments.\r\n16. Click the **Assessment:** dropdown and verify the “Not Assessed” option is grayed out.\r\n17. Close the View Family window and logout from Curator 1, and login as Curator 2. Go back to the GDM.\r\n18. Click the **View** link for the family.\r\n19. Change the segregation Assessment to **Not Assessed** and click **Update**. Verify the “Family — Segregation” panel shows the updated assessment.\r\n20. Close the Family View window.\r\n21. Logout of Curator 2 and login as Curator 1. Go back to the GDM.\r\n22. Click the **Edit** link for the family and verify the “Family — Segregation” panel is read-only, and shows the proper list of assessments.\r\n23. Verify the Assessment dropdown allows you to select “Not Assessed.” Choose **Not Assessed** and save the family.\r\n24. From Record Curation, click the **Edit** link and verify the “Family — Segregation” panel is editable again.","created_at":"2015-10-01T19:12:10Z","updated_at":"2015-10-01T19:12:11Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/ClinGen/clincoded/pulls/347/commits","review_comments_url":"https://api.github.com/repos/ClinGen/clincoded/pulls/347/comments","review_comment_url":"https://api.github.com/repos/ClinGen/clincoded/pulls/comments{/number}","comments_url":"https://api.github.com/repos/ClinGen/clincoded/issues/347/comments","statuses_url":"https://api.github.com/repos/ClinGen/clincoded/statuses/9a38ef94a207c15f9cb25926f85bc2379cd4b7d6","head":{"label":"ClinGen:303_ft_assessments","ref":"303_ft_assessments","sha":"9a38ef94a207c15f9cb25926f85bc2379cd4b7d6","user":{"login":"ClinGen","id":7255261,"avatar_url":"https://avatars.githubusercontent.com/u/7255261?v=3","gravatar_id":"","url":"https://api.github.com/users/ClinGen","html_url":"https://github.com/ClinGen","followers_url":"https://api.github.com/users/ClinGen/followers","following_url":"https://api.github.com/users/ClinGen/following{/other_user}","gists_url":"https://api.github.com/users/ClinGen/gists{/gist_id}","starred_url":"https://api.github.com/users/ClinGen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClinGen/subscriptions","organizations_url":"https://api.github.com/users/ClinGen/orgs","repos_url":"https://api.github.com/users/ClinGen/repos","events_url":"https://api.github.com/users/ClinGen/events{/privacy}","received_events_url":"https://api.github.com/users/ClinGen/received_events","type":"Organization","site_admin":false},"repo":{"id":36758056,"name":"clincoded","full_name":"ClinGen/clincoded","owner":{"login":"ClinGen","id":7255261,"avatar_url":"https://avatars.githubusercontent.com/u/7255261?v=3","gravatar_id":"","url":"https://api.github.com/users/ClinGen","html_url":"https://github.com/ClinGen","followers_url":"https://api.github.com/users/ClinGen/followers","following_url":"https://api.github.com/users/ClinGen/following{/other_user}","gists_url":"https://api.github.com/users/ClinGen/gists{/gist_id}","starred_url":"https://api.github.com/users/ClinGen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClinGen/subscriptions","organizations_url":"https://api.github.com/users/ClinGen/orgs","repos_url":"https://api.github.com/users/ClinGen/repos","events_url":"https://api.github.com/users/ClinGen/events{/privacy}","received_events_url":"https://api.github.com/users/ClinGen/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/ClinGen/clincoded","description":"Metadata database for ClinGen based on ENCODE","fork":false,"url":"https://api.github.com/repos/ClinGen/clincoded","forks_url":"https://api.github.com/repos/ClinGen/clincoded/forks","keys_url":"https://api.github.com/repos/ClinGen/clincoded/keys{/key_id}","collaborators_url":"https://api.github.com/repos/ClinGen/clincoded/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/ClinGen/clincoded/teams","hooks_url":"https://api.github.com/repos/ClinGen/clincoded/hooks","issue_events_url":"https://api.github.com/repos/ClinGen/clincoded/issues/events{/number}","events_url":"https://api.github.com/repos/ClinGen/clincoded/events","assignees_url":"https://api.github.com/repos/ClinGen/clincoded/assignees{/user}","branches_url":"https://api.github.com/repos/ClinGen/clincoded/branches{/branch}","tags_url":"https://api.github.com/repos/ClinGen/clincoded/tags","blobs_url":"https://api.github.com/repos/ClinGen/clincoded/