{"action":"opened","issue":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/498","labels_url":"https://api.github.com/repos/GMOD/Apollo/issues/498/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/Apollo/issues/498/comments","events_url":"https://api.github.com/repos/GMOD/Apollo/issues/498/events","html_url":"https://github.com/GMOD/Apollo/issues/498","id":96914326,"number":498,"title":"if one exon overlaps a transcript should overlap and become isoform","user":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/GMOD/Apollo/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/GMOD/Apollo/labels/discussion","name":"discussion","color":"cc317c"},{"url":"https://api.github.com/repos/GMOD/Apollo/labels/WA1Bug","name":"WA1Bug","color":"f7c6c7"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/GMOD/Apollo/milestones/13","html_url":"https://github.com/GMOD/Apollo/milestones/2.0.1","labels_url":"https://api.github.com/repos/GMOD/Apollo/milestones/13/labels","id":1059255,"number":13,"title":"2.0.1","description":"","creator":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"open_issues":50,"closed_issues":10,"state":"open","created_at":"2015-04-08T21:05:39Z","updated_at":"2015-07-23T22:01:59Z","due_on":"2015-07-31T07:00:00Z","closed_at":null},"comments":0,"created_at":"2015-07-23T22:01:59Z","updated_at":"2015-07-23T22:01:59Z","closed_at":null,"body":"I would expect if you drag up a transcript where part of the CDS overlapped . . . even if only on one exon, that it is a valid isoform.  Not in WA2 . . . not in WA1 (but differently).   Also assuming that the WA2 encoding is correct, but good to verify that as well.    This data is Group 1.1 honeybee. \r\n\r\nWA2:\r\n\r\n<img width=\"307\" alt=\"screen shot 2015-07-23 at 2 53 30 pm\" src=\"https://cloud.githubusercontent.com/assets/751274/8863165/17fe8f88-314b-11e5-9963-50b9cf352ff4.png\">\r\n\r\nWA1:\r\n\r\n<img width=\"400\" alt=\"screen shot 2015-07-23 at 2 57 46 pm\" src=\"https://cloud.githubusercontent.com/assets/751274/8863182/3a99c81e-314b-11e5-9139-5b76e986cf93.png\">\r\n"}}