{"action":"created","issue":{"url":"https://api.github.com/repos/cschwan/sage-on-gentoo/issues/378","labels_url":"https://api.github.com/repos/cschwan/sage-on-gentoo/issues/378/labels{/name}","comments_url":"https://api.github.com/repos/cschwan/sage-on-gentoo/issues/378/comments","events_url":"https://api.github.com/repos/cschwan/sage-on-gentoo/issues/378/events","html_url":"https://github.com/cschwan/sage-on-gentoo/issues/378","id":114760414,"number":378,"title":"sci-libs/linbox-1.3.2-r2 - checking for FFLAS-FFPACK >= 10600 and < 10700... not found","user":{"login":"devurandom","id":63082,"avatar_url":"https://avatars.githubusercontent.com/u/63082?v=3","gravatar_id":"","url":"https://api.github.com/users/devurandom","html_url":"https://github.com/devurandom","followers_url":"https://api.github.com/users/devurandom/followers","following_url":"https://api.github.com/users/devurandom/following{/other_user}","gists_url":"https://api.github.com/users/devurandom/gists{/gist_id}","starred_url":"https://api.github.com/users/devurandom/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/devurandom/subscriptions","organizations_url":"https://api.github.com/users/devurandom/orgs","repos_url":"https://api.github.com/users/devurandom/repos","events_url":"https://api.github.com/users/devurandom/events{/privacy}","received_events_url":"https://api.github.com/users/devurandom/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-11-03T07:21:04Z","updated_at":"2015-11-04T22:46:18Z","closed_at":null,"body":"sci-libs/linbox-1.3.2-r2 from sage-on-gentoo fails to build after enabling the science overlay (which sage-on-gentoo's layout.conf says is required):\r\n```\r\nchecking for GMP >= 3.1.1... found\r\nchecking whether GMP is 4.0 or greater... yes\r\nchecking whether GMP was compiled with --enable-cxx... yes\r\nchecking for IML... found\r\nchecking for M4RI... found\r\nchecking for M4RIE... found\r\nchecking for MPFR... found\r\nchecking for FPLLL... not found\r\nchecking for NTL >= 5.0... found\r\nchecking for GIVARO >= 30700 and < 30800... found\r\nchecking whether to compile the SAGE interface... yes\r\nchecking for FFLAS-FFPACK >= 10600 and < 10700... not found\r\n\r\n*******************************************************************************\r\n ERROR: Fflas-Ffpack not found!\r\n\r\n Fflas-Ffpack routines  are required for this library to compile. Please\r\n make sure they are installed and specify its location with the option\r\n --with-fflas-ffpack=<lib> when running configure.\r\n*******************************************************************************\r\n\r\n!!! Please attach the following file when seeking support:\r\n!!! /var/tmp/portage/sci-libs/linbox-1.3.2-r2/work/linbox-1.3.2/config.log\r\nERROR: sci-libs/linbox-1.3.2-r2::sage-on-gentoo failed (configure phase):\r\n econf failed\r\n```\r\n\r\n\r\n```\r\n# emerge --info sci-libs/linbox blas-reference cblas-reference lapack-reference gsl virtual/blas virtual/cblas eselect eselect-blas eselect-cblas\r\nPortage 2.2.23 (python 3.4.3-final-0, default/linux/amd64/13.0/desktop/plasma/systemd, gcc-4.9.3, glibc-2.22-r1, 4.2.5-gentoo x86_64)\r\n=================================================================\r\n                         System