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/ClinGen/clincoded/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/ClinGen/clincoded/git/refs{/sha}","trees_url":"https://api.github.com/repos/ClinGen/clincoded/git/trees{/sha}","statuses_url":"https://api.github.com/repos/ClinGen/clincoded/statuses/{sha}","languages_url":"https://api.github.com/repos/ClinGen/clincoded/languages","stargazers_url":"https://api.github.com/repos/ClinGen/clincoded/stargazers","contributors_url":"https://api.github.com/repos/ClinGen/clincoded/contributors","subscribers_url":"https://api.github.com/repos/ClinGen/clincoded/subscribers","subscription_url":"https://api.github.com/repos/ClinGen/clincoded/subscription","commits_url":"https://api.github.com/repos/ClinGen/clincoded/commits{/sha}","git_commits_url":"https://api.github.com/repos/ClinGen/clincoded/git/commits{/sha}","comments_url":"https://api.github.com/repos/ClinGen/clincoded/comments{/number}","issue_comment_url":"https://api.github.com/repos/ClinGen/clincoded/issues/comments{/number}","contents_url":"https://api.github.com/repos/ClinGen/clincoded/contents/{+path}","compare_url":"https://api.github.com/repos/ClinGen/clincoded/compare/{base}...{head}","merges_url":"https://api.github.com/repos/ClinGen/clincoded/merges","archive_url":"https://api.github.com/repos/ClinGen/clincoded/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/ClinGen/clincoded/downloads","issues_url":"https://api.github.com/repos/ClinGen/clincoded/issues{/number}","pulls_url":"https://api.github.com/repos/ClinGen/clincoded/pulls{/number}","milestones_url":"https://api.github.com/repos/ClinGen/clincoded/milestones{/number}","notifications_url":"https://api.github.com/repos/ClinGen/clincoded/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/ClinGen/clincoded/labels{/name}","releases_url":"https://api.github.com/repos/ClinGen/clincoded/releases{/id}","created_at":"2015-06-02T19:54:12Z","updated_at":"2015-09-23T20:38:57Z","pushed_at":"2015-10-01T19:05:38Z","git_url":"git://github.com/ClinGen/clincoded.git","ssh_url":"git@github.com:ClinGen/clincoded.git","clone_url":"https://github.com/ClinGen/clincoded.git","svn_url":"https://github.com/ClinGen/clincoded","homepage":"http://www.clinicalgenome.org","size":302100,"stargazers_count":1,"watchers_count":1,"language":"Groff","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":1,"mirror_url":null,"open_issues_count":197,"forks":1,"open_issues":197,"watchers":1,"default_branch":"dev"}},"base":{"label":"ClinGen:dev","ref":"dev","sha":"c665dc5c86c90fc1df559ff1384c0e5964e43276","user":{"login":"ClinGen","id":7255261,"avatar_url":"https://avatars.githubusercontent.com/u/7255261?v=3","gravatar_id":"","url":"https://api.github.com/users/ClinGen","html_url":"https://github.com/ClinGen","followers_url":"https://api.github.com/users/ClinGen/followers","following_url":"https://api.github.com/users/ClinGen/following{/other_user}","gists_url":"https://api.github.com/users/ClinGen/gists{/gist_id}","starred_url":"https://api.github.com/users/ClinGen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClinGen/subscriptions","organizations_url":"https://api.github.com/users/ClinGen/orgs","repos_url":"https://api.github.com/users/ClinGen/repos","events_url":"https://api.github.com/users/ClinGen/events{/privacy}","received_events_url":"https://api.github.com/users/ClinGen/received_events","type":"Organization","site_admin":false},"repo":{"id":36758056,"name":"clincoded","full_name":"ClinGen/clincoded","owner":{"login":"ClinGen","id":7255261,"avatar_url":"https://avatars.githubusercontent.com/u/7255261?v=3","gravatar_id":"","url":"https://api.github.com/users/ClinGen","html_url":"https://github.com/ClinGen","followers_url":"https://api.github.com/users/ClinGen/followers","following_url":"https://api.github.com/users/ClinGen/following{/other_user}","gists_url":"https://api.github.com/users/ClinGen/gists{/gist_id}","starred_url":"https://api.github.com/users/ClinGen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClinGen/subscriptions","organizations_url":"https://api.github.com/users/ClinGen/orgs","repos_url":"https://api.github.com/users/ClinGen/repos","events_url":"https://api.github.com/users/ClinGen/events{/privacy}","received_events_url":"https://api.github.com/users/ClinGen/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/ClinGen/clincoded","description":"Metadata