{"action":"created","issue":{"url":"https://api.github.com/repos/arq5x/gemini/issues/393","labels_url":"https://api.github.com/repos/arq5x/gemini/issues/393/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/gemini/issues/393/comments","events_url":"https://api.github.com/repos/arq5x/gemini/issues/393/events","html_url":"https://github.com/arq5x/gemini/issues/393","id":62429710,"number":393,"title":"create docker container with all deps and data pre-installed","user":{"login":"brentp","id":1739,"avatar_url":"https://avatars.githubusercontent.com/u/1739?v=3","gravatar_id":"","url":"https://api.github.com/users/brentp","html_url":"https://github.com/brentp","followers_url":"https://api.github.com/users/brentp/followers","following_url":"https://api.github.com/users/brentp/following{/other_user}","gists_url":"https://api.github.com/users/brentp/gists{/gist_id}","starred_url":"https://api.github.com/users/brentp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brentp/subscriptions","organizations_url":"https://api.github.com/users/brentp/orgs","repos_url":"https://api.github.com/users/brentp/repos","events_url":"https://api.github.com/users/brentp/events{/privacy}","received_events_url":"https://api.github.com/users/brentp/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-03-17T15:29:14Z","updated_at":"2015-03-17T15:52:53Z","closed_at":null,"body":"To ease use, it would be nice to have a docker container. Things to address.\r\n\r\n- [ ] instructions for installing docker and loading VCF from local file system\r\n- [ ] can docker work without sudo? (see: http://askubuntu.com/questions/477551/how-can-i-use-docker-without-sudo ... and problems: https://github.com/subuser-security/subuser/issues/131, might be resolved in recent version: https://github.com/docker/docker/issues/3124)\r\n- [ ] will dockerhub host a large image?\r\n\r\nthis would also make a portable and shareable analysis environment. \r\n\r\n@chapmanb @roryk I know you have thought about these, any further things to consider?"},"comment":{"url":"https://api.github.com/repos/arq5x/gemini/issues/comments/82431255","html_url":"https://github.com/arq5x/gemini/issues/393#issuecomment-82431255","issue_url":"https://api.github.com/repos/arq5x/gemini/issues/393","id":82431255,"user":{"login":"brentp","id":1739,"avatar_url":"https://avatars.githubusercontent.com/u/1739?v=3","gravatar_id":"","url":"https://api.github.com/users/brentp","html_url":"https://github.com/brentp","followers_url":"https://api.github.com/users/brentp/followers","following_url":"https://api.github.com/users/brentp/following{/other_user}","gists_url":"https://api.github.com/users/brentp/gists{/gist_id}","starred_url":"https://api.github.com/users/brentp/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brentp/subscriptions","organizations_url":"https://api.github.com/users/brentp/orgs","repos_url":"https://api.github.com/users/brentp/repos","events_url":"https://api.github.com/users/brentp/events{/privacy}","received_events_url":"https://api.github.com/users/brentp/received_events","type":"User","site_admin":false},"created_at":"2015-03-17T15:52:53Z","updated_at":"2015-03-17T15:52:53Z","body":"Good thoughts. I'd like to have the data inside so it's a single download to start running gemini. The data on the image should be ~3GB or so. The issue you link mentions a 5GB hard-limit and that most of the problems are on push. I would check to see if pull is more reliable. I guess we would also create an image with everything but dbsnp and 1000G, that would remove the majority of the data from the image.\r\n"}}