{"action":"created","issue":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/497","labels_url":"https://api.github.com/repos/GMOD/Apollo/issues/497/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/Apollo/issues/497/comments","events_url":"https://api.github.com/repos/GMOD/Apollo/issues/497/events","html_url":"https://github.com/GMOD/Apollo/issues/497","id":96911858,"number":497,"title":"!!(4h) can not delete isoforms / deletion failure ignored","user":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/GMOD/Apollo/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/GMOD/Apollo/labels/Important","name":"Important","color":"eb6420"},{"url":"https://api.github.com/repos/GMOD/Apollo/labels/Ready","name":"Ready","color":"fbca04"}],"state":"closed","locked":false,"assignee":{"login":"monicacecilia","id":1714621,"avatar_url":"https://avatars.githubusercontent.com/u/1714621?v=3","gravatar_id":"","url":"https://api.github.com/users/monicacecilia","html_url":"https://github.com/monicacecilia","followers_url":"https://api.github.com/users/monicacecilia/followers","following_url":"https://api.github.com/users/monicacecilia/following{/other_user}","gists_url":"https://api.github.com/users/monicacecilia/gists{/gist_id}","starred_url":"https://api.github.com/users/monicacecilia/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/monicacecilia/subscriptions","organizations_url":"https://api.github.com/users/monicacecilia/orgs","repos_url":"https://api.github.com/users/monicacecilia/repos","events_url":"https://api.github.com/users/monicacecilia/events{/privacy}","received_events_url":"https://api.github.com/users/monicacecilia/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/GMOD/Apollo/milestones/16","html_url":"https://github.com/GMOD/Apollo/milestones/2.0.0-RC3","labels_url":"https://api.github.com/repos/GMOD/Apollo/milestones/16/labels","id":1221135,"number":16,"title":"2.0.0-RC3","description":"","creator":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"open_issues":9,"closed_issues":11,"state":"open","created_at":"2015-07-22T21:56:45Z","updated_at":"2015-08-04T20:09:02Z","due_on":"2015-07-30T07:00:00Z","closed_at":null},"comments":1,"created_at":"2015-07-23T21:44:46Z","updated_at":"2015-08-04T20:09:02Z","closed_at":"2015-08-04T20:09:02Z","body":"This was working earlier.  Probably introduced in RC2 . . optimization code is a likely culprit just due to nature of associations, but need to create integration test either way to fix! \r\n\r\n====\r\n\r\nCode to look at reverting:\r\n\r\n- [ ] add / confirm integration test \r\n\r\n=====\r\n- [ ] https://github.com/GMOD/Apollo/pull/460/files#diff-4fce0a6a2c4c13cc38800ed7dcb489f6L9\r\n- [ ] https://github.com/GMOD/Apollo/pull/460/files#diff-4fce0a6a2c4c13cc38800ed7dcb489f6L183\r\n- [ ] https://github.com/GMOD/Apollo/pull/460/files#diff-b5552b4e9fad5ee11f3c83eb66cb01fdL1987\r\n- [ ]  https://github.com/GMOD/Apollo/pull/460/files#diff-093a3cf9e0a83a8d8bbbecc8575e51a9L45 (should just be reverted?) \r\n- [ ] https://github.com/GMOD/Apollo/pull/460/files#diff-5059381e0b30986d68f9bb0d6cdf6000L400    (I'm not sure that this code does the same stuff)\r\n\r\n```\r\n2015-07-23 14:41:24,979 [clientInboundChannel-2] ERROR springwebsocket.GrailsSimpAnnotationMethodMessageHandler  - Unhandled exception\r\njava.lang.reflect.InvocationTargetException\r\n\tat org.bbop.apollo.AnnotationEditorController$__do_annotationEditor_closure3_closure4_closure5.doCall(AnnotationEditorController.groovy:826)\r\n\tat org.bbop.apollo.AnnotationEditorController$__do_annotationEditor_closure3_closure4.doCall(AnnotationEditorController.groovy:825)\r\n\tat org.bbop.apollo.AnnotationEditorController$__do_annotationEditor_closure3.doCall(AnnotationEditorController.groovy:821)\r\n\tat groovyx.gpars.group.PGroup$3.call(PGroup.java:289)\r\n\tat groovyx.gpars.group.PGroup$4.run(PGroup.java:313)\r\n\tat java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)\r\n\tat java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)\r\n\tat java.lang.Thread.run(Thread.java:745)\r\nCaused by: org.springframework.dao.InvalidDataAccessApiUsageException: deleted object would be re-saved by cascade (remove deleted object from associations): [org.bbop.apollo.FeatureRelationship#414121]; nested exception is org.hibernate.ObjectDeletedException: deleted object would be re-saved by cascade (remove deleted object from associations): [org.bbop.apollo.FeatureRelationship#414121]\r\n\t... 8 more\r\nCaused by: org.hibernate.ObjectDeletedException: deleted object would be re-saved by cascade (remove deleted object from associations): [org.bbop.apollo.FeatureRelationship#414121]\r\n\t... 8 more\r\n2015-07-23 14:41:27,338 [http-bio-8080-exec-2] WARN  apollo.AnnotatorController  - Type not found for annotation filter 'null'\r\n2015-07-23 14:41:28,275 [http-bio-8080-exec-7] WARN  apollo.JbrowseController  - File not found: /data/jbrowse/data-amel-demo//tracks.conf\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/comments/127741900","html_url":"https://github.com/GMOD/Apollo/issues/497#issuecomment-127741900","issue_url":"https://api.github.com/repos/GMOD/Apollo/issues/497","id":127741900,"user":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"created_at":"2015-08-04T20:09:02Z","updated_at":"2015-08-04T20:09:02Z","body":"I think that the culprit was a minor (improved) update of hibernate / grails 2.4.5 \r\n\r\nAnyway, you can delete an isoform now."}}