{"action":"created","comment":{"url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/comments/46532823","id":46532823,"diff_hunk":"@@ -10,43 +10,65 @@ other forms of microscopy.\n Supported Objects\n -----------------\n \n-In the schema there is support for the following objects:\n-\n--  Dichroic - the dichroic mirror or dichromatic beamsplitter. This is\n-   used for the primary dichroic of the instrument. Other dichroics in\n-   the excitation or emission path can be modelled with the Filter\n-   object.\n--  Filter - this object is used to represent any type of excitation\n-   filter and emission/barrier filter. It contains details of the\n-   transmittance of the filter. It can also be used to model a dichroic\n-   mirror or dichromatic beamsplitter in the excitation or emission\n-   path.\n--  FilterSet - a FilterSet belongs to an Instrument in an OME-XML file\n-   and has alongside it any Filters and Dichroics it refers to. It is\n-   designed to represent a collection of filters available on a certain\n-   instrument. It can also represent a filter cube or filter block. To\n-   represent the set of filters used to collect an image, LightPath is a\n-   better choice. FilterSet may contain zero or more excitation Filters,\n-   one Dichroic, and zero or more emission Filters. No ordering of\n-   Filters is implied. Filters and Dichroics can be reused across\n-   multiple Filter sets. It will be normal to have a single Dichroic\n-   that is usable with several Filter combinations.\n--  FilterSetRef - these are used to attach a specific filter set from an\n-   Instrument to a Channel within an Image. They allow the Filter set to\n-   be defined once in the instrument in an OME-XML file, and then used\n-   multiple times within the images.\n--  ManufacturerSpec - the Manufacturer spec is used by both Dichroic and\n-   Filter to store the Manufacturer, Model, SerialNumber and LotNumber\n-   of the optical element.\n--  FilterWheel - this is a value within a Filter used to record which\n-   holder the filter is located in. Although it is named after a wheel,\n-   it could just as easily be a filter slider or other mechanism. These\n-   holders allow any of their containing Filters to be automatically\n-   selected by the microscope control software.\n--  LightPath - the LightPath object is a child of Channel and is used to\n-   represent the collection of Dichroic and Filters used to create the\n-   Channel. FilterSet is on an Instrument granularity, LightPath on a\n-   Channel of an Image.\n+The schema supports the following objects:\n+\n+.. glossary::\n+\n+    Dichroic\n+\n+        The dichroic mirror or dichromatic beamsplitter. This is\n+        used for the primary dichroic of the instrument. Other dichroics in\n+        the excitation or emission path can be modelled with the Filter\n+        object.\n+\n+    Filter\n+\n+        This object is used to represent any type of excitation\n+        filter and emission/barrier filter. It contains details of the\n+        transmittance of the filter. It can also be used to model a dichroic\n+        mirror or dichromatic beamsplitter in the excitation or emission\n+        path.\n+\n+    FilterSet\n+\n+        A FilterSet belongs to an Instrument in an OME-XML file\n+        and has alongside it any Filters and Dichroics it refers to. It is\n+        designed to represent a collection of filters available on a certain\n+        instrument. It can also represent a filter cube or filter block. To\n+        represent the set of filters used to collect an image, LightPath is a\n+        better choice. FilterSet may contain zero or more excitation Filters,\n+        one Dichroic, and zero or more emission Filters. No ordering of\n+        Filters is implied. Filters and Dichroics can be reused across\n+        multiple Filter sets. It will be normal to have a single Dichroic\n+        that is usable with several Filter combinations.\n+\n+    FilterSetRef\n+\n+        These are used to attach a specific filter set from an\n+        Instrument to a Channel within an Image. They allow the Filter set to","path":"formats/developers/filter-and-filterset.txt","position":82,"original_position":82,"commit_id":"af20daa2e749387dfd44ab3bf7a03a48bb1bd205","original_commit_id":"af20daa2e749387dfd44ab3bf7a03a48bb1bd205","user":{"login":"mtbc","id":2630707,"avatar_url":"https://avatars.githubusercontent.com/u/2630707?v=3","gravatar_id":"","url":"https://api.github.com/users/mtbc","html_url":"https://github.com/mtbc","followers_url":"https://api.github.com/users/mtbc/followers","following_url":"https://api.github.com/users/mtbc/following{/other_user}","gists_url":"https://api.github.com/users/mtbc/gists{/gist_id}","starred_url":"https://api.github.com/users/mtbc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mtbc/subscriptions","organizations_url":"https://api.github.com/users/mtbc/orgs","repos_url":"https://api.github.com/users/mtbc/repos","events_url":"https://api.github.com/users/mtbc/events{/privacy}","received_events_url":"https://api.github.com/users/mtbc/received_events","type":"User","site_admin":false},"body":"it's