{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/141","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/141/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/141/comments","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/141/events","html_url":"https://github.com/galaxyproject/tools-iuc/pull/141","id":76147142,"number":141,"title":"JBrowse Update","user":{"login":"erasche","id":458683,"avatar_url":"https://avatars.githubusercontent.com/u/458683?v=3","gravatar_id":"","url":"https://api.github.com/users/erasche","html_url":"https://github.com/erasche","followers_url":"https://api.github.com/users/erasche/followers","following_url":"https://api.github.com/users/erasche/following{/other_user}","gists_url":"https://api.github.com/users/erasche/gists{/gist_id}","starred_url":"https://api.github.com/users/erasche/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/erasche/subscriptions","organizations_url":"https://api.github.com/users/erasche/orgs","repos_url":"https://api.github.com/users/erasche/repos","events_url":"https://api.github.com/users/erasche/events{/privacy}","received_events_url":"https://api.github.com/users/erasche/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/labels/enhancement","name":"enhancement","color":"84b6eb"},{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/labels/reviewer%20needed","name":"reviewer needed","color":"eb6420"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":8,"created_at":"2015-05-13T22:29:51Z","updated_at":"2015-05-23T16:03:37Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/141","html_url":"https://github.com/galaxyproject/tools-iuc/pull/141","diff_url":"https://github.com/galaxyproject/tools-iuc/pull/141.diff","patch_url":"https://github.com/galaxyproject/tools-iuc/pull/141.patch"},"body":"## New Features\r\n\r\n- [x] bam\r\n- [x] [auto-generated](http://gmod.org/wiki/JBrowse_Configuration_Guide#SNPCoverage) SNP from BAM\r\n- [x] bigwig\r\n- [x] bigwig options like XY vs Density, display of variance_band\r\n- [x] bigwig options like min, max\r\n- [x] vcf\r\n- [x] blast XML\r\n\r\n## Preview:\r\n\r\n[Visualize ALL the data](https://cpt.tamu.edu/dot/jb/w/?loc=Merlin%3A1..24858&tracks=DNA%2C89b4b9280761aacde16640100508bde7%2C6173b502210234b165b8b3d2d14de5a3%2C4f7b543c8c801f07c0a17cb2660158ca%2C746f43b6c68cd47ff74ac2e18f623953%2Caf15404c6dd609d3861ff788b3b2acc3%2Ce916ccc3d8307099bbb569a15258a515_autosnp%2Ce916ccc3d8307099bbb569a15258a515)\r\n\r\n## Questions:\r\n\r\n- [x] is it OK to run bgzip/tabix on vcf data, or is there another way I should be accessing that? (Yes)\r\n- [x] should I expose colouring options? Isn't there a new UI element for colours? (Not yet)\r\n- [x] should I re-add wig support? I removed it in lieu of bigWig only (No)\r\n- [x] should I support pre-set min/max values for BigWig data (normally it auto-scales)? (Yes)\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/104917440","html_url":"https://github.com/galaxyproject/tools-iuc/pull/141#issuecomment-104917440","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/141","id":104917440,"user":{"login":"bgruening","id":469983,"avatar_url":"https://avatars.githubusercontent.com/u/469983?v=3","gravatar_id":"","url":"https://api.github.com/users/bgruening","html_url":"https://github.com/bgruening","followers_url":"https://api.github.com/users/bgruening/followers","following_url":"https://api.github.com/users/bgruening/following{/other_user}","gists_url":"https://api.github.com/users/bgruening/gists{/gist_id}","starred_url":"https://api.github.com/users/bgruening/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bgruening/subscriptions","organizations_url":"https://api.github.com/users/bgruening/orgs","repos_url":"https://api.github.com/users/bgruening/repos","events_url":"https://api.github.com/users/bgruening/events{/privacy}","received_events_url":"https://api.github.com/users/bgruening/received_events","type":"User","site_admin":false},"created_at":"2015-05-23T16:03:37Z","updated_at":"2015-05-23T16:03:37Z","body":"@erasche;\r\n* you need to add BCBio & biopython, samtools (aka tabix, bgzip), perl? as dependency\r\n* I would put `blastxml_to_gapped_gff3` into a separate repository\r\n\r\nSee my other small comments inline."}}