{"action":"created","issue":{"url":"https://api.github.com/repos/OpenTreeOfLife/oti/issues/34","labels_url":"https://api.github.com/repos/OpenTreeOfLife/oti/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/OpenTreeOfLife/oti/issues/34/comments","events_url":"https://api.github.com/repos/OpenTreeOfLife/oti/issues/34/events","html_url":"https://github.com/OpenTreeOfLife/oti/issues/34","id":54076115,"number":34,"title":"Indexing failures in a few studies","user":{"login":"jimallman","id":446375,"avatar_url":"https://avatars.githubusercontent.com/u/446375?v=3","gravatar_id":"","url":"https://api.github.com/users/jimallman","html_url":"https://github.com/jimallman","followers_url":"https://api.github.com/users/jimallman/followers","following_url":"https://api.github.com/users/jimallman/following{/other_user}","gists_url":"https://api.github.com/users/jimallman/gists{/gist_id}","starred_url":"https://api.github.com/users/jimallman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jimallman/subscriptions","organizations_url":"https://api.github.com/users/jimallman/orgs","repos_url":"https://api.github.com/users/jimallman/repos","events_url":"https://api.github.com/users/jimallman/events{/privacy}","received_events_url":"https://api.github.com/users/jimallman/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/OpenTreeOfLife/oti/labels/bug","name":"bug","color":"fc2929"}],"state":"open","locked":false,"assignee":{"login":"chinchliff","id":1258397,"avatar_url":"https://avatars.githubusercontent.com/u/1258397?v=3","gravatar_id":"","url":"https://api.github.com/users/chinchliff","html_url":"https://github.com/chinchliff","followers_url":"https://api.github.com/users/chinchliff/followers","following_url":"https://api.github.com/users/chinchliff/following{/other_user}","gists_url":"https://api.github.com/users/chinchliff/gists{/gist_id}","starred_url":"https://api.github.com/users/chinchliff/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chinchliff/subscriptions","organizations_url":"https://api.github.com/users/chinchliff/orgs","repos_url":"https://api.github.com/users/chinchliff/repos","events_url":"https://api.github.com/users/chinchliff/events{/privacy}","received_events_url":"https://api.github.com/users/chinchliff/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2015-01-12T16:42:57Z","updated_at":"2015-06-09T08:43:12Z","closed_at":null,"body":"Today I used the deployment script to re-index **oti**, and a few studies failed (details below).\r\n\r\nStudy **ot_232** reports multiple records(?) found, but there's just one JSON with this id in **phylesystem-1**. This is very similar to [a problem discussed in #26](https://github.com/OpenTreeOfLife/oti/pull/26#discussion_r17401670):\r\n```\r\nIndexing http://api.opentreeoflife.org/phylesystem/v1/../ study ot_232 from http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json\r\nCalling \"http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies\" with data=\"{'urls': ['http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json']}\"\r\n\r\nIndexing failed for URL \"http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json\", study http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_232.json. Message = \"More than one hit found for ot:studyId == ot_232. The database is probably corrupt.\"\r\n```\r\n\r\nTwo others failed with no explanation:\r\n```\r\nIndexing http://api.opentreeoflife.org/phylesystem/v1/../ study ot_31 from http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json\r\nCalling \"http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies\" with data=\"{'urls': ['http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json']}\"\r\n\r\nIndexing failed for URL \"http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json\", study http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_31.json. Message = \"null\"\r\n```\r\n```\r\nIndexing http://api.opentreeoflife.org/phylesystem/v1/../ study ot_32 from http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json\r\nCalling \"http://127.0.0.1:7478/db/data/ext/studies/graphdb/index_studies\" with data=\"{'urls': ['http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json']}\"\r\n\r\nIndexing failed for URL \"http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json\", study http://api.opentreeoflife.org/phylesystem/v1/../default/v1/study/ot_32.json. Message = \"null\"\r\n```"},"comment":{"url":"https://api.github.com/repos/OpenTreeOfLife/oti/issues/comments/110278933","html_url":"https://github.com/OpenTreeOfLife/oti/issues/34#issuecomment-110278933","issue_url":"https://api.github.com/repos/OpenTreeOfLife/oti/issues/34","id":110278933,"user":{"login":"snacktavish","id":1652782,"avatar_url":"https://avatars.githubusercontent.com/u/1652782?v=3","gravatar_id":"","url":"https://api.github.com/users/snacktavish","html_url":"https://github.com/snacktavish","followers_url":"https://api.github.com/users/snacktavish/followers","following_url":"https://api.github.com/users/snacktavish/following{/other_user}","gists_url":"https://api.github.com/users/snacktavish/gists{/gist_id}","starred_url":"https://api.github.com/users/snacktavish/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/snacktavish/subscriptions","organizations_url":"https://api.github.com/users/snacktavish/orgs","repos_url":"https://api.github.com/users/snacktavish/repos","events_url":"https://api.github.com/users/snacktavish/events{/privacy}","received_events_url":"https://api.github.com/users/snacktavish/received_events","type":"User","site_admin":false},"created_at":"2015-06-09T08:43:12Z","updated_at":"2015-06-09T08:43:12Z","body":"Indexing is failing for some studies. \r\nFor example,  https://tree.opentreeoflife.org/curator/study/view/pg_2739 does not appear in the curator home, nor is findable by search.  Also true for https://tree.opentreeoflife.org/curator/study/view/pg_761, the second study on the list of synthesis inputs."}}