{"action":"created","issue":{"url":"https://api.github.com/repos/UV-CDAT/uvcdat/issues/1694","labels_url":"https://api.github.com/repos/UV-CDAT/uvcdat/issues/1694/labels{/name}","comments_url":"https://api.github.com/repos/UV-CDAT/uvcdat/issues/1694/comments","events_url":"https://api.github.com/repos/UV-CDAT/uvcdat/issues/1694/events","html_url":"https://github.com/UV-CDAT/uvcdat/issues/1694","id":117178658,"number":1694,"title":"Numpy issue during uvcdat build","user":{"login":"mcenerney1","id":5384079,"avatar_url":"https://avatars.githubusercontent.com/u/5384079?v=3","gravatar_id":"","url":"https://api.github.com/users/mcenerney1","html_url":"https://github.com/mcenerney1","followers_url":"https://api.github.com/users/mcenerney1/followers","following_url":"https://api.github.com/users/mcenerney1/following{/other_user}","gists_url":"https://api.github.com/users/mcenerney1/gists{/gist_id}","starred_url":"https://api.github.com/users/mcenerney1/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mcenerney1/subscriptions","organizations_url":"https://api.github.com/users/mcenerney1/orgs","repos_url":"https://api.github.com/users/mcenerney1/repos","events_url":"https://api.github.com/users/mcenerney1/events{/privacy}","received_events_url":"https://api.github.com/users/mcenerney1/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":12,"created_at":"2015-11-16T17:38:23Z","updated_at":"2015-11-17T18:33:45Z","closed_at":"2015-11-17T18:33:26Z","body":"Following the documentation\r\ncmake ../uvcdat -DCDAT_BUILD_PARALLEL=ON \r\nmake -j4 \r\n\r\ngets the following \r\n\r\n[ 53%] Performing build step for 'NUMPY'\r\n-- setuptools install command succeeded.  See also /Users/mcenerney1/build_11_16_15/setuptools-prefix/src/setuptools-stamp/setuptools-install-*.log\r\n\r\n[ 53%] Completed 'setuptools'\r\n[ 53%] Built target setuptools\r\nCMake Error at /Users/mcenerney1/build_11_16_15/NUMPY-prefix/src/NUMPY-stamp/NUMPY-build.cmake:56 (message):\r\n  CTEST_FULL_OUTPUT\r\n\r\n   Command failed: 1\r\n   '/usr/local/bin/cmake' '-P' '/Users/mcenerney1/build_11_16_15/CMake/NUMPY_make_step.cmake'\r\n   From /Users/mcenerney1/build_11_16_15/NUMPY-prefix/src/NUMPY-stamp/NUMPY-build-out.log\r\n\r\n  -------------------------------------------------\r\n\r\n  -------------------------------------------------\r\n\r\n   From /Users/mcenerney1/build_11_16_15/NUMPY-prefix/src/NUMPY-stamp/NUMPY-build-err.log\r\n\r\n  -------------------------------------------------\r\n\r\n  Running from numpy source directory.\r\n\r\n  \r\n  /usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267:\r\n  UserWarning: Unknown distribution option: 'test_suite'\r\n\r\n    warnings.warn(msg)\r\n\r\n  \r\n  /usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267:\r\n  UserWarning: Unknown distribution option: 'define_macros'\r\n\r\n    warnings.warn(msg)\r\n\r\n  Traceback (most recent call last):\r\n\r\n    File \"setup.py\", line 251, in <module>\r\n      setup_package()\r\n    File \"setup.py\", line 243, in setup_package\r\n      setup(**metadata)\r\n    File \"/Users/mcenerney1/build_11_16_15/build/NUMPY/numpy/distutils/core.py\", line 169, in setup\r\n      return old_setup(**new_attr)\r\n    File \"/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py\", line 151, in setup\r\n      dist.run_commands()\r\n    File \"/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py\", line 953, in run_commands\r\n      self.run_command(cmd)\r\n    File \"/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py\", line 972, in run_command\r\n      cmd_obj.run()\r\n    File \"/Users/mcenerney1/build_11_16_15/build/NUMPY/numpy/distutils/command/build.py\", line 39, in run\r\n      old_build.run(self)\r\n    File \"/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/command/build.py\", line 127, in run\r\n      self.run_command(cmd_name)\r\n    File \"/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/cmd.py\", line 326, in run_command\r\n      self.distribution.run_command(command)\r\n    File \"/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py\", line 972, in run_command\r\n      cmd_obj.run()\r\n    File \"/Users/mcenerney1/build_11_16_15/build/NUMPY/numpy/distutils/command/build_src.py\", line 153, in run\r\n      self.build_sources()\r\n    File \"/Users/mcenerney1/build_11_16_15/build/NUMPY/numpy/distutils/command/build_src.py\", line 164, in build_sources\r\n      self.build_library_sources(*libname_info)\r\n    File \"/Users/mcenerney1/build_11_16_15/build/NUMPY/numpy/distutils/command/build_src.py\", line 299, in build_library_sources\r\n      sources = self.generate_sources(sources, (lib_name, build_info))\r\n    File \"/Users/mcenerney1/build_11_16_15/build/NUMPY/numpy/distutils/command/build_src.py\", line 386, in generate_sources\r\n      source = func(extension, build_dir)\r\n    File \"numpy/core/setup.py\", line 686, in get_mathlib_info\r\n      raise RuntimeError(\"Broken toolchain: cannot link a simple C program\")\r\n\r\n  RuntimeError: Broken toolchain: cannot link a simple C program\r\n\r\n  [ERROR] NUMPY Errors detected:\r\n\r\n  \r\n\r\n  non-existing path in 'numpy/f2py': 'docs'\r\n\r\n  non-existing path in 'numpy/f2py': 'f2py.1'\r\n\r\n  F2PY Version 2\r\n\r\n  blas_opt_info:\r\n\r\n  blas_mkl_info:\r\n\r\n    libraries mkl,vml,guide not found in ['/usr/local/uvcdat/11_16_2015/Library/Frameworks/Python.framework/Versions/2.7/lib', '/usr/local/lib', '/usr/lib']\r\n    NOT AVAILABLE\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/UV-CDAT/uvcdat/issues/comments/157462794","html_url":"https://github.com/UV-CDAT/uvcdat/issues/1694#issuecomment-157462794","issue_url":"https://api.github.com/repos/UV-CDAT/uvcdat/issues/1694","id":157462794,"user":{"login":"aashish24","id":146527,"avatar_url":"https://avatars.githubusercontent.com/u/146527?v=3","gravatar_id":"","url":"https://api.github.com/users/aashish24","html_url":"https://github.com/aashish24","followers_url":"https://api.github.com/users/aashish24/followers","following_url":"https://api.github.com/users/aashish24/following{/other_user}","gists_url":"https://api.github.com/users/aashish24/gists{/gist_id}","starred_url":"https://api.github.com/users/aashish24/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aashish24/subscriptions","organizations_url":"https://api.github.com/users/aashish24/orgs","repos_url":"https://api.github.com/users/aashish24/repos","events_url":"https://api.github.com/users/aashish24/events{/privacy}","received_events_url":"https://api.github.com/users/aashish24/received_events","type":"User","site_admin":false},"created_at":"2015-11-17T18:33:45Z","updated_at":"2015-11-17T18:33:45Z","body":"@williams13 @doutriaux1 feel free to open this if needed. "}}