{"action":"closed","issue":{"url":"https://api.github.com/repos/kroneckerbio/kroneckerbio/issues/57","labels_url":"https://api.github.com/repos/kroneckerbio/kroneckerbio/issues/57/labels{/name}","comments_url":"https://api.github.com/repos/kroneckerbio/kroneckerbio/issues/57/comments","events_url":"https://api.github.com/repos/kroneckerbio/kroneckerbio/issues/57/events","html_url":"https://github.com/kroneckerbio/kroneckerbio/issues/57","id":108997301,"number":57,"title":"Output compartments","user":{"login":"xpspectre","id":4530441,"avatar_url":"https://avatars.githubusercontent.com/u/4530441?v=3","gravatar_id":"","url":"https://api.github.com/users/xpspectre","html_url":"https://github.com/xpspectre","followers_url":"https://api.github.com/users/xpspectre/followers","following_url":"https://api.github.com/users/xpspectre/following{/other_user}","gists_url":"https://api.github.com/users/xpspectre/gists{/gist_id}","starred_url":"https://api.github.com/users/xpspectre/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/xpspectre/subscriptions","organizations_url":"https://api.github.com/users/xpspectre/orgs","repos_url":"https://api.github.com/users/xpspectre/repos","events_url":"https://api.github.com/users/xpspectre/events{/privacy}","received_events_url":"https://api.github.com/users/xpspectre/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"xpspectre","id":4530441,"avatar_url":"https://avatars.githubusercontent.com/u/4530441?v=3","gravatar_id":"","url":"https://api.github.com/users/xpspectre","html_url":"https://github.com/xpspectre","followers_url":"https://api.github.com/users/xpspectre/followers","following_url":"https://api.github.com/users/xpspectre/following{/other_user}","gists_url":"https://api.github.com/users/xpspectre/gists{/gist_id}","starred_url":"https://api.github.com/users/xpspectre/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/xpspectre/subscriptions","organizations_url":"https://api.github.com/users/xpspectre/orgs","repos_url":"https://api.github.com/users/xpspectre/repos","events_url":"https://api.github.com/users/xpspectre/events{/privacy}","received_events_url":"https://api.github.com/users/xpspectre/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/kroneckerbio/kroneckerbio/milestones/1","html_url":"https://github.com/kroneckerbio/kroneckerbio/milestones/0.5","labels_url":"https://api.github.com/repos/kroneckerbio/kroneckerbio/milestones/1/labels","id":1055204,"number":1,"title":"0.5","description":"","creator":{"login":"drhagen","id":2952478,"avatar_url":"https://avatars.githubusercontent.com/u/2952478?v=3","gravatar_id":"","url":"https://api.github.com/users/drhagen","html_url":"https://github.com/drhagen","followers_url":"https://api.github.com/users/drhagen/followers","following_url":"https://api.github.com/users/drhagen/following{/other_user}","gists_url":"https://api.github.com/users/drhagen/gists{/gist_id}","starred_url":"https://api.github.com/users/drhagen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/drhagen/subscriptions","organizations_url":"https://api.github.com/users/drhagen/orgs","repos_url":"https://api.github.com/users/drhagen/repos","events_url":"https://api.github.com/users/drhagen/events{/privacy}","received_events_url":"https://api.github.com/users/drhagen/received_events","type":"User","site_admin":false},"open_issues":8,"closed_issues":21,"state":"open","created_at":"2015-04-06T21:20:53Z","updated_at":"2015-10-09T22:20:43Z","due_on":null,"closed_at":null},"comments":29,"created_at":"2015-09-30T01:39:57Z","updated_at":"2015-10-09T22:20:43Z","closed_at":"2015-10-09T22:20:43Z","body":"Referred to in later comments in issue #54, that arose when implementing reaction compartments.\r\n\r\nPros to output compartments:\r\n* uniformity with reactions\r\n\r\nCons to output compartments:\r\n* outputs don't belong in compartments as naturally as reactions (excepting transport rxns)\r\n\r\nSome complexity is required - what makes the most sense?\r\n\r\nAlso, this applies to the regexes for states in mass action compartment sizes. In that case, using the state in that compartment may make sense."}}