both \"filter set\" and \"Filter set\"","created_at":"2015-12-03T10:06:40Z","updated_at":"2015-12-03T10:06:40Z","html_url":"https://github.com/openmicroscopy/ome-documentation/pull/1343#discussion_r46532823","pull_request_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343","_links":{"self":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/comments/46532823"},"html":{"href":"https://github.com/openmicroscopy/ome-documentation/pull/1343#discussion_r46532823"},"pull_request":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343"}}},"pull_request":{"url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343","id":52136377,"html_url":"https://github.com/openmicroscopy/ome-documentation/pull/1343","diff_url":"https://github.com/openmicroscopy/ome-documentation/pull/1343.diff","patch_url":"https://github.com/openmicroscopy/ome-documentation/pull/1343.patch","issue_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues/1343","number":1343,"state":"open","locked":false,"title":"Model samples links ","user":{"login":"hflynn","id":2368904,"avatar_url":"https://avatars.githubusercontent.com/u/2368904?v=3","gravatar_id":"","url":"https://api.github.com/users/hflynn","html_url":"https://github.com/hflynn","followers_url":"https://api.github.com/users/hflynn/followers","following_url":"https://api.github.com/users/hflynn/following{/other_user}","gists_url":"https://api.github.com/users/hflynn/gists{/gist_id}","starred_url":"https://api.github.com/users/hflynn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hflynn/subscriptions","organizations_url":"https://api.github.com/users/hflynn/orgs","repos_url":"https://api.github.com/users/hflynn/repos","events_url":"https://api.github.com/users/hflynn/events{/privacy}","received_events_url":"https://api.github.com/users/hflynn/received_events","type":"User","site_admin":false},"body":"Continues effort on #1329 \r\nRenaming of the other image files to come on a second commit but will be 403 forbidden links until new image folders under downloads are made public.","created_at":"2015-11-30T15:17:48Z","updated_at":"2015-12-03T10:06:40Z","closed_at":null,"merged_at":null,"merge_commit_sha":"106eb63a8424dd22074f5ea96759b0170602bc03","assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343/commits","review_comments_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343/comments","review_comment_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/comments{/number}","comments_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues/1343/comments","statuses_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/statuses/af20daa2e749387dfd44ab3bf7a03a48bb1bd205","head":{"label":"hflynn:sample-links","ref":"sample-links","sha":"af20daa2e749387dfd44ab3bf7a03a48bb1bd205","user":{"login":"hflynn","id":2368904,"avatar_url":"https://avatars.githubusercontent.com/u/2368904?v=3","gravatar_id":"","url":"https://api.github.com/users/hflynn","html_url":"https://github.com/hflynn","followers_url":"https://api.github.com/users/hflynn/followers","following_url":"https://api.github.com/users/hflynn/following{/other_user}","gists_url":"https://api.github.com/users/hflynn/gists{/gist_id}","starred_url":"https://api.github.com/users/hflynn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hflynn/subscriptions","organizations_url":"https://api.github.com/users/hflynn/orgs","repos_url":"https://api.github.com/users/hflynn/repos","events_url":"https://api.github.com/users/hflynn/events{/privacy}","received_events_url":"https://api.github.com/users/hflynn/received_events","type":"User","site_admin":false},"repo":{"id":5853981,"name":"ome-documentation","full_name":"hflynn/ome-documentation","owner":{"login":"hflynn","id":2368904,"avatar_url":"https://avatars.githubusercontent.com/u/2368904?v=3","gravatar_id":"","url":"https://api.github.com/users/hflynn","html_url":"https://github.com/hflynn","followers_url":"https://api.github.com/users/hflynn/followers","following_url":"https://api.github.com/users/hflynn/following{/other_user}","gists_url":"https://api.github.com/users/hflynn/gists{/gist_id}","starred_url":"https://api.github.com/users/hflynn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hflynn/subscriptions","organizations_url":"https://api.github.com/users/hflynn/orgs","repos_url":"https://api.github.com/users/hflynn/repos","events_url":"https://api.github.com/users/hflynn/events{/privacy}","received_events_url":"https://api.github.com/users/hflynn/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/hflynn/ome-documentation","description":"Sphinx-based