{"push_id":667436611,"size":1,"distinct_size":1,"ref":"refs/heads/sbmlparser","head":"c06f9aa6cd887f35f972f7bb364cb94fb6c1b794","before":"d689d21598dfb2125ef052b1dd9692ec36895d98","commits":[{"sha":"c06f9aa6cd887f35f972f7bb364cb94fb6c1b794","author":{"email":"1a24a6a0cb4a832dcf8a34ddcc82d2d55474db98@gmail.com","name":"Jose Juan Tapia"},"message":"adding pathway commons (-p) option to atomizer\n\nThis update adds the ability for atomizer to consult pathway commons when there's\nambiguity regarding the binding of two complexes. The method received two biological names which converts two uniprot through bioservices, and uses\nthose to interface directly with the path2commons service\n\nhttp://www.pathwaycommons.org/pc2/graph\n\nThis ability is disabled by default and can be used by activating the '-p' flag\nduring the sbmlTranslator invocation. The service is extremely slow since queries are done one by one. Possible optimizations include\nfiguring out how to merge queries. Additionally the results obtained could use\nsome better discrimination since the pathway commons graph neighbor service\nseems to be overzelaous when testing for connection between two proteins.","distinct":true,"url":"https://api.github.com/repos/RuleWorld/bionetgen/commits/c06f9aa6cd887f35f972f7bb364cb94fb6c1b794"}]}