{"action":"created","issue":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1408","labels_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1408/labels{/name}","comments_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1408/comments","events_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1408/events","html_url":"https://github.com/CellProfiler/CellProfiler/issues/1408","id":95400807,"number":1408,"title":"Analysis worker error","user":{"login":"braymp","id":1186440,"avatar_url":"https://avatars.githubusercontent.com/u/1186440?v=3","gravatar_id":"","url":"https://api.github.com/users/braymp","html_url":"https://github.com/braymp","followers_url":"https://api.github.com/users/braymp/followers","following_url":"https://api.github.com/users/braymp/following{/other_user}","gists_url":"https://api.github.com/users/braymp/gists{/gist_id}","starred_url":"https://api.github.com/users/braymp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/braymp/subscriptions","organizations_url":"https://api.github.com/users/braymp/orgs","repos_url":"https://api.github.com/users/braymp/repos","events_url":"https://api.github.com/users/braymp/events{/privacy}","received_events_url":"https://api.github.com/users/braymp/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/labels/Bug","name":"Bug","color":"e10c02"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/milestones/1","html_url":"https://github.com/CellProfiler/CellProfiler/milestones/CellProfiler%202.1.2%20","labels_url":"https://api.github.com/repos/CellProfiler/CellProfiler/milestones/1/labels","id":493817,"number":1,"title":"CellProfiler 2.1.2 ","description":"Mentioned in the NIH CellProfiler R01, year 4.","creator":{"login":"AnneCarpenter","id":1213811,"avatar_url":"https://avatars.githubusercontent.com/u/1213811?v=3","gravatar_id":"","url":"https://api.github.com/users/AnneCarpenter","html_url":"https://github.com/AnneCarpenter","followers_url":"https://api.github.com/users/AnneCarpenter/followers","following_url":"https://api.github.com/users/AnneCarpenter/following{/other_user}","gists_url":"https://api.github.com/users/AnneCarpenter/gists{/gist_id}","starred_url":"https://api.github.com/users/AnneCarpenter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AnneCarpenter/subscriptions","organizations_url":"https://api.github.com/users/AnneCarpenter/orgs","repos_url":"https://api.github.com/users/AnneCarpenter/repos","events_url":"https://api.github.com/users/AnneCarpenter/events{/privacy}","received_events_url":"https://api.github.com/users/AnneCarpenter/received_events","type":"User","site_admin":false},"open_issues":31,"closed_issues":48,"state":"open","created_at":"2013-11-22T15:38:38Z","updated_at":"2015-07-30T18:06:37Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2015-07-16T10:11:15Z","updated_at":"2015-07-30T20:06:59Z","closed_at":null,"body":"Running the attached project file from source yields the following error:\n```\nTraceback (most recent call last):\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\pipeline.py\", line 1948, in run_image_set\n    self.run_module(module, workspace)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\pipeline.py\", line 2059, in run_module\n    module.run(workspace)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\modules\\displaydataonimage.py\", line 236, in run\n    pixel_data = image.pixel_data\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\cpimage.py\", line 102, in get_image\n    return self.__image.get()\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\cpimage.py\", line 434, in get\n    image = self.__backing_store.get_image(self.__name)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\utilities\\hdf5_dict.py\", line 1551, in get_image\n    return self.root[image_name][:]\n  File \"D:\\Python27\\lib\\site-packages\\h5py\\_hl\\group.py\", line 153, in __getitem__\n    oid = h5o.open(self.id, self._e(name), lapl=self._lapl)\n  File \"h5py\\h5o.pyx\", line 183, in h5py.h5o.open (h5py\\h5o.c:3311)\nKeyError: \"Unable to open object (Object 'origoverlay' doesn't exist)\"\n```\nA later run produced this error:\n```\nTraceback (most recent call last):\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\pipeline.py\", line 1948, in run_image_set\n    self.run_module(module, workspace)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\pipeline.py\", line 2059, in run_module\n    module.run(workspace)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\modules\\saveimages.py\", line 483, in run\n    should_save = self.run_image(workspace)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\modules\\saveimages.py\", line 527, in run_image\n    self.save_image(workspace)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\modules\\saveimages.py\", line 659, in save_image\n    pixels = image.pixel_data\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\cpimage.py\", line 102, in get_image\n    return self.__image.get()\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\cpimage.py\", line 434, in get\n    image = self.__backing_store.get_image(self.__name)\n  File \"D:\\Trunk\\CellProfiler\\cellprofiler\\utilities\\hdf5_dict.py\", line 1551, in get_image\n    return self.root[image_name][:]\n  File \"D:\\Python27\\lib\\site-packages\\h5py\\_hl\\group.py\", line 153, in __getitem__\n    oid = h5o.open(self.id, self._e(name), lapl=self._lapl)\n  File \"h5py\\h5o.pyx\", line 183, in h5py.h5o.open (h5py\\h5o.c:3311)\nKeyError: \"Unable to open object (Object 'displayimage' doesn't exist)\"\n```\nThe analysis continues in the background and runs to completion except for sample11. Running on sample11 only completes with no problems.\r\n\r\nAttachments:\r\nhttp://cellprofiler.org/issues/uploaded/ScaALJ/issue.cpproj"},"comment":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/comments/126465142","html_url":"https://github.com/CellProfiler/CellProfiler/issues/1408#issuecomment-126465142","issue_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/1408","id":126465142,"user":{"login":"LeeKamentsky","id":660469,"avatar_url":"https://avatars.githubusercontent.com/u/660469?v=3","gravatar_id":"","url":"https://api.github.com/users/LeeKamentsky","html_url":"https://github.com/LeeKamentsky","followers_url":"https://api.github.com/users/LeeKamentsky/followers","following_url":"https://api.github.com/users/LeeKamentsky/following{/other_user}","gists_url":"https://api.github.com/users/LeeKamentsky/gists{/gist_id}","starred_url":"https://api.github.com/users/LeeKamentsky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/LeeKamentsky/subscriptions","organizations_url":"https://api.github.com/users/LeeKamentsky/orgs","repos_url":"https://api.github.com/users/LeeKamentsky/repos","events_url":"https://api.github.com/users/LeeKamentsky/events{/privacy}","received_events_url":"https://api.github.com/users/LeeKamentsky/received_events","type":"User","site_admin":false},"created_at":"2015-07-30T20:06:59Z","updated_at":"2015-07-30T20:06:59Z","body":"I just tried it from source on my machine with one worker and it ran through to completion with no errors. I ran it with four workers and no errors. Can you try with the compiled version of CP?"}}