{"action":"created","issue":{"url":"https://api.github.com/repos/choderalab/yank/issues/156","labels_url":"https://api.github.com/repos/choderalab/yank/issues/156/labels{/name}","comments_url":"https://api.github.com/repos/choderalab/yank/issues/156/comments","events_url":"https://api.github.com/repos/choderalab/yank/issues/156/events","html_url":"https://github.com/choderalab/yank/issues/156","id":54107144,"number":156,"title":"Online analysis seems to produce exception","user":{"login":"pgrinaway","id":4674712,"avatar_url":"https://avatars.githubusercontent.com/u/4674712?v=3","gravatar_id":"","url":"https://api.github.com/users/pgrinaway","html_url":"https://github.com/pgrinaway","followers_url":"https://api.github.com/users/pgrinaway/followers","following_url":"https://api.github.com/users/pgrinaway/following{/other_user}","gists_url":"https://api.github.com/users/pgrinaway/gists{/gist_id}","starred_url":"https://api.github.com/users/pgrinaway/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pgrinaway/subscriptions","organizations_url":"https://api.github.com/users/pgrinaway/orgs","repos_url":"https://api.github.com/users/pgrinaway/repos","events_url":"https://api.github.com/users/pgrinaway/events{/privacy}","received_events_url":"https://api.github.com/users/pgrinaway/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/choderalab/yank/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":{"login":"jchodera","id":3656088,"avatar_url":"https://avatars.githubusercontent.com/u/3656088?v=3","gravatar_id":"","url":"https://api.github.com/users/jchodera","html_url":"https://github.com/jchodera","followers_url":"https://api.github.com/users/jchodera/followers","following_url":"https://api.github.com/users/jchodera/following{/other_user}","gists_url":"https://api.github.com/users/jchodera/gists{/gist_id}","starred_url":"https://api.github.com/users/jchodera/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jchodera/subscriptions","organizations_url":"https://api.github.com/users/jchodera/orgs","repos_url":"https://api.github.com/users/jchodera/repos","events_url":"https://api.github.com/users/jchodera/events{/privacy}","received_events_url":"https://api.github.com/users/jchodera/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/choderalab/yank/milestones/1","labels_url":"https://api.github.com/repos/choderalab/yank/milestones/1/labels","id":477995,"number":1,"title":"yank 1.0","description":null,"creator":{"login":"jchodera","id":3656088,"avatar_url":"https://avatars.githubusercontent.com/u/3656088?v=3","gravatar_id":"","url":"https://api.github.com/users/jchodera","html_url":"https://github.com/jchodera","followers_url":"https://api.github.com/users/jchodera/followers","following_url":"https://api.github.com/users/jchodera/following{/other_user}","gists_url":"https://api.github.com/users/jchodera/gists{/gist_id}","starred_url":"https://api.github.com/users/jchodera/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jchodera/subscriptions","organizations_url":"https://api.github.com/users/jchodera/orgs","repos_url":"https://api.github.com/users/jchodera/repos","events_url":"https://api.github.com/users/jchodera/events{/privacy}","received_events_url":"https://api.github.com/users/jchodera/received_events","type":"User","site_admin":false},"open_issues":52,"closed_issues":20,"state":"open","created_at":"2013-11-07T21:09:29Z","updated_at":"2015-01-23T02:57:07Z","due_on":null,"closed_at":null},"comments":2,"created_at":"2015-01-12T21:10:52Z","updated_at":"2015-01-23T02:57:07Z","closed_at":"2015-01-23T02:57:07Z","body":"Raising a new issue instead of tacking on to #81, but when I specify the `-o` option for `yank setup` I get an error about not finding the `.nc` files (though maybe we just don't want to support this option for the setup...). However, when I use it as an option on `yank run` I get this:\r\n```\r\nTraceback (most recent call last):\r\n  File \"/Users/grinawap/yanktest2/bin/yank\", line 9, in <module>\r\n    load_entry_point('yank==0.9.0', 'console_scripts', 'yank')()\r\n  File \"/Users/grinawap/yanktest2/lib/python2.7/site-packages/yank-0.9.0-py2.7.egg/yank/cli.py\", line 98, in main\r\n    dispatched = getattr(commands, command).dispatch(args)\r\n  File \"/Users/grinawap/yanktest2/lib/python2.7/site-packages/yank-0.9.0-py2.7.egg/yank/commands/run.py\", line 61, in dispatch\r\n    yank.run(mpicomm, options=options)\r\n  File \"/Users/grinawap/yanktest2/lib/python2.7/site-packages/yank-0.9.0-py2.7.egg/yank/yank.py\", line 404, in run\r\n    simulation.run(niterations_to_run=niterations)\r\n  File \"/Users/grinawap/yanktest2/lib/python2.7/site-packages/yank-0.9.0-py2.7.egg/yank/repex.py\", line 950, in run\r\n    self._analysis()\r\n  File \"/Users/grinawap/yanktest2/lib/python2.7/site-packages/yank-0.9.0-py2.7.egg/yank/repex.py\", line 2386, in _analysis\r\n    indices = t0 + timeseries.subsampleCorrelatedData(u_n[t0:], g=g) # TODO: This could be computed as part of 'timeseries.detectEquilibration()'\r\nTypeError: unsupported operand type(s) for +: 'int' and 'list'\r\n```\r\nafter the second iteration. "},"comment":{"url":"https://api.github.com/repos/choderalab/yank/issues/comments/71140343","html_url":"https://github.com/choderalab/yank/issues/156#issuecomment-71140343","issue_url":"https://api.github.com/repos/choderalab/yank/issues/156","id":71140343,"user":{"login":"jchodera","id":3656088,"avatar_url":"https://avatars.githubusercontent.com/u/3656088?v=3","gravatar_id":"","url":"https://api.github.com/users/jchodera","html_url":"https://github.com/jchodera","followers_url":"https://api.github.com/users/jchodera/followers","following_url":"https://api.github.com/users/jchodera/following{/other_user}","gists_url":"https://api.github.com/users/jchodera/gists{/gist_id}","starred_url":"https://api.github.com/users/jchodera/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jchodera/subscriptions","organizations_url":"https://api.github.com/users/jchodera/orgs","repos_url":"https://api.github.com/users/jchodera/repos","events_url":"https://api.github.com/users/jchodera/events{/privacy}","received_events_url":"https://api.github.com/users/jchodera/received_events","type":"User","site_admin":false},"created_at":"2015-01-23T02:57:07Z","updated_at":"2015-01-23T02:57:07Z","body":"Addressed in #204."}}