{"action":"created","issue":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/87","labels_url":"https://api.github.com/repos/cjfields/redmine-test/issues/87/labels{/name}","comments_url":"https://api.github.com/repos/cjfields/redmine-test/issues/87/comments","events_url":"https://api.github.com/repos/cjfields/redmine-test/issues/87/events","html_url":"https://github.com/cjfields/redmine-test/issues/87","id":110319355,"number":87,"title":"Problems with Bio::LocatableSeq::length() and strand()","user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Category:%20Core%20Components","name":"Category: Core Components","color":"006699"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Component:%20URL","name":"Component: URL","color":"ededed"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Priority:%20High","name":"Priority: High","color":"996600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Status:%20New","name":"Status: New","color":"FF6600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Tracker:%20Bug","name":"Tracker: Bug","color":"FF0000"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/cjfields/redmine-test/milestones/6","html_url":"https://github.com/cjfields/redmine-test/milestones/post-GSoC%202011","labels_url":"https://api.github.com/repos/cjfields/redmine-test/milestones/6/labels","id":1343487,"number":6,"title":"post-GSoC 2011","description":null,"creator":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":0,"state":"open","created_at":"2015-10-07T21:21:04Z","updated_at":"2015-10-07T21:21:05Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2015-10-07T21:21:05Z","updated_at":"2015-10-07T21:21:08Z","closed_at":null,"body":"---\n\n\nAuthor Name: **Chris Fields** (@cjfields)\nOriginal Redmine Issue: 3129, https://redmine.open-bio.org/issues/3129\nOriginal Date: 2010-08-03\nOriginal Assignee: Chris Fields\n\n---\n\nWhile fixing bug 2984, I noticed Bio::LocatableSeq is wrong when calculating length (it is returning the string length, not end - start + 1) and strand() is inconsistent (not one of 0, –1, +1). Fixing the problem within LocatableSeq leads to test failures elsewhere.\n\nHave added a couple of tests for this in t/AlignIO/phylip.t. This may have to wait for the GSoC project to finish up.\n\n\n\n\n"},"comment":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/comments/146333257","html_url":"https://github.com/cjfields/redmine-test/issues/87#issuecomment-146333257","issue_url":"https://api.github.com/repos/cjfields/redmine-test/issues/87","id":146333257,"user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"created_at":"2015-10-07T21:21:08Z","updated_at":"2015-10-07T21:21:08Z","body":"---\n\nOriginal Redmine Comment\nAuthor Name: **Chris Fields** \nOriginal Date: 2011-07-17T14:26:54Z\n\n---\n\nPushing this to the front, will attempt fixing on main trunk. Bio::LocatableSeq should also be moved into Bio::Range or into it’s own repo (maybe along with other related modules).\n\n"}}