{"action":"created","issue":{"url":"https://api.github.com/repos/cBio/cbio-cluster/issues/246","labels_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/246/labels{/name}","comments_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/246/comments","events_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/246/events","html_url":"https://github.com/cBio/cbio-cluster/issues/246","id":69018320,"number":246,"title":"Python submitted DRMAA jobs are not running on the worker nodes","user":{"login":"vipints","id":1714549,"avatar_url":"https://avatars.githubusercontent.com/u/1714549?v=3","gravatar_id":"","url":"https://api.github.com/users/vipints","html_url":"https://github.com/vipints","followers_url":"https://api.github.com/users/vipints/followers","following_url":"https://api.github.com/users/vipints/following{/other_user}","gists_url":"https://api.github.com/users/vipints/gists{/gist_id}","starred_url":"https://api.github.com/users/vipints/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vipints/subscriptions","organizations_url":"https://api.github.com/users/vipints/orgs","repos_url":"https://api.github.com/users/vipints/repos","events_url":"https://api.github.com/users/vipints/events{/privacy}","received_events_url":"https://api.github.com/users/vipints/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cBio/cbio-cluster/labels/Torque/Moab%20scheduler","name":"Torque/Moab scheduler","color":"009800"},{"url":"https://api.github.com/repos/cBio/cbio-cluster/labels/vendorticket","name":"vendorticket","color":"5319e7"}],"state":"open","locked":false,"assignee":{"login":"tatarsky","id":6439722,"avatar_url":"https://avatars.githubusercontent.com/u/6439722?v=3","gravatar_id":"","url":"https://api.github.com/users/tatarsky","html_url":"https://github.com/tatarsky","followers_url":"https://api.github.com/users/tatarsky/followers","following_url":"https://api.github.com/users/tatarsky/following{/other_user}","gists_url":"https://api.github.com/users/tatarsky/gists{/gist_id}","starred_url":"https://api.github.com/users/tatarsky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tatarsky/subscriptions","organizations_url":"https://api.github.com/users/tatarsky/orgs","repos_url":"https://api.github.com/users/tatarsky/repos","events_url":"https://api.github.com/users/tatarsky/events{/privacy}","received_events_url":"https://api.github.com/users/tatarsky/received_events","type":"User","site_admin":false},"milestone":null,"comments":117,"created_at":"2015-04-16T21:57:58Z","updated_at":"2015-11-25T15:02:53Z","closed_at":null,"body":"Since yesterday, I am struggling to debug an error caused by running python scripts via drmaa module. My compute jobs are failing with `Exit_status=127`, here is one such event, `tracejob -slm -n 2 3025874`. drmaa module is able to dispatch the job to the worker node with all necessary PATH variables but it fails just after that (only using a single second). The log file didn't give much information. \r\n\r\n`-bash: module: line 1: syntax error: unexpected end of file`\r\n`-bash: error importing function definition for BASH_FUNC_module'`\r\n`-bash: line 1: /var/spool/torque/mom_priv/jobs/3025874.mskcc-fe1.local.SC: No such file or directory`\r\n\r\nI am able to run this python script without Torque on the login machine and a worker node (with qlogin). \r\n\r\nDid anybody use drmaa, python combination in cluster computing? \r\n\r\nI checked the drmaa job environment, all env PATH variables are loaded correctly. I am not sure why the worker node is kicking out my job. \r\n\r\nI am not quite sure, how I proceed the debugging/where to look, any suggestions/help :)"},"comment":{"url":"https://api.github.com/repos/cBio/cbio-cluster/issues/comments/159634169","html_url":"https://github.com/cBio/cbio-cluster/issues/246#issuecomment-159634169","issue_url":"https://api.github.com/repos/cBio/cbio-cluster/issues/246","id":159634169,"user":{"login":"tatarsky","id":6439722,"avatar_url":"https://avatars.githubusercontent.com/u/6439722?v=3","gravatar_id":"","url":"https://api.github.com/users/tatarsky","html_url":"https://github.com/tatarsky","followers_url":"https://api.github.com/users/tatarsky/followers","following_url":"https://api.github.com/users/tatarsky/following{/other_user}","gists_url":"https://api.github.com/users/tatarsky/gists{/gist_id}","starred_url":"https://api.github.com/users/tatarsky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tatarsky/subscriptions","organizations_url":"https://api.github.com/users/tatarsky/orgs","repos_url":"https://api.github.com/users/tatarsky/repos","events_url":"https://api.github.com/users/tatarsky/events{/privacy}","received_events_url":"https://api.github.com/users/tatarsky/received_events","type":"User","site_admin":false},"created_at":"2015-11-25T15:02:53Z","updated_at":"2015-11-25T15:02:53Z","body":"Not that I've ever heard of. "}}