{"action":"created","issue":{"url":"https://api.github.com/repos/juliema/aTRAM/issues/154","labels_url":"https://api.github.com/repos/juliema/aTRAM/issues/154/labels{/name}","comments_url":"https://api.github.com/repos/juliema/aTRAM/issues/154/comments","events_url":"https://api.github.com/repos/juliema/aTRAM/issues/154/events","html_url":"https://github.com/juliema/aTRAM/issues/154","id":65198471,"number":154,"title":"format_sra creates files and hangs","user":{"login":"snacktavish","id":1652782,"avatar_url":"https://avatars.githubusercontent.com/u/1652782?v=3","gravatar_id":"","url":"https://api.github.com/users/snacktavish","html_url":"https://github.com/snacktavish","followers_url":"https://api.github.com/users/snacktavish/followers","following_url":"https://api.github.com/users/snacktavish/following{/other_user}","gists_url":"https://api.github.com/users/snacktavish/gists{/gist_id}","starred_url":"https://api.github.com/users/snacktavish/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/snacktavish/subscriptions","organizations_url":"https://api.github.com/users/snacktavish/orgs","repos_url":"https://api.github.com/users/snacktavish/repos","events_url":"https://api.github.com/users/snacktavish/events{/privacy}","received_events_url":"https://api.github.com/users/snacktavish/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-03-30T12:17:36Z","updated_at":"2015-03-30T15:29:32Z","closed_at":null,"body":"Running format_sra.pl -input SRR610374.fastq -out my_atram_db, creates a bunch of empty .bucket and .sorted files and then just hangs. \r\nSeems to get further if I run it on an sra file, (format_sra.pl -input SRR610374.sra -out my_atram_db), and creates .bucket files that are not empty, but also hangs, and all the .sorted are empty.\r\n\r\nIn both cases last line of log is: Dividing fasta/fastq file into buckets for sorting.\r\n\r\nAdvice? \r\nThanks, this is a great idea and I look forward to using it!\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/juliema/aTRAM/issues/comments/87723178","html_url":"https://github.com/juliema/aTRAM/issues/154#issuecomment-87723178","issue_url":"https://api.github.com/repos/juliema/aTRAM/issues/154","id":87723178,"user":{"login":"snacktavish","id":1652782,"avatar_url":"https://avatars.githubusercontent.com/u/1652782?v=3","gravatar_id":"","url":"https://api.github.com/users/snacktavish","html_url":"https://github.com/snacktavish","followers_url":"https://api.github.com/users/snacktavish/followers","following_url":"https://api.github.com/users/snacktavish/following{/other_user}","gists_url":"https://api.github.com/users/snacktavish/gists{/gist_id}","starred_url":"https://api.github.com/users/snacktavish/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/snacktavish/subscriptions","organizations_url":"https://api.github.com/users/snacktavish/orgs","repos_url":"https://api.github.com/users/snacktavish/repos","events_url":"https://api.github.com/users/snacktavish/events{/privacy}","received_events_url":"https://api.github.com/users/snacktavish/received_events","type":"User","site_admin":false},"created_at":"2015-03-30T15:29:32Z","updated_at":"2015-03-30T15:29:32Z","body":"\"All tests successfully passed.\""}}