{"action":"created","issue":{"url":"https://api.github.com/repos/datalad/datalad/issues/33","labels_url":"https://api.github.com/repos/datalad/datalad/issues/33/labels{/name}","comments_url":"https://api.github.com/repos/datalad/datalad/issues/33/comments","events_url":"https://api.github.com/repos/datalad/datalad/issues/33/events","html_url":"https://github.com/datalad/datalad/issues/33","id":53981433,"number":33,"title":"AFNI dereferences files while accessing them","user":{"login":"yarikoptic","id":39889,"avatar_url":"https://avatars.githubusercontent.com/u/39889?v=3","gravatar_id":"","url":"https://api.github.com/users/yarikoptic","html_url":"https://github.com/yarikoptic","followers_url":"https://api.github.com/users/yarikoptic/followers","following_url":"https://api.github.com/users/yarikoptic/following{/other_user}","gists_url":"https://api.github.com/users/yarikoptic/gists{/gist_id}","starred_url":"https://api.github.com/users/yarikoptic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yarikoptic/subscriptions","organizations_url":"https://api.github.com/users/yarikoptic/orgs","repos_url":"https://api.github.com/users/yarikoptic/repos","events_url":"https://api.github.com/users/yarikoptic/events{/privacy}","received_events_url":"https://api.github.com/users/yarikoptic/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/datalad/datalad/milestones/7","labels_url":"https://api.github.com/repos/datalad/datalad/milestones/7/labels","id":928411,"number":7,"title":"Integration: software compatibility tests","description":"For such milestone to be reached we should start testing git-annex'ed datasets with various popular neuroimaging software, while documenting and automating tests to guarantee that our datasets could be seamlessly used without hiccups.","creator":{"login":"hanke","id":136479,"avatar_url":"https://avatars.githubusercontent.com/u/136479?v=3","gravatar_id":"","url":"https://api.github.com/users/hanke","html_url":"https://github.com/hanke","followers_url":"https://api.github.com/users/hanke/followers","following_url":"https://api.github.com/users/hanke/following{/other_user}","gists_url":"https://api.github.com/users/hanke/gists{/gist_id}","starred_url":"https://api.github.com/users/hanke/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hanke/subscriptions","organizations_url":"https://api.github.com/users/hanke/orgs","repos_url":"https://api.github.com/users/hanke/repos","events_url":"https://api.github.com/users/hanke/events{/privacy}","received_events_url":"https://api.github.com/users/hanke/received_events","type":"User","site_admin":false},"open_issues":2,"closed_issues":0,"state":"open","created_at":"2015-01-09T10:17:39Z","updated_at":"2015-01-11T04:36:55Z","due_on":"2015-12-30T05:00:00Z","closed_at":null},"comments":2,"created_at":"2015-01-11T04:29:15Z","updated_at":"2015-01-21T14:31:59Z","closed_at":null,"body":" thus being uncapable to open .BRIKs since .HEADs would be in another key directory:\r\n\r\n```\r\n$> afni 0back_SD_tbi-hc+tlrc.BRIK  \r\n   \r\nThanks go to J Haxby for much encouragement\r\n\r\nInitializing: X11.. Widgets...... Input files:ONLY ATLASES\r\n** Couldn't open .../.git/annex/objects/fW/24/SHA256E-s2280000--b3b0....BRIK as session OR as dataset!\r\n\r\n```\r\n\r\nWorkaround -- use ```AFNI_NOREALPATH=yes```.  I guess we might need to research either this could be a better default and then campaign for it!\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/datalad/datalad/issues/comments/70846573","html_url":"https://github.com/datalad/datalad/issues/33#issuecomment-70846573","issue_url":"https://api.github.com/repos/datalad/datalad/issues/33","id":70846573,"user":{"login":"yarikoptic","id":39889,"avatar_url":"https://avatars.githubusercontent.com/u/39889?v=3","gravatar_id":"","url":"https://api.github.com/users/yarikoptic","html_url":"https://github.com/yarikoptic","followers_url":"https://api.github.com/users/yarikoptic/followers","following_url":"https://api.github.com/users/yarikoptic/following{/other_user}","gists_url":"https://api.github.com/users/yarikoptic/gists{/gist_id}","starred_url":"https://api.github.com/users/yarikoptic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yarikoptic/subscriptions","organizations_url":"https://api.github.com/users/yarikoptic/orgs","repos_url":"https://api.github.com/users/yarikoptic/repos","events_url":"https://api.github.com/users/yarikoptic/events{/privacy}","received_events_url":"https://api.github.com/users/yarikoptic/received_events","type":"User","site_admin":false},"created_at":"2015-01-21T14:31:59Z","updated_at":"2015-01-21T14:31:59Z","body":"also do not forget about \"direct mode\".  For datasets managed exclusively with datalad, and thus git-annex, we might escape all the symlinks madness by simply using direct mode \"installations\". Side effect -- without \"lean view\" ( #25 ) there would be empty (0 size) files present."}}