{"action":"created","issue":{"url":"https://api.github.com/repos/sys-bio/roadrunner/issues/211","labels_url":"https://api.github.com/repos/sys-bio/roadrunner/issues/211/labels{/name}","comments_url":"https://api.github.com/repos/sys-bio/roadrunner/issues/211/comments","events_url":"https://api.github.com/repos/sys-bio/roadrunner/issues/211/events","html_url":"https://github.com/sys-bio/roadrunner/issues/211","id":109533309,"number":211,"title":"Conserved Moieties Default Behavior","user":{"login":"0u812","id":7402146,"avatar_url":"https://avatars.githubusercontent.com/u/7402146?v=3","gravatar_id":"","url":"https://api.github.com/users/0u812","html_url":"https://github.com/0u812","followers_url":"https://api.github.com/users/0u812/followers","following_url":"https://api.github.com/users/0u812/following{/other_user}","gists_url":"https://api.github.com/users/0u812/gists{/gist_id}","starred_url":"https://api.github.com/users/0u812/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/0u812/subscriptions","organizations_url":"https://api.github.com/users/0u812/orgs","repos_url":"https://api.github.com/users/0u812/repos","events_url":"https://api.github.com/users/0u812/events{/privacy}","received_events_url":"https://api.github.com/users/0u812/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":6,"created_at":"2015-10-02T17:15:51Z","updated_at":"2015-10-02T18:42:26Z","closed_at":"2015-10-02T18:31:16Z","body":"I switched the default behavior to have conserved moieties enabled by default a few weeks ago, but I'm not sure it's the best thing to do. I just found out the hard way that you can't have events and conserved moieties enabled at the same time. Maybe I can just disable conserved moieties for models with events in them. Example (please excuse the hacky model):\r\n```\r\nimport tellurium as te\r\n\r\nm = te.loada('''\r\nx ->  ; k*x\r\n  -> t; 1\r\n\r\nk = 0.1\r\nx=10\r\n\r\nat t>7: x=10, t=t-24;\r\n''')\r\n\r\nr = m.simulate(0,50,50)\r\nprint(r)\r\nm.plot()\r\n```\r\n\r\nOutput:\r\n```\r\nRuntimeError: Cannot perform moeity conversion when floating species are have events. The floating species, t has event _E0.\r\n To disable conserved moeity conversion, blah blah blah...\r\n```\r\n\r\n@hsauro, what do you think?\r\n\r\nBtw I'm also going to fix the \"are have events\" error message."},"comment":{"url":"https://api.github.com/repos/sys-bio/roadrunner/issues/comments/145120216","html_url":"https://github.com/sys-bio/roadrunner/issues/211#issuecomment-145120216","issue_url":"https://api.github.com/repos/sys-bio/roadrunner/issues/211","id":145120216,"user":{"login":"hsauro","id":1054990,"avatar_url":"https://avatars.githubusercontent.com/u/1054990?v=3","gravatar_id":"","url":"https://api.github.com/users/hsauro","html_url":"https://github.com/hsauro","followers_url":"https://api.github.com/users/hsauro/followers","following_url":"https://api.github.com/users/hsauro/following{/other_user}","gists_url":"https://api.github.com/users/hsauro/gists{/gist_id}","starred_url":"https://api.github.com/users/hsauro/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hsauro/subscriptions","organizations_url":"https://api.github.com/users/hsauro/orgs","repos_url":"https://api.github.com/users/hsauro/repos","events_url":"https://api.github.com/users/hsauro/events{/privacy}","received_events_url":"https://api.github.com/users/hsauro/received_events","type":"User","site_admin":false},"created_at":"2015-10-02T18:42:26Z","updated_at":"2015-10-02T18:42:26Z","body":"Is it possible to set configurations that last session to session other\nthan editing the conf file?\n\nH\n\nOn Fri, Oct 2, 2015 at 11:31 AM, Kyle Medley <notifications@github.com>\nwrote:\n\n> Closed #211 <https://github.com/sys-bio/roadrunner/issues/211> via 4079d95\n> <https://github.com/sys-bio/roadrunner/commit/4079d95f0358d799e0c816b62862abfe41b8e2bb>\n> .\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/sys-bio/roadrunner/issues/211#event-425571615>.\n>\n"}}