database for ClinGen based on ENCODE","fork":false,"url":"https://api.github.com/repos/ClinGen/clincoded","forks_url":"https://api.github.com/repos/ClinGen/clincoded/forks","keys_url":"https://api.github.com/repos/ClinGen/clincoded/keys{/key_id}","collaborators_url":"https://api.github.com/repos/ClinGen/clincoded/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/ClinGen/clincoded/teams","hooks_url":"https://api.github.com/repos/ClinGen/clincoded/hooks","issue_events_url":"https://api.github.com/repos/ClinGen/clincoded/issues/events{/number}","events_url":"https://api.github.com/repos/ClinGen/clincoded/events","assignees_url":"https://api.github.com/repos/ClinGen/clincoded/assignees{/user}","branches_url":"https://api.github.com/repos/ClinGen/clincoded/branches{/branch}","tags_url":"https://api.github.com/repos/ClinGen/clincoded/tags","blobs_url":"https://api.github.com/repos/ClinGen/clincoded/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/ClinGen/clincoded/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/ClinGen/clincoded/git/refs{/sha}","trees_url":"https://api.github.com/repos/ClinGen/clincoded/git/trees{/sha}","statuses_url":"https://api.github.com/repos/ClinGen/clincoded/statuses/{sha}","languages_url":"https://api.github.com/repos/ClinGen/clincoded/languages","stargazers_url":"https://api.github.com/repos/ClinGen/clincoded/stargazers","contributors_url":"https://api.github.com/repos/ClinGen/clincoded/contributors","subscribers_url":"https://api.github.com/repos/ClinGen/clincoded/subscribers","subscription_url":"https://api.github.com/repos/ClinGen/clincoded/subscription","commits_url":"https://api.github.com/repos/ClinGen/clincoded/commits{/sha}","git_commits_url":"https://api.github.com/repos/ClinGen/clincoded/git/commits{/sha}","comments_url":"https://api.github.com/repos/ClinGen/clincoded/comments{/number}","issue_comment_url":"https://api.github.com/repos/ClinGen/clincoded/issues/comments{/number}","contents_url":"https://api.github.com/repos/ClinGen/clincoded/contents/{+path}","compare_url":"https://api.github.com/repos/ClinGen/clincoded/compare/{base}...{head}","merges_url":"https://api.github.com/repos/ClinGen/clincoded/merges","archive_url":"https://api.github.com/repos/ClinGen/clincoded/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/ClinGen/clincoded/downloads","issues_url":"https://api.github.com/repos/ClinGen/clincoded/issues{/number}","pulls_url":"https://api.github.com/repos/ClinGen/clincoded/pulls{/number}","milestones_url":"https://api.github.com/repos/ClinGen/clincoded/milestones{/number}","notifications_url":"https://api.github.com/repos/ClinGen/clincoded/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/ClinGen/clincoded/labels{/name}","releases_url":"https://api.github.com/repos/ClinGen/clincoded/releases{/id}","created_at":"2015-06-02T19:54:12Z","updated_at":"2015-09-23T20:38:57Z","pushed_at":"2015-10-01T19:05:38Z","git_url":"git://github.com/ClinGen/clincoded.git","ssh_url":"git@github.com:ClinGen/clincoded.git","clone_url":"https://github.com/ClinGen/clincoded.git","svn_url":"https://github.com/ClinGen/clincoded","homepage":"http://www.clinicalgenome.org","size":302100,"stargazers_count":1,"watchers_count":1,"language":"Groff","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":1,"mirror_url":null,"open_issues_count":197,"forks":1,"open_issues":197,"watchers":1,"default_branch":"dev"}},"_links":{"self":{"href":"https://api.github.com/repos/ClinGen/clincoded/pulls/347"},"html":{"href":"https://github.com/ClinGen/clincoded/pull/347"},"issue":{"href":"https://api.github.com/repos/ClinGen/clincoded/issues/347"},"comments":{"href":"https://api.github.com/repos/ClinGen/clincoded/issues/347/comments"},"review_comments":{"href":"https://api.github.com/repos/ClinGen/clincoded/pulls/347/comments"},"review_comment":{"href":"https://api.github.com/repos/ClinGen/clincoded/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/ClinGen/clincoded/pulls/347/commits"},"statuses":{"href":"https://api.github.com/repos/ClinGen/clincoded/statuses/9a38ef94a207c15f9cb25926f85bc2379cd4b7d6"}},"merged":false,"mergeable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"commits":37,"additions":153959,"deletions":153518,"changed_files":10}}