documentation for the Open Microscopy Environment ","fork":true,"url":"https://api.github.com/repos/hflynn/ome-documentation","forks_url":"https://api.github.com/repos/hflynn/ome-documentation/forks","keys_url":"https://api.github.com/repos/hflynn/ome-documentation/keys{/key_id}","collaborators_url":"https://api.github.com/repos/hflynn/ome-documentation/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/hflynn/ome-documentation/teams","hooks_url":"https://api.github.com/repos/hflynn/ome-documentation/hooks","issue_events_url":"https://api.github.com/repos/hflynn/ome-documentation/issues/events{/number}","events_url":"https://api.github.com/repos/hflynn/ome-documentation/events","assignees_url":"https://api.github.com/repos/hflynn/ome-documentation/assignees{/user}","branches_url":"https://api.github.com/repos/hflynn/ome-documentation/branches{/branch}","tags_url":"https://api.github.com/repos/hflynn/ome-documentation/tags","blobs_url":"https://api.github.com/repos/hflynn/ome-documentation/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/hflynn/ome-documentation/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/hflynn/ome-documentation/git/refs{/sha}","trees_url":"https://api.github.com/repos/hflynn/ome-documentation/git/trees{/sha}","statuses_url":"https://api.github.com/repos/hflynn/ome-documentation/statuses/{sha}","languages_url":"https://api.github.com/repos/hflynn/ome-documentation/languages","stargazers_url":"https://api.github.com/repos/hflynn/ome-documentation/stargazers","contributors_url":"https://api.github.com/repos/hflynn/ome-documentation/contributors","subscribers_url":"https://api.github.com/repos/hflynn/ome-documentation/subscribers","subscription_url":"https://api.github.com/repos/hflynn/ome-documentation/subscription","commits_url":"https://api.github.com/repos/hflynn/ome-documentation/commits{/sha}","git_commits_url":"https://api.github.com/repos/hflynn/ome-documentation/git/commits{/sha}","comments_url":"https://api.github.com/repos/hflynn/ome-documentation/comments{/number}","issue_comment_url":"https://api.github.com/repos/hflynn/ome-documentation/issues/comments{/number}","contents_url":"https://api.github.com/repos/hflynn/ome-documentation/contents/{+path}","compare_url":"https://api.github.com/repos/hflynn/ome-documentation/compare/{base}...{head}","merges_url":"https://api.github.com/repos/hflynn/ome-documentation/merges","archive_url":"https://api.github.com/repos/hflynn/ome-documentation/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/hflynn/ome-documentation/downloads","issues_url":"https://api.github.com/repos/hflynn/ome-documentation/issues{/number}","pulls_url":"https://api.github.com/repos/hflynn/ome-documentation/pulls{/number}","milestones_url":"https://api.github.com/repos/hflynn/ome-documentation/milestones{/number}","notifications_url":"https://api.github.com/repos/hflynn/ome-documentation/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/hflynn/ome-documentation/labels{/name}","releases_url":"https://api.github.com/repos/hflynn/ome-documentation/releases{/id}","created_at":"2012-09-18T09:22:07Z","updated_at":"2014-06-18T14:24:14Z","pushed_at":"2015-12-02T17:12:24Z","git_url":"git://github.com/hflynn/ome-documentation.git","ssh_url":"git@github.com:hflynn/ome-documentation.git","clone_url":"https://github.com/hflynn/ome-documentation.git","svn_url":"https://github.com/hflynn/ome-documentation","homepage":"http://openmicroscopy.org","size":232731,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":false,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":0,"default_branch":"develop"}},"base":{"label":"openmicroscopy:develop","ref":"develop","sha":"3aae1a8678975e0d27c73cc25bf4523394cc3b6d","user":{"login":"openmicroscopy","id":975861,"avatar_url":"https://avatars.githubusercontent.com/u/975861?v=3","gravatar_id":"","url":"https://api.github.com/users/openmicroscopy","html_url":"https://github.com/openmicroscopy","followers_url":"https://api.github.com/users/openmicroscopy/followers","following_url":"https://api.github.com/users/openmicroscopy/following{/other_user}","gists_url":"https://api.github.com/users/openmicroscopy/gists{/gist_id}","starred_url":"https://api.github.com/users/openmicroscopy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/openmicroscopy/subscriptions","organizations_url":"https://api.github.com/users/openmicroscopy/orgs","repos_url":"https://api.github.com/users/openmicroscopy/repos","events_url":"https://api.github.com/users/openmicroscopy/events{/privacy}","received_events_url":"https://api.github.com/users/openmicroscopy/received_events","type":"Organization","site_admin":false},"repo":{"id":3198415,"name":"ome-documentation","full