{"action":"created","issue":{"url":"https://api.github.com/repos/mne-tools/mne-python/issues/2162","labels_url":"https://api.github.com/repos/mne-tools/mne-python/issues/2162/labels{/name}","comments_url":"https://api.github.com/repos/mne-tools/mne-python/issues/2162/comments","events_url":"https://api.github.com/repos/mne-tools/mne-python/issues/2162/events","html_url":"https://github.com/mne-tools/mne-python/issues/2162","id":82102279,"number":2162,"title":"no vertices for label","user":{"login":"atalanti","id":12021439,"avatar_url":"https://avatars.githubusercontent.com/u/12021439?v=3","gravatar_id":"","url":"https://api.github.com/users/atalanti","html_url":"https://github.com/atalanti","followers_url":"https://api.github.com/users/atalanti/followers","following_url":"https://api.github.com/users/atalanti/following{/other_user}","gists_url":"https://api.github.com/users/atalanti/gists{/gist_id}","starred_url":"https://api.github.com/users/atalanti/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/atalanti/subscriptions","organizations_url":"https://api.github.com/users/atalanti/orgs","repos_url":"https://api.github.com/users/atalanti/repos","events_url":"https://api.github.com/users/atalanti/events{/privacy}","received_events_url":"https://api.github.com/users/atalanti/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-05-28T20:02:32Z","updated_at":"2015-05-28T21:08:24Z","closed_at":"2015-05-28T21:08:24Z","body":"Dear mne-python users,\r\n\r\nI am trying to compute the connectivity with pli at the source space. My epochs regard the response to an auditory stimuli. As a label file I am using the one of fsaverage which contains 68 labels. My source space is made with oct-6.\r\nWhen I run the code (which like is the one in the example plot_mne_inverse_label_connectivity.py)\r\n\r\nI take the following error:\r\nTraceback (most recent call last):\r\n  File \"connect.py\", line 84, in <module>\r\n    return_generator=True)\r\n  File \"<string>\", line 2, in extract_label_time_course\r\n  File \"/usr/local/lib/python2.7/dist-packages/mne-0.9.dev0-py2.7.egg/mne/utils.py\", line 541, in verbose\r\n    return function(*args, **kwargs)\r\n  File \"/usr/local/lib/python2.7/dist-packages/mne-0.9.dev0-py2.7.egg/mne/source_estimate.py\", line 2949, in extract_label_time_course\r\n    label_tc = list(label_tc)\r\n  File \"/usr/local/lib/python2.7/dist-packages/mne-0.9.dev0-py2.7.egg/mne/source_estimate.py\", line 2811, in _gen_extract_label_time_course\r\n    raise ValueError(msg)\r\nValueError: source space does not contain any vertices for label frontalpole-lh\r\n\r\nWhen I make a new source space with ico-5 and reproduce my fwd file I take the same error.  \r\nIs this happening because of my data or the source space that I am using? Should I exclude this specific label from the fsaverage's label file? \r\nCould you please suggest me a solution or tell me what I do wrong?\r\n\r\nThank you in advance,\r\nBest\r\nAtalanti "},"comment":{"url":"https://api.github.com/repos/mne-tools/mne-python/issues/comments/106600020","html_url":"https://github.com/mne-tools/mne-python/issues/2162#issuecomment-106600020","issue_url":"https://api.github.com/repos/mne-tools/mne-python/issues/2162","id":106600020,"user":{"login":"Eric89GXL","id":2365790,"avatar_url":"https://avatars.githubusercontent.com/u/2365790?v=3","gravatar_id":"","url":"https://api.github.com/users/Eric89GXL","html_url":"https://github.com/Eric89GXL","followers_url":"https://api.github.com/users/Eric89GXL/followers","following_url":"https://api.github.com/users/Eric89GXL/following{/other_user}","gists_url":"https://api.github.com/users/Eric89GXL/gists{/gist_id}","starred_url":"https://api.github.com/users/Eric89GXL/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Eric89GXL/subscriptions","organizations_url":"https://api.github.com/users/Eric89GXL/orgs","repos_url":"https://api.github.com/users/Eric89GXL/repos","events_url":"https://api.github.com/users/Eric89GXL/events{/privacy}","received_events_url":"https://api.github.com/users/Eric89GXL/received_events","type":"User","site_admin":false},"created_at":"2015-05-28T21:08:24Z","updated_at":"2015-05-28T21:08:24Z","body":"Yeah, you have to use labels for the individual subject. You can morph them from fsaverage to your subject if you want, but it would be cleaner to use `read_labels_from_aparc` for the specific subject instead. I'm going to go ahead and close this, feel free to reopen if that doesn't solve your problem."}}