{"action":"created","issue":{"url":"https://api.github.com/repos/naturalis/supersmart/issues/40","labels_url":"https://api.github.com/repos/naturalis/supersmart/issues/40/labels{/name}","comments_url":"https://api.github.com/repos/naturalis/supersmart/issues/40/comments","events_url":"https://api.github.com/repos/naturalis/supersmart/issues/40/events","html_url":"https://github.com/naturalis/supersmart/issues/40","id":57301591,"number":40,"title":"exemplar species has markers for backbone but no markers for clade","user":{"login":"hettling","id":4069510,"avatar_url":"https://avatars.githubusercontent.com/u/4069510?v=3","gravatar_id":"","url":"https://api.github.com/users/hettling","html_url":"https://github.com/hettling","followers_url":"https://api.github.com/users/hettling/followers","following_url":"https://api.github.com/users/hettling/following{/other_user}","gists_url":"https://api.github.com/users/hettling/gists{/gist_id}","starred_url":"https://api.github.com/users/hettling/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hettling/subscriptions","organizations_url":"https://api.github.com/users/hettling/orgs","repos_url":"https://api.github.com/users/hettling/repos","events_url":"https://api.github.com/users/hettling/events{/privacy}","received_events_url":"https://api.github.com/users/hettling/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/naturalis/supersmart/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/naturalis/supersmart/milestones/1","labels_url":"https://api.github.com/repos/naturalis/supersmart/milestones/1/labels","id":550423,"number":1,"title":"v1.0","description":null,"creator":{"login":"rvosa","id":106490,"avatar_url":"https://avatars.githubusercontent.com/u/106490?v=3","gravatar_id":"","url":"https://api.github.com/users/rvosa","html_url":"https://github.com/rvosa","followers_url":"https://api.github.com/users/rvosa/followers","following_url":"https://api.github.com/users/rvosa/following{/other_user}","gists_url":"https://api.github.com/users/rvosa/gists{/gist_id}","starred_url":"https://api.github.com/users/rvosa/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rvosa/subscriptions","organizations_url":"https://api.github.com/users/rvosa/orgs","repos_url":"https://api.github.com/users/rvosa/repos","events_url":"https://api.github.com/users/rvosa/events{/privacy}","received_events_url":"https://api.github.com/users/rvosa/received_events","type":"User","site_admin":false},"open_issues":5,"closed_issues":15,"state":"open","created_at":"2014-01-28T15:05:07Z","updated_at":"2015-02-11T16:32:39Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2015-02-11T10:59:08Z","updated_at":"2015-02-11T16:32:39Z","closed_at":"2015-02-11T16:32:39Z","body":"Using newest supersmart release with order 'primates' as root taxon: Lepilemur  jamesi (486960) is exemplar for genus Lepilemur (9452). In the backbone marker table, many markers are listed for this species. However, in the table reporting markers for the clades, no marker for Lepilemur jamesi is listed! \r\n\r\nThis looks like a bug in smrt BBdecompose and might therefore be related to issue #39. "},"comment":{"url":"https://api.github.com/repos/naturalis/supersmart/issues/comments/73912644","html_url":"https://github.com/naturalis/supersmart/issues/40#issuecomment-73912644","issue_url":"https://api.github.com/repos/naturalis/supersmart/issues/40","id":73912644,"user":{"login":"hettling","id":4069510,"avatar_url":"https://avatars.githubusercontent.com/u/4069510?v=3","gravatar_id":"","url":"https://api.github.com/users/hettling","html_url":"https://github.com/hettling","followers_url":"https://api.github.com/users/hettling/followers","following_url":"https://api.github.com/users/hettling/following{/other_user}","gists_url":"https://api.github.com/users/hettling/gists{/gist_id}","starred_url":"https://api.github.com/users/hettling/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hettling/subscriptions","organizations_url":"https://api.github.com/users/hettling/orgs","repos_url":"https://api.github.com/users/hettling/repos","events_url":"https://api.github.com/users/hettling/events{/privacy}","received_events_url":"https://api.github.com/users/hettling/received_events","type":"User","site_admin":false},"created_at":"2015-02-11T16:32:39Z","updated_at":"2015-02-11T16:32:39Z","body":"This was not a bug in BBdecompose, the reason was that the wrong alignment file was used to call BBdecompose (file listing merged clusters instead of file listing all alignments). The workflow for the primate example was there for updated    (commit 64642576512329fe5aa1cebfeed095e10b66a40c)"}}