_name":"openmicroscopy/ome-documentation","owner":{"login":"openmicroscopy","id":975861,"avatar_url":"https://avatars.githubusercontent.com/u/975861?v=3","gravatar_id":"","url":"https://api.github.com/users/openmicroscopy","html_url":"https://github.com/openmicroscopy","followers_url":"https://api.github.com/users/openmicroscopy/followers","following_url":"https://api.github.com/users/openmicroscopy/following{/other_user}","gists_url":"https://api.github.com/users/openmicroscopy/gists{/gist_id}","starred_url":"https://api.github.com/users/openmicroscopy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/openmicroscopy/subscriptions","organizations_url":"https://api.github.com/users/openmicroscopy/orgs","repos_url":"https://api.github.com/users/openmicroscopy/repos","events_url":"https://api.github.com/users/openmicroscopy/events{/privacy}","received_events_url":"https://api.github.com/users/openmicroscopy/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/openmicroscopy/ome-documentation","description":"Sphinx-based documentation for the Open Microscopy Environment ","fork":false,"url":"https://api.github.com/repos/openmicroscopy/ome-documentation","forks_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/forks","keys_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/keys{/key_id}","collaborators_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/teams","hooks_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/hooks","issue_events_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues/events{/number}","events_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/events","assignees_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/assignees{/user}","branches_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/branches{/branch}","tags_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/tags","blobs_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/git/refs{/sha}","trees_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/git/trees{/sha}","statuses_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/statuses/{sha}","languages_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/languages","stargazers_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/stargazers","contributors_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/contributors","subscribers_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/subscribers","subscription_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/subscription","commits_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/commits{/sha}","git_commits_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/git/commits{/sha}","comments_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/comments{/number}","issue_comment_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues/comments{/number}","contents_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/contents/{+path}","compare_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/compare/{base}...{head}","merges_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/merges","archive_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/downloads","issues_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues{/number}","pulls_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls{/number}","milestones_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/milestones{/number}","notifications_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/labels{/name}","releases_url":"https://api.github.com/repos/openmicroscopy/ome-documentation/releases{/id}","created_at":"2012-01-17T10:20:53Z","updated_at":"2015-11-17T18:43:26Z","pushed_at":"2015-12-02T17:12:24Z","git_url":"git://github.com/openmicroscopy/ome-documentation.git","ssh_url":"git@github.com:openmicroscopy/ome-documentation.git","clone_url":"https://github.com/openmicroscopy/ome-documentation.git","svn_url":"https://github.com/openmicroscopy/ome-documentation","homepage":"http://openmicroscopy.org","size":446612,"stargazers_count":12,"watchers_count":12,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":33,"mirror_url":null,"open_issues_count":5,"forks":33,"open_issues":5,"watchers":12,"default_branch":"develop"}},"_links":{"self":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343"},"html":{"href":"https://github.com/openmicroscopy/ome-documentation/pull/1343"},"issue":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues/1343"},"comments":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/issues/1343/comments"},"review_comments":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343/comments"},"review_comment":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/pulls/1343/commits"},"statuses":{"href":"https://api.github.com/repos/openmicroscopy/ome-documentation/statuses/af20daa2e749387dfd44ab3bf7a03a48bb1bd205"}}}}