{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/hellbender/issues/789","labels_url":"https://api.github.com/repos/broadinstitute/hellbender/issues/789/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/hellbender/issues/789/comments","events_url":"https://api.github.com/repos/broadinstitute/hellbender/issues/789/events","html_url":"https://github.com/broadinstitute/hellbender/pull/789","id":99505806,"number":789,"title":"Allow clients to request additional bases of reference context in AddContextDataToRead by passing in a function","user":{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"droazen","id":798637,"avatar_url":"https://avatars.githubusercontent.com/u/798637?v=3","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"milestone":null,"comments":6,"created_at":"2015-08-06T19:16:52Z","updated_at":"2015-08-07T22:32:52Z","closed_at":"2015-08-07T16:14:56Z","pull_request":{"url":"https://api.github.com/repos/broadinstitute/hellbender/pulls/789","html_url":"https://github.com/broadinstitute/hellbender/pull/789","diff_url":"https://github.com/broadinstitute/hellbender/pull/789.diff","patch_url":"https://github.com/broadinstitute/hellbender/pull/789.patch"},"body":"-Can now request arbitrary windows of reference bases for each read in AddContextDataToRead\r\n\r\n-Wrote a reference window function for BQSR that retrieves for each read exactly the reference\r\n bases required by the BQSR algorithm.\r\n\r\n-Comprehensive unit tests"},"comment":{"url":"https://api.github.com/repos/broadinstitute/hellbender/issues/comments/128848548","html_url":"https://github.com/broadinstitute/hellbender/pull/789#issuecomment-128848548","issue_url":"https://api.github.com/repos/broadinstitute/hellbender/issues/789","id":128848548,"user":{"login":"jean-philippe-martin","id":10458949,"avatar_url":"https://avatars.githubusercontent.com/u/10458949?v=3","gravatar_id":"","url":"https://api.github.com/users/jean-philippe-martin","html_url":"https://github.com/jean-philippe-martin","followers_url":"https://api.github.com/users/jean-philippe-martin/followers","following_url":"https://api.github.com/users/jean-philippe-martin/following{/other_user}","gists_url":"https://api.github.com/users/jean-philippe-martin/gists{/gist_id}","starred_url":"https://api.github.com/users/jean-philippe-martin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jean-philippe-martin/subscriptions","organizations_url":"https://api.github.com/users/jean-philippe-martin/orgs","repos_url":"https://api.github.com/users/jean-philippe-martin/repos","events_url":"https://api.github.com/users/jean-philippe-martin/events{/privacy}","received_events_url":"https://api.github.com/users/jean-philippe-martin/received_events","type":"User","site_admin":false},"created_at":"2015-08-07T22:32:52Z","updated_at":"2015-08-07T22:32:52Z","body":"I'll have to try that next time. For now it was easier to re-do my changes because I knew exactly what I had done in the branch that was on top of dr_customize_reference_window_in_dataflow_sharding."}}