{"push_id":796042271,"size":10,"distinct_size":8,"ref":"refs/heads/mkn-unknown","head":"0f14575b20b91ec758cf847c3089832125ff0f24","before":"b5adaae47dcb8e03575f0a51af71f25ffad08119","commits":[{"sha":"4d4ce0e00c891f8de5d6ec51e4ca6df18407e250","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@uic.edu","name":"Emma Goldberg"},"message":"Better checking for multistate characters.\n\nThe \"strict\" test was failing when a state was present only for\n\"uncertain\" species.  The \"multicheck\" fix at least prevents that.","distinct":false,"url":"https://api.github.com/repos/eeg/diversitree/commits/4d4ce0e00c891f8de5d6ec51e4ca6df18407e250"},{"sha":"44f48b2c857bfe664b93a148f0d1ecf25bafc8b2","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@uic.edu","name":"Emma Goldberg"},"message":"Fixed multistate error-checking producing an error.\n\nNow correctly prints names of species lacking trait data.","distinct":false,"url":"https://api.github.com/repos/eeg/diversitree/commits/44f48b2c857bfe664b93a148f0d1ecf25bafc8b2"},{"sha":"9b7528a9a6fd824c59eb7b933fcd738cf56b2aad","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@umn.edu","name":"Emma Goldberg"},"message":"gitignore","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/9b7528a9a6fd824c59eb7b933fcd738cf56b2aad"},{"sha":"04728ef87ff1dd3cccf478e13dfe8e4ce89dd179","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@uic.edu","name":"Emma Goldberg"},"message":"Better checking for multistate characters.\n\nThe \"strict\" test was failing when a state was present only for\n\"uncertain\" species.  The \"multicheck\" fix at least prevents that.","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/04728ef87ff1dd3cccf478e13dfe8e4ce89dd179"},{"sha":"744aa016419c7ac0c6ab1029aeec237d9c58819b","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@uic.edu","name":"Emma Goldberg"},"message":"Fixed multistate error-checking producing an error.\n\nNow correctly prints names of species lacking trait data.","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/744aa016419c7ac0c6ab1029aeec237d9c58819b"},{"sha":"eccb21630accd3c0aaf1ab5b24dd3d1a908186d7","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@umn.edu","name":"Emma Goldberg"},"message":"Experimental: multistate and unknown tips for Mkn\n\nI'm on the right track, but it's not quite working.\n\nTest code:\n\nlibrary(devtools)\ndev_mode()\nload_all(\"~eeg/src/diversitree/\")\nphy <- read.tree(text=\"((A:1, B:1):1.5, C:2.5);\")\nstates <- matrix(c(c(1, 0), c(0.5, 0.5), c(0, 1)), byrow=T, ncol=2)\nrownames(states) <- phy$tip.label\nlik <- make.mkn(phy, states, k=2)\nlik(c(0.1, 0.2))","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/eccb21630accd3c0aaf1ab5b24dd3d1a908186d7"},{"sha":"af9d25f3eaddf32d4e3720c15dff00bb550b2697","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@umn.edu","name":"Emma Goldberg"},"message":"Fix to check.states if all states are uncertain.","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/af9d25f3eaddf32d4e3720c15dff00bb550b2697"},{"sha":"6facb0007c49199fced5e7d0924893a17883ee4a","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@umn.edu","name":"Emma Goldberg"},"message":"Merge branch 'multifix' into mkn-unknown\n\nConflicts:\n\tR/check.R","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/6facb0007c49199fced5e7d0924893a17883ee4a"},{"sha":"72107861e83b3f675e2fa3238ea10f3a5760e608","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@umn.edu","name":"Emma Goldberg"},"message":"Merge branch 'multimk' into mkn-unknown","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/72107861e83b3f675e2fa3238ea10f3a5760e608"},{"sha":"0f14575b20b91ec758cf847c3089832125ff0f24","author":{"email":"135b0779d467f260c6535a2a518a834da6ada076@umn.edu","name":"Emma Goldberg"},"message":"Merge branch 'eegfix' into mkn-unknown","distinct":true,"url":"https://api.github.com/repos/eeg/diversitree/commits/0f14575b20b91ec758cf847c3089832125ff0f24"}]}