{"action":"created","issue":{"url":"https://api.github.com/repos/Blahah/transrate/issues/162","labels_url":"https://api.github.com/repos/Blahah/transrate/issues/162/labels{/name}","comments_url":"https://api.github.com/repos/Blahah/transrate/issues/162/comments","events_url":"https://api.github.com/repos/Blahah/transrate/issues/162/events","html_url":"https://github.com/Blahah/transrate/issues/162","id":109485943,"number":162,"title":"interleaved reads","user":{"login":"macmanes","id":164752,"avatar_url":"https://avatars.githubusercontent.com/u/164752?v=3","gravatar_id":"","url":"https://api.github.com/users/macmanes","html_url":"https://github.com/macmanes","followers_url":"https://api.github.com/users/macmanes/followers","following_url":"https://api.github.com/users/macmanes/following{/other_user}","gists_url":"https://api.github.com/users/macmanes/gists{/gist_id}","starred_url":"https://api.github.com/users/macmanes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/macmanes/subscriptions","organizations_url":"https://api.github.com/users/macmanes/orgs","repos_url":"https://api.github.com/users/macmanes/repos","events_url":"https://api.github.com/users/macmanes/events{/privacy}","received_events_url":"https://api.github.com/users/macmanes/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2015-10-02T12:54:21Z","updated_at":"2015-11-01T14:10:48Z","closed_at":null,"body":"Can we have an option of inputting interleaved reads, like from khmer/seqtk? Not sure if SNAP/salmon can handle this..\r\n\r\n```\r\ntransrate --assembly bwa.Trinity.fasta --interleaved Schizo.50M.interleaved.fq.gz --threads 16\r\n```"},"comment":{"url":"https://api.github.com/repos/Blahah/transrate/issues/comments/152828669","html_url":"https://github.com/Blahah/transrate/issues/162#issuecomment-152828669","issue_url":"https://api.github.com/repos/Blahah/transrate/issues/162","id":152828669,"user":{"login":"macmanes","id":164752,"avatar_url":"https://avatars.githubusercontent.com/u/164752?v=3","gravatar_id":"","url":"https://api.github.com/users/macmanes","html_url":"https://github.com/macmanes","followers_url":"https://api.github.com/users/macmanes/followers","following_url":"https://api.github.com/users/macmanes/following{/other_user}","gists_url":"https://api.github.com/users/macmanes/gists{/gist_id}","starred_url":"https://api.github.com/users/macmanes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/macmanes/subscriptions","organizations_url":"https://api.github.com/users/macmanes/orgs","repos_url":"https://api.github.com/users/macmanes/repos","events_url":"https://api.github.com/users/macmanes/events{/privacy}","received_events_url":"https://api.github.com/users/macmanes/received_events","type":"User","site_admin":false},"created_at":"2015-11-01T14:10:48Z","updated_at":"2015-11-01T14:10:48Z","body":"yes, `--interleaved` is what I was thinking about."}}