{"action":"created","issue":{"url":"https://api.github.com/repos/marcelm/cutadapt/issues/154","labels_url":"https://api.github.com/repos/marcelm/cutadapt/issues/154/labels{/name}","comments_url":"https://api.github.com/repos/marcelm/cutadapt/issues/154/comments","events_url":"https://api.github.com/repos/marcelm/cutadapt/issues/154/events","html_url":"https://github.com/marcelm/cutadapt/issues/154","id":116554703,"number":154,"title":"ImportError: _align.so: undefined symbol: PyFPE_jbuf","user":{"login":"SusanaFreitas","id":4728813,"avatar_url":"https://avatars.githubusercontent.com/u/4728813?v=3","gravatar_id":"","url":"https://api.github.com/users/SusanaFreitas","html_url":"https://github.com/SusanaFreitas","followers_url":"https://api.github.com/users/SusanaFreitas/followers","following_url":"https://api.github.com/users/SusanaFreitas/following{/other_user}","gists_url":"https://api.github.com/users/SusanaFreitas/gists{/gist_id}","starred_url":"https://api.github.com/users/SusanaFreitas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SusanaFreitas/subscriptions","organizations_url":"https://api.github.com/users/SusanaFreitas/orgs","repos_url":"https://api.github.com/users/SusanaFreitas/repos","events_url":"https://api.github.com/users/SusanaFreitas/events{/privacy}","received_events_url":"https://api.github.com/users/SusanaFreitas/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-11-12T14:06:32Z","updated_at":"2015-11-13T11:52:18Z","closed_at":"2015-11-12T22:11:32Z","body":"Hello!\r\nI am trying to use cutadapt but I still haven't managed to work around this error. As soon as I try to run the script, it stops right in the beginning with the error message:\r\n\r\nImportError: /home/bo1sdf/softwares/cutadapt-1.9/cutadapt/_align.so: undefined symbol: PyFPE_jbuf\r\n\r\nI couldn't find anywhere this error... Do you think I might be doing something wrong?\r\n\r\nThanks in advance\r\nSusana\r\n"},"comment":{"url":"https://api.github.com/repos/marcelm/cutadapt/issues/comments/156409516","html_url":"https://github.com/marcelm/cutadapt/issues/154#issuecomment-156409516","issue_url":"https://api.github.com/repos/marcelm/cutadapt/issues/154","id":156409516,"user":{"login":"SusanaFreitas","id":4728813,"avatar_url":"https://avatars.githubusercontent.com/u/4728813?v=3","gravatar_id":"","url":"https://api.github.com/users/SusanaFreitas","html_url":"https://github.com/SusanaFreitas","followers_url":"https://api.github.com/users/SusanaFreitas/followers","following_url":"https://api.github.com/users/SusanaFreitas/following{/other_user}","gists_url":"https://api.github.com/users/SusanaFreitas/gists{/gist_id}","starred_url":"https://api.github.com/users/SusanaFreitas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SusanaFreitas/subscriptions","organizations_url":"https://api.github.com/users/SusanaFreitas/orgs","repos_url":"https://api.github.com/users/SusanaFreitas/repos","events_url":"https://api.github.com/users/SusanaFreitas/events{/privacy}","received_events_url":"https://api.github.com/users/SusanaFreitas/received_events","type":"User","site_admin":false},"created_at":"2015-11-13T11:52:18Z","updated_at":"2015-11-13T11:52:18Z","body":"Dear Marcel, I am sorry about the confusion.\nI misread the instructions, in fact it says it *can *use .gz files. I did\nsome tests and I finally found the error. When putting the file extension\n.gz in the input and output files in the command line, I also added it in\nthe --discard-trimmed option (--discard-trimmed.gz) by mistake. So, when\nrunning I guess it could not find this option and showed that error...\n\nAgain, I am sorry for the mistake and thanks for the support.\n\nBest,\nSusana\n\n2015-11-12 22:11 GMT+00:00 Marcel Martin <notifications@github.com>:\n\n> It’s great you got it to work, but cutadapt *does* support compressed\n> files, as even the sentence that you quoted says (or was at least to be\n> supposed to). For the benefit of others who might see this: Compressed\n> input/output files are *not* the problem, don’t uncompress your reads\n> unnecessarily! The pasted error message is actually printed before any\n> files are even loaded, this cannot be the problem. I believe you have\n> changed something else that makes it working now.\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/marcelm/cutadapt/issues/154#issuecomment-156252099>.\n>\n"}}