{"push_id":859524187,"size":25,"distinct_size":25,"ref":"refs/heads/cython-xdrlib","head":"54d23305d0c2212b2b0d36ea06e807dd7ed46f31","before":"c0bf707e347821282940fa266826d20e03f407e0","commits":[{"sha":"ad41de8a85d37b9f8e18008b52218c0ee0c518ba","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Fix bug in coordinates base test\n\nI didn't notice that before since we only test the xyz-reader\nright now which doesn't trigger any of these bugs.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/ad41de8a85d37b9f8e18008b52218c0ee0c518ba"},{"sha":"d66927039e1357da34dfc10631d66254c2c2fff7","author":{"email":"be140ea7830acd63f99635dfdc0138aed28eba83@users.noreply.github.com","name":"kain88-de"},"message":"Merge pull request #526 from kain88-de/fix-test-bug\n\nFix bug in coordinates base test","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/d66927039e1357da34dfc10631d66254c2c2fff7"},{"sha":"46c155a29293710dd8dd7aea4d70eba51f1bc85c","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Remove old XDR code\n\nRefactoring this is not really worth it. I'll start the xdr\ninterface from scratch.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/46c155a29293710dd8dd7aea4d70eba51f1bc85c"},{"sha":"e3c8312db255c3bdc9083888c2e80cd8ceff8af1","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Add currentversion of xdrlib\n\nThis is the newest version accessible from the GROMACS\ndevs.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/e3c8312db255c3bdc9083888c2e80cd8ceff8af1"},{"sha":"3435f532c44ca7d7e15d3a88824cb55e82421f0a","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Add XTCfile object module\n\nThis adds a clean wrapper for xtc functions in the xdrlib of GROMACS.\nThe object acts similar to a normal file object in python. This should\nbe the a clean wrap and enable to use xtc files with little fuss inside\nof mdanalysis. It currently is still somewhat slow. After fixes edges\nwith the API and integrating it into a Reader class I'll have a look\ninto optimizing it.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/3435f532c44ca7d7e15d3a88824cb55e82421f0a"},{"sha":"8e0281096f30102c02c7d35c6f2fab878a31e0dc","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Add test for new XTCFile object\n\nThis adds a comprehensive set of tests for the new XTCFile class.\nIt tests most error conditions that are easy to generate and comes\nwith it's own set of small test files. Even though I'm doing some IO\neverything runs very fast because the files involved are small.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/8e0281096f30102c02c7d35c6f2fab878a31e0dc"},{"sha":"5af98127a9a7733b65efba4d2d467111f724d821","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Add TRRFile module\n\nThis is a copy of the xtc module enabling to use trr files.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/5af98127a9a7733b65efba4d2d467111f724d821"},{"sha":"e31c2ca7ee2800fa20847b75b8ed9c470f8237f6","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Add tests for trr module","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/e31c2ca7ee2800fa20847b75b8ed9c470f8237f6"},{"sha":"490f85baa18464b4094c9cfc055e5889709da8e0","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Readd XTC-Reader/Writer class\n\nThis is now a 'simple' wrapper around the xtcfile object.\nThat simplifies the code quite a lot and it looks like we have a proper\nseperation of responsibilities in the code","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/490f85baa18464b4094c9cfc055e5889709da8e0"},{"sha":"bf4c2216dfe5c6eb99feb9878728c7a263db925b","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Readd the TRR-Reader/Writer classes\n\nIt may not be pretty but it works","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/bf4c2216dfe5c6eb99feb9878728c7a263db925b"},{"sha":"defdde9c477a0618c0b5be0bfb9059685e25964b","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Fix test cases, Tmp delete later\n\nSome can be deleted others are temporaty disabled.\nDisabled because I don't know or because XTC/TRR can't\ndo some things right now that it used to be able to do.","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/defdde9c477a0618c0b5be0bfb9059685e25964b"},{"sha":"7736d8f813713beb29a972d9357542f7f52e1e76","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"add new xtc test-data","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/7736d8f813713beb29a972d9357542f7f52e1e76"},{"sha":"e355c55bf57d28d2aa343a37ed4cecfc79ca77b2","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"test new xtc lib with base reader/writer test","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/e355c55bf57d28d2aa343a37ed4cecfc79ca77b2"},{"sha":"616c8374436d1348e0f177db4bdc51f59ce494c2","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Test TRR with new reader tests","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/616c8374436d1348e0f177db4bdc51f59ce494c2"},{"sha":"9e3a183b366be2cf64ecf87b5bc913af3dbeedc5","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"fix assert_timestep_allclose\n\nI didn't print values where I should have done so","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/9e3a183b366be2cf64ecf87b5bc913af3dbeedc5"},{"sha":"1ce8a16fb264b233c31543f0b23a178fd6c685e0","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Save unitcell when writing trr","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/1ce8a16fb264b233c31543f0b23a178fd6c685e0"},{"sha":"87ddc1498b260247c46abe7f0cb22ad0200918cc","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"Check that box in trr is only close\n\nand not completely the same. This is a small sanity check\nthat people will use the same data","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/87ddc1498b260247c46abe7f0cb22ad0200918cc"},{"sha":"d69e8c89e3a3d2de3b6ea9c1a430d33dc2f969f0","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"add trr test data","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/d69e8c89e3a3d2de3b6ea9c1a430d33dc2f969f0"},{"sha":"16971f14ad633897daeb437c19ff5b953509fae4","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"WIP! test function to create test-data","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/16971f14ad633897daeb437c19ff5b953509fae4"},{"sha":"2cb7bf1b3d51dcdc12811c8d0936ab5cc18589e4","author":{"email":"76f689b4e5f462298e6fb53c0db5a3b315c50ffc@gmx.de","name":"Max Linke"},"message":"fix natoms writer and inplace dimensions in xtc","distinct":true,"url":"https://api.github.com/repos/kain88-de/mdanalysis/commits/2cb7bf1b3d51dcdc12811c8d0936ab5cc18589e4"}]}