{"action":"created","issue":{"url":"https://api.github.com/repos/lgatto/MSnbase/issues/49","labels_url":"https://api.github.com/repos/lgatto/MSnbase/issues/49/labels{/name}","comments_url":"https://api.github.com/repos/lgatto/MSnbase/issues/49/comments","events_url":"https://api.github.com/repos/lgatto/MSnbase/issues/49/events","html_url":"https://github.com/lgatto/MSnbase/issues/49","id":59151467,"number":49,"title":"Can't install MSnbase from github","user":{"login":"adder","id":706666,"avatar_url":"https://avatars.githubusercontent.com/u/706666?v=3","gravatar_id":"","url":"https://api.github.com/users/adder","html_url":"https://github.com/adder","followers_url":"https://api.github.com/users/adder/followers","following_url":"https://api.github.com/users/adder/following{/other_user}","gists_url":"https://api.github.com/users/adder/gists{/gist_id}","starred_url":"https://api.github.com/users/adder/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adder/subscriptions","organizations_url":"https://api.github.com/users/adder/orgs","repos_url":"https://api.github.com/users/adder/repos","events_url":"https://api.github.com/users/adder/events{/privacy}","received_events_url":"https://api.github.com/users/adder/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-02-26T22:03:17Z","updated_at":"2015-02-26T22:50:51Z","closed_at":"2015-02-26T22:50:51Z","body":"Hi \r\nI would like to install msnbase from github to use the new calculatefragment features.\r\n\r\nI did\r\n````\r\ndevtools::install_github(\"lgatto/MSnbase\")\r\nlibrary(MSnbase)\r\n````\r\n\r\nI got:\r\n````\r\n> library(MSnbase)  \r\nError in get(hookname, envir = env, inherits = FALSE) : \r\n  lazy-load database '/home/adriaan/R/x86_64-unknown-linux-gnu-library/3.1/mzR/R/mzR.rdb' is corrupt\r\nIn addition: Warning message:\r\nIn get(hookname, envir = env, inherits = FALSE) :\r\n  internal error -3 in R_decompress1\r\nError: package or namespace load failed for ‘MSnbase’\r\n````\r\n\r\nMy sessioninfo is:\r\n````\r\n> sessionInfo()\r\nR version 3.1.2 (2014-10-31)\r\nPlatform: x86_64-unknown-linux-gnu (64-bit)\r\n\r\nlocale:\r\n [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              \r\n [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    \r\n [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   \r\n [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 \r\n [9] LC_ADDRESS=C               LC_TELEPHONE=C            \r\n[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       \r\n\r\nattached base packages:\r\n[1] parallel  stats     graphics  grDevices utils     datasets  methods  \r\n[8] base     \r\n\r\nother attached packages:\r\n[1] BiocParallel_1.0.3   mzR_2.1.10           Rcpp_0.11.4         \r\n[4] Biobase_2.26.0       BiocGenerics_0.12.1  BiocInstaller_1.16.1\r\n[7] dplyr_0.4.1         \r\n\r\nloaded via a namespace (and not attached):\r\n [1] affy_1.44.0           affyio_1.34.0         assertthat_0.1       \r\n [4] base64enc_0.1-2       BatchJobs_1.5         BBmisc_1.9           \r\n [7] bitops_1.0-6          brew_1.0-6            checkmate_1.5.1      \r\n[10] codetools_0.2-9       colorspace_1.2-4      compiler_3.1.2       \r\n[13] DBI_0.3.1             devtools_1.7.0        digest_0.6.8         \r\n[16] doParallel_1.0.8      evaluate_0.5.5        fail_1.2             \r\n[19] foreach_1.4.2         formatR_1.0           ggplot2_1.0.0        \r\n[22] grid_3.1.2            gtable_0.1.2          httr_0.6.1           \r\n[25] impute_1.40.0         IRanges_2.0.1         iterators_1.0.7      \r\n[28] knitr_1.9             lattice_0.20-29       lazyeval_0.1.10      \r\n[31] limma_3.22.5          magrittr_1.5          MALDIquant_1.11      \r\n[34] MASS_7.3-35           munsell_0.4.2         mzID_1.4.1           \r\n[37] pcaMethods_1.56.0     plyr_1.8.1            preprocessCore_1.28.0\r\n[40] proto_0.3-10          RCurl_1.95-4.5        reshape2_1.4.1       \r\n[43] RSQLite_1.0.0         S4Vectors_0.4.0       scales_0.2.4         \r\n[46] sendmailR_1.2-1       stats4_3.1.2          stringr_0.6.2        \r\n[49] tools_3.1.2           vsn_3.34.0            XML_3.98-1.1         \r\n[52] zlibbioc_1.12.0     \r\n````\r\n\r\nHave a  nice evening"},"comment":{"url":"https://api.github.com/repos/lgatto/MSnbase/issues/comments/76292518","html_url":"https://github.com/lgatto/MSnbase/issues/49#issuecomment-76292518","issue_url":"https://api.github.com/repos/lgatto/MSnbase/issues/49","id":76292518,"user":{"login":"lgatto","id":384198,"avatar_url":"https://avatars.githubusercontent.com/u/384198?v=3","gravatar_id":"","url":"https://api.github.com/users/lgatto","html_url":"https://github.com/lgatto","followers_url":"https://api.github.com/users/lgatto/followers","following_url":"https://api.github.com/users/lgatto/following{/other_user}","gists_url":"https://api.github.com/users/lgatto/gists{/gist_id}","starred_url":"https://api.github.com/users/lgatto/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lgatto/subscriptions","organizations_url":"https://api.github.com/users/lgatto/orgs","repos_url":"https://api.github.com/users/lgatto/repos","events_url":"https://api.github.com/users/lgatto/events{/privacy}","received_events_url":"https://api.github.com/users/lgatto/received_events","type":"User","site_admin":false},"created_at":"2015-02-26T22:50:51Z","updated_at":"2015-02-26T22:50:51Z","body":"No worries. I suspect that you had  already `MSnbase` and/or `mzR` loaded in your session and unloading/reloading was not enough."}}