{"action":"created","comment":{"url":"https://api.github.com/repos/mit-crpg/openmc/pulls/comments/40360490","id":40360490,"diff_hunk":"@@ -537,46 +528,100 @@ subroutine write_tallies(file_id)\n         ! Write name of type\n         select case (t%filters(j)%type)\n         case(FILTER_UNIVERSE)\n-          call write_dataset(filter_group, \"type_name\", \"universe\")\n+          call write_dataset(filter_group, \"type\", \"universe\")","path":"src/summary.F90","position":187,"original_position":187,"commit_id":"dd5b288b030e7d1c90ee3a32f727a4629a1a27d1","original_commit_id":"dd5b288b030e7d1c90ee3a32f727a4629a1a27d1","user":{"login":"wbinventor","id":209492,"avatar_url":"https://avatars.githubusercontent.com/u/209492?v=3","gravatar_id":"","url":"https://api.github.com/users/wbinventor","html_url":"https://github.com/wbinventor","followers_url":"https://api.github.com/users/wbinventor/followers","following_url":"https://api.github.com/users/wbinventor/following{/other_user}","gists_url":"https://api.github.com/users/wbinventor/gists{/gist_id}","starred_url":"https://api.github.com/users/wbinventor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wbinventor/subscriptions","organizations_url":"https://api.github.com/users/wbinventor/orgs","repos_url":"https://api.github.com/users/wbinventor/repos","events_url":"https://api.github.com/users/wbinventor/events{/privacy}","received_events_url":"https://api.github.com/users/wbinventor/received_events","type":"User","site_admin":false},"body":"If you choose to use a dictionary to store filter types, remember to reuse it here.","created_at":"2015-09-24T19:17:52Z","updated_at":"2015-09-24T19:17:52Z","html_url":"https://github.com/mit-crpg/openmc/pull/454#discussion_r40360490","pull_request_url":"https://api.github.com/repos/mit-crpg/openmc/pulls/454","_links":{"self":{"href":"https://api.github.com/repos/mit-crpg/openmc/pulls/comments/40360490"},"html":{"href":"https://github.com/mit-crpg/openmc/pull/454#discussion_r40360490"},"pull_request":{"href":"https://api.github.com/repos/mit-crpg/openmc/pulls/454"}}},"pull_request":{"url":"https://api.github.com/repos/mit-crpg/openmc/pulls/454","id":45240151,"html_url":"https://github.com/mit-crpg/openmc/pull/454","diff_url":"https://github.com/mit-crpg/openmc/pull/454.diff","patch_url":"https://github.com/mit-crpg/openmc/pull/454.patch","issue_url":"https://api.github.com/repos/mit-crpg/openmc/issues/454","number":454,"state":"open","locked":false,"title":"More improvements to HDF5 interface and Python API","user":{"login":"paulromano","id":743095,"avatar_url":"https://avatars.githubusercontent.com/u/743095?v=3","gravatar_id":"","url":"https://api.github.com/users/paulromano","html_url":"https://github.com/paulromano","followers_url":"https://api.github.com/users/paulromano/followers","following_url":"https://api.github.com/users/paulromano/following{/other_user}","gists_url":"https://api.github.com/users/paulromano/gists{/gist_id}","starred_url":"https://api.github.com/users/paulromano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/paulromano/subscriptions","organizations_url":"https://api.github.com/users/paulromano/orgs","repos_url":"https://api.github.com/users/paulromano/repos","events_url":"https://api.github.com/users/paulromano/events{/privacy}","received_events_url":"https://api.github.com/users/paulromano/received_events","type":"User","site_admin":false},"body":"Here's yet another pull request that adds improvements to how we handle output. A list of changes is as follows:\r\n\r\n- Instead of writing strings as variable-length to HDF5 files, they are written as fixed-length C-style null-terminated strings for maximum compatibility.\r\n- A new pair of procedures read_string_1D/write_string_1D allows 1D arrays of strings to be written/read to HDF files. I take advantage of this and write tally score moment orders as an array of strings instead of having a separate dataset for each. Much cleaner!\r\n- Some unused procedures for writing ASCII summary files (which no longer exist) were removed.\r\n- All the UNIT_* constants were removed and the NEWUNIT argument of open() is consistently used for Fortran I/O.\r\n- The openmc.statepoint.StatePoint class now makes judicious use of properties to grab data from the HDF5 file as needed. This eliminates all the `_read_*` methods as well as `StatePoint.read_results`, `Tally.compute_mean` and `Tally.compute_std_dev`. Tally data is read on-the-fly as it is requested.\r\n- Related to the last point, global_tallies are now represented as a structured array with extra fields 'mean', 'std_dev', and 'name'. The `StatePoint.compute_stdev` and `StatePoint.compute_ci` methods are gone. This does imply that there is no automated method for calculating confidence intervals anymore. Should be simple enough for users to calculate and apply their own t-value if they really want.\r\n- Source sites are now stored as a structured array rather than in a separate SourceSite class (which has been removed).\r\n- The IPython notebooks have been updated accordingly.\r\n\r\n@wbinventor Assigning you since there are quite a few changes in the internals of the Python API. You ought to make sure I didn't screw anything up, particularly those things the test suite is missing at the 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