{"action":"created","issue":{"url":"https://api.github.com/repos/diekhans/ga4gh-schemas-genome-ann/issues/12","labels_url":"https://api.github.com/repos/diekhans/ga4gh-schemas-genome-ann/issues/12/labels{/name}","comments_url":"https://api.github.com/repos/diekhans/ga4gh-schemas-genome-ann/issues/12/comments","events_url":"https://api.github.com/repos/diekhans/ga4gh-schemas-genome-ann/issues/12/events","html_url":"https://github.com/diekhans/ga4gh-schemas-genome-ann/issues/12","id":55666456,"number":12,"title":"`Wiggle` interop with `SeqAnnRegion`","user":{"login":"laserson","id":118141,"avatar_url":"https://avatars.githubusercontent.com/u/118141?v=3","gravatar_id":"","url":"https://api.github.com/users/laserson","html_url":"https://github.com/laserson","followers_url":"https://api.github.com/users/laserson/followers","following_url":"https://api.github.com/users/laserson/following{/other_user}","gists_url":"https://api.github.com/users/laserson/gists{/gist_id}","starred_url":"https://api.github.com/users/laserson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laserson/subscriptions","organizations_url":"https://api.github.com/users/laserson/orgs","repos_url":"https://api.github.com/users/laserson/repos","events_url":"https://api.github.com/users/laserson/events{/privacy}","received_events_url":"https://api.github.com/users/laserson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2015-01-27T19:56:30Z","updated_at":"2015-01-29T08:41:53Z","closed_at":null,"body":"I like the `Wiggle` object a lot.  I tried modeling wiggle data by creating length-1 `Feature` objects in the ADAM schema, but it's obviously less efficient.\r\n\r\nOne issue, though, is that performing interval arithmetic will be a lot more complicated, and will have to be special-cased for this data.  Not sure what the best solution is though..."},"comment":{"url":"https://api.github.com/repos/diekhans/ga4gh-schemas-genome-ann/issues/comments/71988623","html_url":"https://github.com/diekhans/ga4gh-schemas-genome-ann/issues/12#issuecomment-71988623","issue_url":"https://api.github.com/repos/diekhans/ga4gh-schemas-genome-ann/issues/12","id":71988623,"user":{"login":"dzerbino","id":33239,"avatar_url":"https://avatars.githubusercontent.com/u/33239?v=3","gravatar_id":"","url":"https://api.github.com/users/dzerbino","html_url":"https://github.com/dzerbino","followers_url":"https://api.github.com/users/dzerbino/followers","following_url":"https://api.github.com/users/dzerbino/following{/other_user}","gists_url":"https://api.github.com/users/dzerbino/gists{/gist_id}","starred_url":"https://api.github.com/users/dzerbino/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dzerbino/subscriptions","organizations_url":"https://api.github.com/users/dzerbino/orgs","repos_url":"https://api.github.com/users/dzerbino/repos","events_url":"https://api.github.com/users/dzerbino/events{/privacy}","received_events_url":"https://api.github.com/users/dzerbino/received_events","type":"User","site_admin":false},"created_at":"2015-01-29T08:41:53Z","updated_at":"2015-01-29T08:41:53Z","body":"I have concerns about parent ids insofar as they don't allow you to detect\r\nmissing data. Children list at least tell you how many children to expect.\r\nOr maybe the children should have parent ids, and the parents a child count?\r\n\r\nMy two cents,\r\n\r\nDaniel\r\nOn 29 Jan 2015 07:53, \"Mark Diekhans\" <notifications@github.com> wrote:\r\n\r\n>\r\n> please see:\r\n>\r\n>\r\n> https://github.com/diekhans/ga4gh-schemas-genome-ann/blob/genome-annotation-generic/src/main/resources/avro/sequenceAnnotations.avdl\r\n>\r\n> Reference by id rather than containment is consistent with the\r\n> varient API. Well, it's essential for it, due to the potential\r\n> size.\r\n>\r\n> I took a crack at expressing this as child ids rather than\r\n> parent ids. I believe that GFF3 used parent ids as a\r\n> simplification, but I am not sure it's the best representation.\r\n>\r\n> Comments welcome\r\n>\r\n> —\r\n> Reply to this email directly or view it on GitHub\r\n> <https://github.com/diekhans/ga4gh-schemas-genome-ann/issues/12#issuecomment-71983803>\r\n> .\r\n>"}}