{"action":"created","issue":{"url":"https://api.github.com/repos/openmole/openmole/issues/48","labels_url":"https://api.github.com/repos/openmole/openmole/issues/48/labels{/name}","comments_url":"https://api.github.com/repos/openmole/openmole/issues/48/comments","events_url":"https://api.github.com/repos/openmole/openmole/issues/48/events","html_url":"https://github.com/openmole/openmole/issues/48","id":73929604,"number":48,"title":"No SLURM jobs are submitted when sharedDirectory is set","user":{"login":"schuhschuh","id":975451,"avatar_url":"https://avatars.githubusercontent.com/u/975451?v=3","gravatar_id":"","url":"https://api.github.com/users/schuhschuh","html_url":"https://github.com/schuhschuh","followers_url":"https://api.github.com/users/schuhschuh/followers","following_url":"https://api.github.com/users/schuhschuh/following{/other_user}","gists_url":"https://api.github.com/users/schuhschuh/gists{/gist_id}","starred_url":"https://api.github.com/users/schuhschuh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/schuhschuh/subscriptions","organizations_url":"https://api.github.com/users/schuhschuh/orgs","repos_url":"https://api.github.com/users/schuhschuh/repos","events_url":"https://api.github.com/users/schuhschuh/events{/privacy}","received_events_url":"https://api.github.com/users/schuhschuh/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-05-07T10:18:01Z","updated_at":"2015-05-07T11:26:40Z","closed_at":null,"body":"When I set the ```sharedDirectory``` of the SLURMEnvironment to a custom path located on storage shared by submission, head, and compute nodes, no jobs show up in the queue and are executed even though OpenMOLE reports that the submission was successful. When ```sharedDirectory = None``` it works fine."},"comment":{"url":"https://api.github.com/repos/openmole/openmole/issues/comments/99821222","html_url":"https://github.com/openmole/openmole/issues/48#issuecomment-99821222","issue_url":"https://api.github.com/repos/openmole/openmole/issues/48","id":99821222,"user":{"login":"schuhschuh","id":975451,"avatar_url":"https://avatars.githubusercontent.com/u/975451?v=3","gravatar_id":"","url":"https://api.github.com/users/schuhschuh","html_url":"https://github.com/schuhschuh","followers_url":"https://api.github.com/users/schuhschuh/followers","following_url":"https://api.github.com/users/schuhschuh/following{/other_user}","gists_url":"https://api.github.com/users/schuhschuh/gists{/gist_id}","starred_url":"https://api.github.com/users/schuhschuh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/schuhschuh/subscriptions","organizations_url":"https://api.github.com/users/schuhschuh/orgs","repos_url":"https://api.github.com/users/schuhschuh/repos","events_url":"https://api.github.com/users/schuhschuh/events{/privacy}","received_events_url":"https://api.github.com/users/schuhschuh/received_events","type":"User","site_admin":false},"created_at":"2015-05-07T11:26:40Z","updated_at":"2015-05-07T11:26:40Z","body":"I remember that when I encountered this first yesterday, I saw a Java related error. That some java command argument (-X...) was not recognised.\r\n\r\nYou can try yourself by running the Bash script ```/homes/as12312/Data/Registrations/openmole-sharedDirectory-issue.sh``` in a directory you have write permission for. It will create a subdirectory named ```OpenMOLESharedDirectoryTest``` and change to it before adding symbolic links to the required binaries and input data files. It then runs OpenMOLE (must be on the PATH) with my plugin loaded. You can start the workflow using\r\n```scala\r\nimport com.andreasschuh.repeat.workflow._\r\nval ex = PreRegistration().start\r\n```\r\n\r\nWithin this subdirectory, the sharedDirectory of the environment is ```Workspace/.openmole``` and the workDirectory is unchanged (```None```).\r\n\r\nThe relevant source files of my plugin if needed are in /homes/as12312/Code/REPEAT/src/main/scala/com/andreasschuh/repeat/\r\n- core/Environment.scala\r\n- puzzle/RegisterToTemplateRigid.scala\r\n- workflow/PreRegistrations.scala"}}