{"action":"closed","issue":{"url":"https://api.github.com/repos/hall-lab/svtyper/issues/14","labels_url":"https://api.github.com/repos/hall-lab/svtyper/issues/14/labels{/name}","comments_url":"https://api.github.com/repos/hall-lab/svtyper/issues/14/comments","events_url":"https://api.github.com/repos/hall-lab/svtyper/issues/14/events","html_url":"https://github.com/hall-lab/svtyper/issues/14","id":95673334,"number":14,"title":"svtyper on lumpy vcf","user":{"login":"lurens","id":13382631,"avatar_url":"https://avatars.githubusercontent.com/u/13382631?v=3","gravatar_id":"","url":"https://api.github.com/users/lurens","html_url":"https://github.com/lurens","followers_url":"https://api.github.com/users/lurens/followers","following_url":"https://api.github.com/users/lurens/following{/other_user}","gists_url":"https://api.github.com/users/lurens/gists{/gist_id}","starred_url":"https://api.github.com/users/lurens/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lurens/subscriptions","organizations_url":"https://api.github.com/users/lurens/orgs","repos_url":"https://api.github.com/users/lurens/repos","events_url":"https://api.github.com/users/lurens/events{/privacy}","received_events_url":"https://api.github.com/users/lurens/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-07-17T14:57:33Z","updated_at":"2015-08-17T17:04:56Z","closed_at":"2015-08-17T17:04:56Z","body":"hi\r\nI ran lumpy and got the vcf output file.\r\nI would like to run svtyper but i keep getting this error message:\r\nTraceback (most recent call last):\r\n  File \"./svtyper\", line 1078, in <module>\r\n    sys.exit(main())\r\n  File \"./svtyper\", line 1070, in main\r\n    args.debug)\r\n  File \"./svtyper\", line 767, in sv_genotype\r\n    sample = Sample(bam_list[i], spl_bam_list[i], num_samp)\r\n  File \"./svtyper\", line 709, in __init__\r\n    self.name = bam.header['RG'][0]['SM']\r\nKeyError: 'RG'\r\n\r\nIs it related to the -M issue?\r\nThanks\r\n"}}