{"action":"created","issue":{"url":"https://api.github.com/repos/WormBase/website/issues/4062","labels_url":"https://api.github.com/repos/WormBase/website/issues/4062/labels{/name}","comments_url":"https://api.github.com/repos/WormBase/website/issues/4062/comments","events_url":"https://api.github.com/repos/WormBase/website/issues/4062/events","html_url":"https://github.com/WormBase/website/issues/4062","id":96386190,"number":4062,"title":"Problematic protein motif lines in several GFF files","user":{"login":"scottcain","id":274751,"avatar_url":"https://avatars.githubusercontent.com/u/274751?v=3","gravatar_id":"","url":"https://api.github.com/users/scottcain","html_url":"https://github.com/scottcain","followers_url":"https://api.github.com/users/scottcain/followers","following_url":"https://api.github.com/users/scottcain/following{/other_user}","gists_url":"https://api.github.com/users/scottcain/gists{/gist_id}","starred_url":"https://api.github.com/users/scottcain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scottcain/subscriptions","organizations_url":"https://api.github.com/users/scottcain/orgs","repos_url":"https://api.github.com/users/scottcain/repos","events_url":"https://api.github.com/users/scottcain/events{/privacy}","received_events_url":"https://api.github.com/users/scottcain/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"khowe","id":708483,"avatar_url":"https://avatars.githubusercontent.com/u/708483?v=3","gravatar_id":"","url":"https://api.github.com/users/khowe","html_url":"https://github.com/khowe","followers_url":"https://api.github.com/users/khowe/followers","following_url":"https://api.github.com/users/khowe/following{/other_user}","gists_url":"https://api.github.com/users/khowe/gists{/gist_id}","starred_url":"https://api.github.com/users/khowe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/khowe/subscriptions","organizations_url":"https://api.github.com/users/khowe/orgs","repos_url":"https://api.github.com/users/khowe/repos","events_url":"https://api.github.com/users/khowe/events{/privacy}","received_events_url":"https://api.github.com/users/khowe/received_events","type":"User","site_admin":false},"milestone":null,"comments":3,"created_at":"2015-07-21T18:34:19Z","updated_at":"2015-07-22T03:02:51Z","closed_at":"2015-07-22T03:02:51Z","body":"While the polypeptide_motif:translated_feature lines in the C. elegans GFF3 file for WS249 seems fine, similar features in the c_briggsae and p_pacificus files have problems.  See this example from C. briggsae:\r\n\r\n```\r\nI       translated_feature      polypeptide_motif       17993   18060   .       +       .       ID=motif:CBG11839-hmmpanther.1\r\nI       translated_feature      polypeptide_motif       17993   18060   .       +       .       ID=motif:CBG11839-hmmpanther.1;cds=CBG11839;type=hmmpanther;range=3-109;exons=1-2;protein=BP:CBP17299;description=HMMPANTHER:PTHR15087\r\n```\r\n\r\nThis seems to happen to the hmmpanther lines and is causing JBrowse to trip up.  I'm guessing this is a case of there really being multiple discontiguous regions of the feature but the coordinates are getting overwritten somewhere so that each line of the feature has the same coordinate.\r\n"},"comment":{"url":"https://api.github.com/repos/WormBase/website/issues/comments/123548506","html_url":"https://github.com/WormBase/website/issues/4062#issuecomment-123548506","issue_url":"https://api.github.com/repos/WormBase/website/issues/4062","id":123548506,"user":{"login":"scottcain","id":274751,"avatar_url":"https://avatars.githubusercontent.com/u/274751?v=3","gravatar_id":"","url":"https://api.github.com/users/scottcain","html_url":"https://github.com/scottcain","followers_url":"https://api.github.com/users/scottcain/followers","following_url":"https://api.github.com/users/scottcain/following{/other_user}","gists_url":"https://api.github.com/users/scottcain/gists{/gist_id}","starred_url":"https://api.github.com/users/scottcain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scottcain/subscriptions","organizations_url":"https://api.github.com/users/scottcain/orgs","repos_url":"https://api.github.com/users/scottcain/repos","events_url":"https://api.github.com/users/scottcain/events{/privacy}","received_events_url":"https://api.github.com/users/scottcain/received_events","type":"User","site_admin":false},"created_at":"2015-07-22T03:02:51Z","updated_at":"2015-07-22T03:02:51Z","body":"@khowe No problem: since some had been fixed, I just wanted to make sure it was pointed out that it wasn't 100%.  I can just delete those tracks and they will just get added back in when 250 gets processed.\r\n"}}