Settings\r\n=================================================================\r\nSystem uname: Linux-4.2.5-gentoo-x86_64-AMD_A10-7800_Radeon_R7,_12_Compute_Cores_4C+8G-with-gentoo-2.2\r\nKiB Mem:    15381424 total,   9139600 free\r\nKiB Swap:          0 total,         0 free\r\nTimestamp of repository gentoo: Tue, 03 Nov 2015 06:15:01 +0000\r\nsh bash 4.3_p42\r\nld GNU ld (Gentoo 2.25 p1.2) 2.25\r\nccache version 3.2.4 [disabled]\r\napp-shells/bash:          4.3_p42::gentoo\r\ndev-java/java-config:     2.2.0::gentoo\r\ndev-lang/perl:            5.22.0::gentoo\r\ndev-lang/python:          2.7.10::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo\r\ndev-util/ccache:          3.2.4::gentoo\r\ndev-util/cmake:           3.3.2-r1::gentoo\r\ndev-util/pkgconfig:       0.29::gentoo\r\nsys-apps/baselayout:      2.2::gentoo\r\nsys-apps/sandbox:         2.9::gentoo\r\nsys-devel/autoconf:       2.13::gentoo, 2.69-r1::gentoo\r\nsys-devel/automake:       1.11.6-r1::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.14.1::gentoo, 1.15::gentoo\r\nsys-devel/binutils:       2.25-r1::gentoo\r\nsys-devel/gcc:            4.9.3::gentoo\r\nsys-devel/gcc-config:     1.8-r1::gentoo\r\nsys-devel/libtool:        2.4.6-r1::gentoo\r\nsys-devel/make:           4.1-r1::gentoo\r\nsys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)\r\nsys-libs/glibc:           2.22-r1::gentoo\r\nRepositories:\r\n\r\ngentoo\r\n    location: /var/cache/portage/gentoo\r\n    sync-type: rsync\r\n    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage\r\n    priority: -1000\r\n\r\naegypius\r\n    location: /var/lib/layman/aegypius\r\n    sync-type: laymansync\r\n    sync-uri: git://github.com/aegypius/overlay.git\r\n    masters: gentoo\r\n    priority: 50\r\n\r\nkde\r\n    location: /var/lib/layman/kde\r\n    sync-type: laymansync\r\n    sync-uri: git://anongit.gentoo.org/proj/kde.git\r\n    masters: gentoo\r\n    priority: 50\r\n\r\nsage-on-gentoo\r\n    location: /var/lib/layman/sage-on-gentoo\r\n    sync-type: laymansync\r\n    sync-uri: git://github.com/cschwan/sage-on-gentoo.git\r\n    masters: gentoo science\r\n    priority: 50\r\n\r\nscience\r\n    location: /var/lib/layman/science\r\n    sync-type: laymansync\r\n    sync-uri: git://anongit.gentoo.org/proj/sci.git\r\n    masters: gentoo\r\n    priority: 50\r\n\r\nlocal\r\n    location: /var/cache/portage/local\r\n    masters: gentoo\r\n    priority: 100\r\n\r\nACCEPT_KEYWORDS=\"amd64 ~amd64\"\r\nACCEPT_LICENSE=\"* -@EULA\"\r\nCBUILD=\"x86_64-pc-linux-gnu\"\r\nCFLAGS=\"-pipe -O2 -march=bdver3\"\r\nCHOST=\"x86_64-pc-linux-gnu\"\r\nCONFIG_PROTECT=\"/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /usr/share/themes/oxygen-gtk/gtk-3.0\"\r\nCONFIG_PROTECT_MASK=\"/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c\"\r\nCXXFLAGS=\"-pipe -O2 -march=bdver3\"\r\nDISTDIR=\"/var/cache/portage/distfiles\"\r\nEMERGE_DEFAULT_OPTS=\"--keep-going --nospinner\"\r\nFCFLAGS=\"-O2 -pipe\"\r\nFEATURES=\"assume-digests binpkg-logs buildsyspkg compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr\"\r\nFFLAGS=\"-O2 -pipe\"\r\nGENTOO_MIRRORS=\"http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/ http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://distfiles.gentoo.org\"\r\nLANG=\"en_GB.UTF-8\"\r\nLDFLAGS=\"-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu\"\r\nMAKEOPTS=\"-j5\"\r\nPKGDIR=\"/var/cache/portage/packages\"\r\nPORTAGE_COMPRESS=\"xz\"\r\nPORTAGE_CONFIGROOT=\"/\"\r\nPORTAGE_RSYNC_OPTS=\"--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages\"\r\nPORTAGE_TMPDIR=\"/var/tmp\"\r\nUSE=\"X a52 aac aacplus aacs acl acpi alsa amd64 appindicator audit avahi bash-completion bdplus berkdb bluetooth bluray branding bzip2 cairo caps cdda cddb cdio cdr celt cjk cli conntrack cracklib crypt cups cxx dbus declarative dirac dri dts dvb dvd dvdr egl emboss encode exif fam fax ffmpeg firefox flac fontconfig fortran gdbm gif glamor gles gles2 gmp gpm gstreamer gtk ibus iconv ipv6 jpeg jpeg2k kde kipi ladspa latex lcms ldap libinput libnotify libproxy libsecret lua_target_lua5-2 lv2 lz4 lzma lzo mad mmx mmxext mng modemmanager modplug modules mp3 mp4 mpeg mplayer mtp multilib multitarget mysql ncurses netlink networkmanager nls nptl ogg openal opencl openexr opengl openmax openmp opus pam pango pch pcre pdf phonon plasma png policykit ppds pulseaudio qml qt3support qt4 qt5 readline rtmp samba scanner schroedinger sctp sdl seccomp semantic-desktop session speex spell sse sse2 ssl startup-notification subversion svg systemd tcpd theora threads tiff truetype udev udisks unicode upnp upnp-av upower usb v4l vaapi vdpau vorbis vpx wavpack wayland webp widgets x264 x265 xattr xcb xcomposite xinerama xml xrandr xscreensaver xv xvid xz zeroconf zlib\" ABI_X86=\"64\" ALSA_CARDS=\"hda-intel\" APACHE2_MODULES=\"authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias\" CALLIGRA_FEATURES=\"stage words flow sheets gemini\" CAMERAS=\"ptp2\" COLLECTD_PLUGINS=\"df interface irq load memory rrdtool swap syslog\" CPU_FLAGS_X86=\"3dnow 3dnowext mmx mmxext sse sse2 sse3\" DRACUT_MODULES=\"btrfs caps systemd\" ELIBC=\"glibc\" ENLIGHTENMENT_MODULES=\"*\" GPSD_PROTOCOLS=\"ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx\" GRUB_PLATFORMS=\"coreboot efi-64 pc\" INPUT_DEVICES=\"evdev joystick\" KERNEL=\"linux\" LCD_DEVICES=\"bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text\" LIBREOFFICE_EXTENSIONS=\"presenter-console presenter-minimizer\" LINGUAS=\"de en en_GB ar fa\" LIRC_DEVICES=\"devinput\" OFFICE_IMPLEMENTATION=\"libreoffice\" PHP_TARGETS=\"php5-5\" PYTHON_SINGLE_TARGET=\"python2_7\" PYTHON_TARGETS=\"python2_7 python3_4\" RUBY_TARGETS=\"ruby20 ruby21\" USERLAND=\"GNU\" VIDEO_CARDS=\"amdgpu radeon radeonsi\" XTABLES_ADDONS=\"quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account\"\r\nUnset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON\r\n\r\n=================================================================\r\n                        Package Settings\r\n=================================================================\r\n\r\nsci-libs/linbox-1.3.2-r2::sage-on-gentoo was built with the following:\r\nUSE=\"sage -static-libs\" ABI_X86=\"64\"\r\n\r\n\r\nsci-libs/blas-reference-20131116-r1::science was built with the following:\r\nUSE=\"-int64 -static-libs -test\" ABI_X86=\"64 -32 -x32\"\r\n\r\n\r\nsci-libs/cblas-reference-20110218-r1::science was built with the following:\r\nUSE=\"-int64 -static-libs\" ABI_X86=\"64 -32 -x32\"\r\nCFLAGS=\"-pipe -O2 -march=bdver3 -DADD_\"\r\n\r\n\r\nsci-libs/lapack-reference-3.5.0::science was built with the following:\r\nUSE=\"-int64 -static-libs -test -xblas\" ABI_X86=\"64 -32 -x32\"\r\n\r\n\r\nsci-libs/gsl-1.16-r2::science was built with the following:\r\nUSE=\"-cblas-external -static-libs\" ABI_X86=\"64 -32 -x32\"\r\n\r\n\r\nvirtual/blas-2.1-r3::science was built with the following:\r\nUSE=\"-doc -int64\" ABI_X86=\"64\"\r\nCHOST=\"\"\r\n\r\n\r\nvirtual/cblas-2.0-r3::science was built with the following:\r\nUSE=\"-int64\" ABI_X86=\"64 -32 -x32\"\r\nCHOST=\"\"\r\n\r\n\r\napp-admin/eselect-1.4.5-r101::science was built with the following:\r\nUSE=\"-doc -emacs -vim-syntax\" ABI_X86=\"64\"\r\n```\r\n\r\n[build.log](https://cloud.githubusercontent.com/assets/63082/10902838/2036d62a-8203-11e5-9f7a-c174d110533f.png) (It's not actually image/png but text/plain - the filename extension was only chosen to fool GitHub.)"},"comment":{"url":"https://api.github.com/repos/cschwan/sage-on-gentoo/issues/comments/153893911","html_url":"https://github.com/cschwan/sage-on-gentoo/issues/378#issuecomment-153893911","issue_url":"https://api.github.com/repos/cschwan/sage-on-gentoo/issues/378","id":153893911,"user":{"login":"devurandom","id":63082,"avatar_url":"https://avatars.githubusercontent.com/u/63082?v=3","gravatar_id":"","url":"https://api.github.com/users/devurandom","html_url":"https://github.com/devurandom","followers_url":"https://api.github.com/users/devurandom/followers","following_url":"https://api.github.com/users/devurandom/following{/other_user}","gists_url":"https://api.github.com/users/devurandom/gists{/gist_id}","starred_url":"https://api.github.com/users/devurandom/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/devurandom/subscriptions","organizations_url":"https://api.github.com/users/devurandom/orgs","repos_url":"https://api.github.com/users/devurandom/repos","events_url":"https://api.github.com/users/devurandom/events{/privacy}","received_events_url":"https://api.github.com/users/devurandom/received_events","type":"User","site_admin":false},"created_at":"2015-11-04T22:46:18Z","updated_at":"2015-11-04T22:46:18Z","body":"```\r\n$ eix blas-ref\r\n[I] sci-libs/blas-reference\r\n     Available versions:  [m]20070226 [m](~)20070226-r2 [m]**20070226-r3 (~)20131116[1] (~)20131116-r1[1] **99999999[1] {doc int64 static-libs test ABI_MIPS=\"n32 n64 o32\" ABI_PPC=\"32 64\" ABI_S390=\"32 64\" ABI_X86=\"32 64 x32\"}\r\n     Installed versions:  20131116-r1[1](14:32:23 31/10/15)(-int64 -static-libs -test ABI_MIPS=\"-n32 -n64 -o32\" ABI_PPC=\"-32 -64\" ABI_S390=\"-32 -64\" ABI_X86=\"64 -32 -x32\")\r\n     Homepage:            http://www.netlib.org/lapack/\r\n     Description:         Reference implementation of BLAS\r\n\r\n[I] sci-libs/cblas-reference\r\n     Available versions:  [m]20030223-r4 [m](~)20030223-r5 (~)20110218[1] (~)20110218-r1[1] {int64 static-libs}\r\n     Installed versions:  20110218-r1[1](14:32:45 31/10/15)(-int64 -static-libs ABI_MIPS=\"-n32 -n64 -o32\" ABI_PPC=\"-32 -64\" ABI_S390=\"-32 -64\" ABI_X86=\"64 -32 -x32\")\r\n     Homepage:            http://www.netlib.org/blas/\r\n     Description:         C wrapper interface to the F77 reference BLAS implementation\r\n\r\n[1] \"science\" /var/lib/layman/science\r\n\r\nFound 2 matches.\r\n```"}}