{"action":"published","release":{"url":"https://api.github.com/repos/linneas/condetri/releases/1067350","assets_url":"https://api.github.com/repos/linneas/condetri/releases/1067350/assets","upload_url":"https://uploads.github.com/repos/linneas/condetri/releases/1067350/assets{?name}","html_url":"https://github.com/linneas/condetri/releases/tag/v2.1","id":1067350,"tag_name":"v2.1","target_commitish":"master","name":"ConDeTri v2.1","draft":false,"author":{"login":"linneas","id":11454758,"avatar_url":"https://avatars.githubusercontent.com/u/11454758?v=3","gravatar_id":"","url":"https://api.github.com/users/linneas","html_url":"https://github.com/linneas","followers_url":"https://api.github.com/users/linneas/followers","following_url":"https://api.github.com/users/linneas/following{/other_user}","gists_url":"https://api.github.com/users/linneas/gists{/gist_id}","starred_url":"https://api.github.com/users/linneas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/linneas/subscriptions","organizations_url":"https://api.github.com/users/linneas/orgs","repos_url":"https://api.github.com/users/linneas/repos","events_url":"https://api.github.com/users/linneas/events{/privacy}","received_events_url":"https://api.github.com/users/linneas/received_events","type":"User","site_admin":false},"prerelease":false,"created_at":"2015-03-19T07:46:15Z","published_at":"2015-03-19T07:48:41Z","assets":[],"tarball_url":"https://api.github.com/repos/linneas/condetri/tarball/v2.1","zipball_url":"https://api.github.com/repos/linneas/condetri/zipball/v2.1","body":"Added three new parameters (otherwise no change from v2.0)\r\n\r\n-lfrac=[0,1] [default=0]\r\nA \"frac\" parameter for low quality reads (lower than lq): \"the maximum fraction of low quality bases\". In older versions, reads were immediately trashed if a single base had a quality lower than lq, but for some applications one or a few low quality bases is acceptable. For example set -lfrac to 0.03 to save reads with up to 3 low quality bases, if original read length is 100bp. (The fraction is calculated on the already trimmed read lengths). -lfrac is by default set to 0 (i.e. not used). If -lfrac is invoked, it suppresses the demand that no bases can be lower than -lq. \r\n\r\n-pb=fa|fq [default: not used]\r\nA flag for printing \"bad\" (low quality) reads that did not pass the trimming and filtering. Prints either as fasta (use \"fa\") or fastq (use \"fq\"). Can be used for example investigation of quality patterns.\r\n\r\n-q33\r\nA new help flag, works as the -q parameter: prints a scoring table with ASCII characters, scores and error probability but for the 33 offset (instead of the -q flag's 64 offset).\r\nIllumina has from version 1.8+ gone back to use the Sanger standard with 33 offset. Note that ConDeTri still has offset 64 as default - set the -sc=33 for the new Illumina data.\r\n\r\nVersion from March 2012"}}