{"action":"opened","issue":{"url":"https://api.github.com/repos/Bioconductor/BiocCheck/issues/37","labels_url":"https://api.github.com/repos/Bioconductor/BiocCheck/issues/37/labels{/name}","comments_url":"https://api.github.com/repos/Bioconductor/BiocCheck/issues/37/comments","events_url":"https://api.github.com/repos/Bioconductor/BiocCheck/issues/37/events","html_url":"https://github.com/Bioconductor/BiocCheck/issues/37","id":60600108,"number":37,"title":"check for direct slot access in man page examples and vignette chunks","user":{"login":"dtenenba","id":2286826,"avatar_url":"https://avatars.githubusercontent.com/u/2286826?v=3","gravatar_id":"","url":"https://api.github.com/users/dtenenba","html_url":"https://github.com/dtenenba","followers_url":"https://api.github.com/users/dtenenba/followers","following_url":"https://api.github.com/users/dtenenba/following{/other_user}","gists_url":"https://api.github.com/users/dtenenba/gists{/gist_id}","starred_url":"https://api.github.com/users/dtenenba/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dtenenba/subscriptions","organizations_url":"https://api.github.com/users/dtenenba/orgs","repos_url":"https://api.github.com/users/dtenenba/repos","events_url":"https://api.github.com/users/dtenenba/events{/privacy}","received_events_url":"https://api.github.com/users/dtenenba/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-03-11T02:16:50Z","updated_at":"2015-03-11T02:16:50Z","closed_at":null,"body":"@hpages requests:\r\n\r\nHi Dan,\r\n\r\nHow hard it would be to report use of direct slot access (e.g.\r\nobj@counts) in the vignette and \\examples sections of the man pages?\r\n\r\nPackage authors should provide accessors (functions or methods) for\r\nextracting from or assigning to slots in their objects. Then they\r\nshould of course use these accessors in the vignette and \\examples\r\nsections of the man pages, and not direct slot access.\r\n\r\nThanks,\r\nH.\r\n\r\n---\r\n\r\nNeed to work around https://github.com/yihui/knitr/issues/970\r\nA package to use to test this:\r\nhttps://tracker.bioconductor.org/file5178/isomiRs_0.99.3.tar.gz\r\n"}}