{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/server/issues/433","labels_url":"https://api.github.com/repos/ga4gh/server/issues/433/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/server/issues/433/comments","events_url":"https://api.github.com/repos/ga4gh/server/issues/433/events","html_url":"https://github.com/ga4gh/server/issues/433","id":84215388,"number":433,"title":"this query get wrong server response back.","user":{"login":"jingchunzhu","id":999493,"avatar_url":"https://avatars.githubusercontent.com/u/999493?v=3","gravatar_id":"","url":"https://api.github.com/users/jingchunzhu","html_url":"https://github.com/jingchunzhu","followers_url":"https://api.github.com/users/jingchunzhu/followers","following_url":"https://api.github.com/users/jingchunzhu/following{/other_user}","gists_url":"https://api.github.com/users/jingchunzhu/gists{/gist_id}","starred_url":"https://api.github.com/users/jingchunzhu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jingchunzhu/subscriptions","organizations_url":"https://api.github.com/users/jingchunzhu/orgs","repos_url":"https://api.github.com/users/jingchunzhu/repos","events_url":"https://api.github.com/users/jingchunzhu/events{/privacy}","received_events_url":"https://api.github.com/users/jingchunzhu/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"milestone":null,"comments":20,"created_at":"2015-06-02T21:17:26Z","updated_at":"2015-06-15T22:07:22Z","closed_at":null,"body":"This following query against umd get 2520 variants back, many are not within the start and end interval\r\npython client_dev.py -vv variants-search --variantSetIds umd --referenceName 17 --start 41227747  --end 41244748 --pageSize 1000 http://ec2-54-148-207-224.us-west-2.compute.amazonaws.com:8000/v0.6.e6d6074\r\n2520 variants\r\n\r\nThe most strange thing is that the xena browser client (in javascript) also get the \"same\"(same in the sense that the same number of variants returned) wrong answer back.\r\n\r\nhowever,  curl command seems to get the correct response back.\r\n\r\ncurl --data '{ \"callSetIds\": [],  \"end\": 41244748, \"referenceName\": \"17\",  \"start\":41227747,  \"variantSetIds\": [\"umd”], “pageSize”:1000}’ --header 'Content-Type: application/json' http://ec2-54-148-207-224.us-west-2.compute.amazonaws.com:8000/v0.6.e6d6074/variants/search\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/ga4gh/server/issues/comments/112223687","html_url":"https://github.com/ga4gh/server/issues/433#issuecomment-112223687","issue_url":"https://api.github.com/repos/ga4gh/server/issues/433","id":112223687,"user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"created_at":"2015-06-15T22:07:22Z","updated_at":"2015-06-15T22:07:22Z","body":"@jeromekelleher it looks like our algorithm only works if the VCF is ordered, and this VCF appears to be unordered (as in, when we pull in the variants they are unordered by (variant.start, variant.end))... I think that's the problem"}}