{"action":"closed","issue":{"url":"https://api.github.com/repos/boutproject/BOUT-dev/issues/39","labels_url":"https://api.github.com/repos/boutproject/BOUT-dev/issues/39/labels{/name}","comments_url":"https://api.github.com/repos/boutproject/BOUT-dev/issues/39/comments","events_url":"https://api.github.com/repos/boutproject/BOUT-dev/issues/39/events","html_url":"https://github.com/boutproject/BOUT-dev/issues/39","id":61607330,"number":39,"title":"BoutInitialise failure","user":{"login":"johnomotani","id":3958036,"avatar_url":"https://avatars.githubusercontent.com/u/3958036?v=3","gravatar_id":"","url":"https://api.github.com/users/johnomotani","html_url":"https://github.com/johnomotani","followers_url":"https://api.github.com/users/johnomotani/followers","following_url":"https://api.github.com/users/johnomotani/following{/other_user}","gists_url":"https://api.github.com/users/johnomotani/gists{/gist_id}","starred_url":"https://api.github.com/users/johnomotani/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/johnomotani/subscriptions","organizations_url":"https://api.github.com/users/johnomotani/orgs","repos_url":"https://api.github.com/users/johnomotani/repos","events_url":"https://api.github.com/users/johnomotani/events{/privacy}","received_events_url":"https://api.github.com/users/johnomotani/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-03-14T13:35:06Z","updated_at":"2015-03-14T16:15:05Z","closed_at":"2015-03-14T16:15:05Z","body":"Since update b3bf0d8fc38984175389526dde3dacf589083589 (\" Make BoutInitialise return an int and cause BOUT++ to exit if non-zero//Fixes segfault for some command line options\"), BOUT++ fails to run for me. It crashes silently, apparently during BoutInitialise; e.g. running test_io the console output ends with\r\n```\r\nWARNING: Magnitude of B field 'Bxy' not found. Calculating from metric tensor\r\nCalculating differential geometry terms\r\n\tCommunicating connection terms\r\nBoundary regions in this processor: core, sol, \r\n\tdone\r\njto22@john-laptop ~/Code/BOUT-dev/examples/test-io $ \r\n```\r\nAttempting to debug with gdb: setting a breakpoint at BoutInitialise the execution does not stop at all. Breaking at main and trying to step into BoutInitialise results in a SegFault.\r\n\r\nFailure occurs with a clean install of BOUT++, no extra options to configure (and also occurs when setting --with-debug only). Tested on my (Linux Mint) laptop. Also fails in apparently identical fashion on CCFE linux server.\r\n\r\nDoes a clean install work/fail for anyone else?"}}