{"action":"opened","issue":{"url":"https://api.github.com/repos/IRkernel/IRkernel/issues/136","labels_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/136/labels{/name}","comments_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/136/comments","events_url":"https://api.github.com/repos/IRkernel/IRkernel/issues/136/events","html_url":"https://github.com/IRkernel/IRkernel/issues/136","id":78213948,"number":136,"title":"Missing packages, strangeness","user":{"login":"rgbkrk","id":836375,"avatar_url":"https://avatars.githubusercontent.com/u/836375?v=3","gravatar_id":"","url":"https://api.github.com/users/rgbkrk","html_url":"https://github.com/rgbkrk","followers_url":"https://api.github.com/users/rgbkrk/followers","following_url":"https://api.github.com/users/rgbkrk/following{/other_user}","gists_url":"https://api.github.com/users/rgbkrk/gists{/gist_id}","starred_url":"https://api.github.com/users/rgbkrk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rgbkrk/subscriptions","organizations_url":"https://api.github.com/users/rgbkrk/orgs","repos_url":"https://api.github.com/users/rgbkrk/repos","events_url":"https://api.github.com/users/rgbkrk/events{/privacy}","received_events_url":"https://api.github.com/users/rgbkrk/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-05-19T19:09:15Z","updated_at":"2015-05-19T19:09:15Z","closed_at":null,"body":"This might only be for OS X.\r\n\r\n## Unavailable packages with a fresh R install when pointing repo to `http://irkernel.github.io/`:\r\n\r\n* base64enc\r\n* uuid\r\n\r\n## The rzmq package gets built from source\r\n\r\n```\r\n* installing *source* package ‘rzmq’ ...\r\n```\r\n\r\nNote that because of this, I needed to make sure the xcode cli tools were installed (as they should be anyway) as mentioned in #135.\r\n\r\n## Overall logs\r\n\r\n```\r\n> install.packages(c('rzmq','repr','IRkernel','IRdisplay'), repos = 'http://irkernel.github.io/')\r\nWarning: dependencies ‘uuid’, ‘base64enc’ are not available\r\ntrying URL 'http://irkernel.github.io/src/contrib/rzmq_0.7.7.tar.gz'\r\nContent type 'application/octet-stream' length 897372 bytes (876 KB)\r\n==================================================\r\ndownloaded 876 KB\r\n\r\ntrying URL 'http://irkernel.github.io/src/contrib/repr_0.1.tar.gz'\r\nContent type 'application/octet-stream' length 7153 bytes\r\n==================================================\r\ndownloaded 7153 bytes\r\n\r\ntrying URL 'http://irkernel.github.io/src/contrib/IRkernel_0.3.tar.gz'\r\nContent type 'application/octet-stream' length 16403 bytes (16 KB)\r\n==================================================\r\ndownloaded 16 KB\r\n\r\ntrying URL 'http://irkernel.github.io/src/contrib/IRdisplay_0.3.tar.gz'\r\nContent type 'application/octet-stream' length 3385 bytes\r\n==================================================\r\ndownloaded 3385 bytes\r\n\r\n* installing *source* package ‘rzmq’ ...\r\n** libs\r\nclang++ -std=c++11 -I/usr/local/Cellar/r/3.2.0/R.framework/Resources/include -DNDEBUG -I../inst/cppzmq -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include    -fPIC  -g -O2 -c interface.cpp -o interface.o\r\nclang++ -std=c++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.2.0/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -o rzmq.so interface.o -lzmq -F/usr/local/Cellar/r/3.2.0/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation\r\ninstalling to /usr/local/Cellar/r/3.2.0/R.framework/Versions/3.2/Resources/library/rzmq/libs\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\n** help\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded\r\n* DONE (rzmq)\r\n* installing *source* package ‘repr’ ...\r\n** R\r\n** preparing package for lazy loading\r\n** help\r\nNo man pages found in package  ‘repr’\r\n*** installing help indices\r\n** building package indices\r\n** testing if installed package can be loaded\r\n* DONE (repr)\r\nERROR: dependency ‘base64enc’ is not available for package ‘IRdisplay’\r\n* removing ‘/usr/local/Cellar/r/3.2.0/R.framework/Versions/3.2/Resources/library/IRdisplay’\r\nERROR: dependencies ‘IRdisplay’, ‘uuid’ are not available for package ‘IRkernel’\r\n* removing ‘/usr/local/Cellar/r/3.2.0/R.framework/Versions/3.2/Resources/library/IRkernel’\r\n\r\nThe downloaded source packages are in\r\n\t‘/private/var/folders/ps/1dvr90bd6p3blnyrnpyxnryhv45qg1/T/Rtmp2bFOR7/downloaded_packages’\r\nWarning messages:\r\n1: In install.packages(c(\"rzmq\", \"repr\", \"IRkernel\", \"IRdisplay\"),  :\r\n  installation of package ‘IRdisplay’ had non-zero exit status\r\n2: In install.packages(c(\"rzmq\", \"repr\", \"IRkernel\", \"IRdisplay\"),  :\r\n  installation of package ‘IRkernel’ had non-zero exit status\r\n```"}}