{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/kineticsTools/issues/7","labels_url":"https://api.github.com/repos/PacificBiosciences/kineticsTools/issues/7/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/kineticsTools/issues/7/comments","events_url":"https://api.github.com/repos/PacificBiosciences/kineticsTools/issues/7/events","html_url":"https://github.com/PacificBiosciences/kineticsTools/issues/7","id":81232397,"number":7,"title":"ipdsummary for target regions","user":{"login":"guleiathms","id":12107732,"avatar_url":"https://avatars.githubusercontent.com/u/12107732?v=3","gravatar_id":"","url":"https://api.github.com/users/guleiathms","html_url":"https://github.com/guleiathms","followers_url":"https://api.github.com/users/guleiathms/followers","following_url":"https://api.github.com/users/guleiathms/following{/other_user}","gists_url":"https://api.github.com/users/guleiathms/gists{/gist_id}","starred_url":"https://api.github.com/users/guleiathms/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/guleiathms/subscriptions","organizations_url":"https://api.github.com/users/guleiathms/orgs","repos_url":"https://api.github.com/users/guleiathms/repos","events_url":"https://api.github.com/users/guleiathms/events{/privacy}","received_events_url":"https://api.github.com/users/guleiathms/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-05-27T02:20:43Z","updated_at":"2015-05-27T16:29:45Z","closed_at":null,"body":"I found ipdsummary is very slow in some part of chromosomes in hg19. So I don't want to run the ipdsummary for the whole chromosome. \r\nI wonder that is there a way that ipdsummary only does the calculations in the regions I specified?\r\nThanks.  "},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/kineticsTools/issues/comments/105985545","html_url":"https://github.com/PacificBiosciences/kineticsTools/issues/7#issuecomment-105985545","issue_url":"https://api.github.com/repos/PacificBiosciences/kineticsTools/issues/7","id":105985545,"user":{"login":"mseetin","id":10211134,"avatar_url":"https://avatars.githubusercontent.com/u/10211134?v=3","gravatar_id":"","url":"https://api.github.com/users/mseetin","html_url":"https://github.com/mseetin","followers_url":"https://api.github.com/users/mseetin/followers","following_url":"https://api.github.com/users/mseetin/following{/other_user}","gists_url":"https://api.github.com/users/mseetin/gists{/gist_id}","starred_url":"https://api.github.com/users/mseetin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mseetin/subscriptions","organizations_url":"https://api.github.com/users/mseetin/orgs","repos_url":"https://api.github.com/users/mseetin/repos","events_url":"https://api.github.com/users/mseetin/events{/privacy}","received_events_url":"https://api.github.com/users/mseetin/received_events","type":"User","site_admin":false},"created_at":"2015-05-27T16:29:45Z","updated_at":"2015-05-27T16:29:45Z","body":"Have you tried creating a new reference from a fasta file that only has the regions of the chromosome you care about and using that as the reference to which your reads get mapped?"}}