{"action":"created","issue":{"url":"https://api.github.com/repos/SteinCK/M-ComBat/issues/1","labels_url":"https://api.github.com/repos/SteinCK/M-ComBat/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/SteinCK/M-ComBat/issues/1/comments","events_url":"https://api.github.com/repos/SteinCK/M-ComBat/issues/1/events","html_url":"https://github.com/SteinCK/M-ComBat/issues/1","id":94945047,"number":1,"title":"object \"design.mat\" not found","user":{"login":"aespin","id":11944288,"avatar_url":"https://avatars.githubusercontent.com/u/11944288?v=3","gravatar_id":"","url":"https://api.github.com/users/aespin","html_url":"https://github.com/aespin","followers_url":"https://api.github.com/users/aespin/followers","following_url":"https://api.github.com/users/aespin/following{/other_user}","gists_url":"https://api.github.com/users/aespin/gists{/gist_id}","starred_url":"https://api.github.com/users/aespin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aespin/subscriptions","organizations_url":"https://api.github.com/users/aespin/orgs","repos_url":"https://api.github.com/users/aespin/repos","events_url":"https://api.github.com/users/aespin/events{/privacy}","received_events_url":"https://api.github.com/users/aespin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-07-14T13:28:12Z","updated_at":"2015-07-14T18:13:02Z","closed_at":null,"body":"I am using R version 3.2.1 in Ubuntu, with \"BiocInstaller_1.18.3\" and \"sva_3.14.0\".\r\nWhen I try to run the line:\r\n>RES2 <- M.COMBAT( C , batch , center=1 , mod )  # perform  M-ComBat centered at batch 1\r\nThe error message \"object \"design.mat\" not found\" appears (refering to the line from the loop \"M.COMBAT\" in the script: \"design <- sva:::design.mat(mod, numCov = numCovs)\").\r\nHowever, using a previous version from R/sva it does work...is it possible?\r\nThanks in advance, \r\nAlmudena "},"comment":{"url":"https://api.github.com/repos/SteinCK/M-ComBat/issues/comments/121327499","html_url":"https://github.com/SteinCK/M-ComBat/issues/1#issuecomment-121327499","issue_url":"https://api.github.com/repos/SteinCK/M-ComBat/issues/1","id":121327499,"user":{"login":"SteinCK","id":9829765,"avatar_url":"https://avatars.githubusercontent.com/u/9829765?v=3","gravatar_id":"","url":"https://api.github.com/users/SteinCK","html_url":"https://github.com/SteinCK","followers_url":"https://api.github.com/users/SteinCK/followers","following_url":"https://api.github.com/users/SteinCK/following{/other_user}","gists_url":"https://api.github.com/users/SteinCK/gists{/gist_id}","starred_url":"https://api.github.com/users/SteinCK/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/SteinCK/subscriptions","organizations_url":"https://api.github.com/users/SteinCK/orgs","repos_url":"https://api.github.com/users/SteinCK/repos","events_url":"https://api.github.com/users/SteinCK/events{/privacy}","received_events_url":"https://api.github.com/users/SteinCK/received_events","type":"User","site_admin":false},"created_at":"2015-07-14T18:13:02Z","updated_at":"2015-07-14T18:13:02Z","body":"You are right. Newer sva package removes some of the functions necessary to run implementation of MComBat.  \r\nI will add additional code that functions with R 3.2.1 and sva 3.14.0"}}