{"action":"opened","issue":{"url":"https://api.github.com/repos/danlwarren/RWTY/issues/43","labels_url":"https://api.github.com/repos/danlwarren/RWTY/issues/43/labels{/name}","comments_url":"https://api.github.com/repos/danlwarren/RWTY/issues/43/comments","events_url":"https://api.github.com/repos/danlwarren/RWTY/issues/43/events","html_url":"https://github.com/danlwarren/RWTY/issues/43","id":88549616,"number":43,"title":"Problem with running path.dist function","user":{"login":"NickCrouch","id":4922130,"avatar_url":"https://avatars.githubusercontent.com/u/4922130?v=3","gravatar_id":"","url":"https://api.github.com/users/NickCrouch","html_url":"https://github.com/NickCrouch","followers_url":"https://api.github.com/users/NickCrouch/followers","following_url":"https://api.github.com/users/NickCrouch/following{/other_user}","gists_url":"https://api.github.com/users/NickCrouch/gists{/gist_id}","starred_url":"https://api.github.com/users/NickCrouch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NickCrouch/subscriptions","organizations_url":"https://api.github.com/users/NickCrouch/orgs","repos_url":"https://api.github.com/users/NickCrouch/repos","events_url":"https://api.github.com/users/NickCrouch/events{/privacy}","received_events_url":"https://api.github.com/users/NickCrouch/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-06-15T21:48:36Z","updated_at":"2015-06-15T21:48:36Z","closed_at":null,"body":"Hi,\r\n\r\nWhen I try to run the function `topological.autocorr` I run into problems with the called function `path.dist`. In `path.dist` there are the lines:\r\n `   dt1 = phangorn:::coph(tree1)`\r\n` dt2 = phangorn:::coph(tree2)`\r\nhowever the function `coph\r\n"}}