{"action":"opened","issue":{"url":"https://api.github.com/repos/ISA-tools/ISAcreator/issues/296","labels_url":"https://api.github.com/repos/ISA-tools/ISAcreator/issues/296/labels{/name}","comments_url":"https://api.github.com/repos/ISA-tools/ISAcreator/issues/296/comments","events_url":"https://api.github.com/repos/ISA-tools/ISAcreator/issues/296/events","html_url":"https://github.com/ISA-tools/ISAcreator/issues/296","id":55186020,"number":296,"title":"Cannot build from source, cannot run the precompiled binary","user":{"login":"childers","id":421248,"avatar_url":"https://avatars.githubusercontent.com/u/421248?v=3","gravatar_id":"","url":"https://api.github.com/users/childers","html_url":"https://github.com/childers","followers_url":"https://api.github.com/users/childers/followers","following_url":"https://api.github.com/users/childers/following{/other_user}","gists_url":"https://api.github.com/users/childers/gists{/gist_id}","starred_url":"https://api.github.com/users/childers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/childers/subscriptions","organizations_url":"https://api.github.com/users/childers/orgs","repos_url":"https://api.github.com/users/childers/repos","events_url":"https://api.github.com/users/childers/events{/privacy}","received_events_url":"https://api.github.com/users/childers/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-01-22T17:51:21Z","updated_at":"2015-01-22T17:51:21Z","closed_at":null,"body":"I was trying to use ISACreator, and have not been able to get it to build or run on my system (OSX10.10.1).  When I try to build the project I get the following output below.  I also tried downloading the precompiled tool directly from the project page (http://isatab.sourceforge.net/tools.html) but the ISACreator would not run directly. I was able to use the CLI command to start it up after navigating to the jar file.\r\n\r\n\r\n$ mvn assembly:assembly -Dmaven.test.skip=true -Pbuild\r\n[INFO] Scanning for projects...\r\n[WARNING] \r\n[WARNING] Some problems were encountered while building the effective model for org.isatools:ISAcreator:bundle:1.7.8\r\n[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-source-plugin is missing. @ line 146, column 21\r\n[WARNING] \r\n[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.\r\n[WARNING] \r\n[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.\r\n[WARNING] \r\n[INFO]                                                                         \r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] Building ISAcreator 1.7.8\r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] \r\n[INFO] >>> maven-assembly-plugin:2.4:assembly (default-cli) > package @ ISAcreator >>>\r\n[WARNING] The POM for xalan:xalan:jar:2.4 is missing, no dependency information available\r\n[WARNING] The POM for org.codehaus.jackson:jackson-core-asl:jar:1.7.0-SNAPSHOT-20101126.221009-1 is missing, no dependency information available\r\n[INFO] \r\n[INFO] --- xmlbeans-maven-plugin:2.3.3:xmlbeans (default) @ ISAcreator ---\r\n[INFO] All schema objects are up to date.\r\n[INFO] \r\n[INFO] --- jaxws-maven-plugin:2.2:wsimport (default) @ ISAcreator ---\r\n[INFO] \r\n[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ ISAcreator ---\r\n[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!\r\n[WARNING] Using platform encoding (UTF-8 actually) to copy filtered resources, i.e. build is platform dependent!\r\n[INFO] Copying 26 resources\r\n[INFO] Copying 666 resources\r\n[INFO] Copying 2672 resources\r\n[INFO] \r\n[INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ ISAcreator ---\r\n[WARNING] File encoding has not been set, using platform encoding UTF-8, i.e. build is platform dependent!\r\n[INFO] Compiling 315 source files to /Users/user1/git-repositories/ISAcreator/target/classes\r\n[INFO] -------------------------------------------------------------\r\n[WARNING] COMPILATION WARNING : \r\n[INFO] -------------------------------------------------------------\r\n[WARNING] bootstrap class path not set in conjunction with -source 1.5\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java:[4,18] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java:[40,18] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/gui/modeselection/ModeSelector.java:[39,18] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING]  A web service endpoint could not be found\r\n6 warnings\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java:[4,18] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java:[40,18] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/gui/modeselection/ModeSelector.java:[39,18] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java:[87,12] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ValidateUI.java:[105,12] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[WARNING] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/gui/modeselection/ModeSelector.java:[91,8] AWTUtilities is internal proprietary API and may be removed in a future release\r\n[INFO] 9 warnings \r\n[INFO] -------------------------------------------------------------\r\n[INFO] -------------------------------------------------------------\r\n[ERROR] COMPILATION ERROR : \r\n[INFO] -------------------------------------------------------------\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[58,12] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[88,104] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[95,106] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[107,53] error: cannot find symbol\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java:[78,56] error: reference to inject is ambiguous, both method inject(Object...) in ResourceInjector and method inject(boolean,Object...) in ResourceInjector match\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[61,22] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[81,17] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[96,8] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[98,8] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[99,8] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[110,13] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[112,13] error: cannot find symbol\r\n[ERROR]  class CiteExploreClient\r\n/Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[120,21] error: cannot find symbol\r\n[INFO] 13 errors \r\n[INFO] -------------------------------------------------------------\r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] BUILD FAILURE\r\n[INFO] ------------------------------------------------------------------------\r\n[INFO] Total time: 8.550 s\r\n[INFO] Finished at: 2015-01-22T12:37:50-05:00\r\n[INFO] Final Memory: 12M/311M\r\n[INFO] ------------------------------------------------------------------------\r\n[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project ISAcreator: Compilation failure: Compilation failure:\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[58,12] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[88,104] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[95,106] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[107,53] error: cannot find symbol\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/validateconvert/ui/ENASubmissionUI.java:[78,56] error: reference to inject is ambiguous, both method inject(Object...) in ResourceInjector and method inject(boolean,Object...) in ResourceInjector match\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[61,22] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[81,17] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[96,8] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[98,8] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[99,8] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[110,13] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[112,13] error: cannot find symbol\r\n[ERROR] class CiteExploreClient\r\n[ERROR] /Users/user1/git-repositories/ISAcreator/src/main/java/org/isatools/isacreator/publicationlocator/CiteExploreClient.java:[120,21] error: cannot find symbol\r\n[ERROR] -> [Help 1]\r\n[ERROR] \r\n[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.\r\n[ERROR] Re-run Maven using the -X switch to enable full debug logging.\r\n[ERROR] \r\n[ERROR] For more information about the errors and possible solutions, please read the following articles:\r\n[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException\r\n\r\n"}}