{"action":"created","issue":{"url":"https://api.github.com/repos/bhmm/bhmm-force-spectroscopy-manuscript/issues/40","labels_url":"https://api.github.com/repos/bhmm/bhmm-force-spectroscopy-manuscript/issues/40/labels{/name}","comments_url":"https://api.github.com/repos/bhmm/bhmm-force-spectroscopy-manuscript/issues/40/comments","events_url":"https://api.github.com/repos/bhmm/bhmm-force-spectroscopy-manuscript/issues/40/events","html_url":"https://github.com/bhmm/bhmm-force-spectroscopy-manuscript/issues/40","id":77448491,"number":40,"title":"Refactor BHMM core into separate repo from spectroscopic analysis using BHMMs?","user":{"login":"jchodera","id":3656088,"avatar_url":"https://avatars.githubusercontent.com/u/3656088?v=3","gravatar_id":"","url":"https://api.github.com/users/jchodera","html_url":"https://github.com/jchodera","followers_url":"https://api.github.com/users/jchodera/followers","following_url":"https://api.github.com/users/jchodera/following{/other_user}","gists_url":"https://api.github.com/users/jchodera/gists{/gist_id}","starred_url":"https://api.github.com/users/jchodera/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jchodera/subscriptions","organizations_url":"https://api.github.com/users/jchodera/orgs","repos_url":"https://api.github.com/users/jchodera/repos","events_url":"https://api.github.com/users/jchodera/events{/privacy}","received_events_url":"https://api.github.com/users/jchodera/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":22,"created_at":"2015-05-18T01:16:31Z","updated_at":"2015-07-09T12:20:34Z","closed_at":null,"body":"It sounds like @franknoe would like to use the BHMM model estimation core in multiple projects that have nothing to do with spectroscopic analysis, but are instead pure machine learning projects.\r\n\r\nThe best way to do this is to separate out the BHMM model estimation core into a separate repository (or extract the single-molecule spectroscopy parts into another project).  \r\n\r\nThis could optimally be made compatible with [scikit-learn](http://scikit-learn.org/stable/), which seems to be the modern way new machine learning codes are written."},"comment":{"url":"https://api.github.com/repos/bhmm/bhmm-force-spectroscopy-manuscript/issues/comments/119939302","html_url":"https://github.com/bhmm/bhmm-force-spectroscopy-manuscript/issues/40#issuecomment-119939302","issue_url":"https://api.github.com/repos/bhmm/bhmm-force-spectroscopy-manuscript/issues/40","id":119939302,"user":{"login":"franknoe","id":6495810,"avatar_url":"https://avatars.githubusercontent.com/u/6495810?v=3","gravatar_id":"","url":"https://api.github.com/users/franknoe","html_url":"https://github.com/franknoe","followers_url":"https://api.github.com/users/franknoe/followers","following_url":"https://api.github.com/users/franknoe/following{/other_user}","gists_url":"https://api.github.com/users/franknoe/gists{/gist_id}","starred_url":"https://api.github.com/users/franknoe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/franknoe/subscriptions","organizations_url":"https://api.github.com/users/franknoe/orgs","repos_url":"https://api.github.com/users/franknoe/repos","events_url":"https://api.github.com/users/franknoe/events{/privacy}","received_events_url":"https://api.github.com/users/franknoe/received_events","type":"User","site_admin":false},"created_at":"2015-07-09T12:20:34Z","updated_at":"2015-07-09T12:20:34Z","body":"Yes, sure. Thanks a lot for your help.\n\nAm 09/07/15 um 14:17 schrieb John Chodera:\n>\n> OK, travis build is working now (though we will have to see if it \n> passes) and conda recipe for 0.4.0 created. Will update soon.\n>\n> We have to move issues over to the |bhmm| repo manually. Can you guys \n> carry over any important issues with TODOs not related to force \n> spectroscopy?\n>\n> —\n> Reply to this email directly or view it on GitHub \n> <https://github.com/bhmm/bhmm-force-spectroscopy-manuscript/issues/40#issuecomment-119936939>.\n>\n\n\n-- \n\n----------------------------------------------\nProf. Dr. Frank Noe\nHead of Computational Molecular Biology group\nFreie Universitaet Berlin\n\nPhone: (+49) (0)30 838 75354\nWeb:   research.franknoe.de\nMail:  Arnimallee 6, 14195 Berlin, Germany\n----------------------------------------------\n\n"}}