{"action":"opened","issue":{"url":"https://api.github.com/repos/BioDocker/BWA/issues/1","labels_url":"https://api.github.com/repos/BioDocker/BWA/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/BioDocker/BWA/issues/1/comments","events_url":"https://api.github.com/repos/BioDocker/BWA/issues/1/events","html_url":"https://github.com/BioDocker/BWA/issues/1","id":60065700,"number":1,"title":"Can not run bwa","user":{"login":"alartin","id":1917472,"avatar_url":"https://avatars.githubusercontent.com/u/1917472?v=3","gravatar_id":"","url":"https://api.github.com/users/alartin","html_url":"https://github.com/alartin","followers_url":"https://api.github.com/users/alartin/followers","following_url":"https://api.github.com/users/alartin/following{/other_user}","gists_url":"https://api.github.com/users/alartin/gists{/gist_id}","starred_url":"https://api.github.com/users/alartin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alartin/subscriptions","organizations_url":"https://api.github.com/users/alartin/orgs","repos_url":"https://api.github.com/users/alartin/repos","events_url":"https://api.github.com/users/alartin/events{/privacy}","received_events_url":"https://api.github.com/users/alartin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-03-06T06:38:36Z","updated_at":"2015-03-06T06:38:36Z","closed_at":null,"body":"I used cmds below (demo.fa exists in /home/docker):\r\ndocker run hexabio/bwa index demo.fa\r\ndocker run -v /home/docker:/data/ hexabio/bwa index /data/demo.fa\r\ndocker run -v /home/docker:/data/ hexabio/bwa index -input /data/demo.fa -outpu /data\r\n\r\nNone of them works. They all only output the bwa usage prompt like:\r\nProgram: bwa (alignment via Burrows-Wheeler transformation)\r\nVersion: 0.7.5a-r405\r\nContact: Heng Li <lh3@sanger.ac.uk>\r\n\r\nUsage:   bwa <command> [options]\r\n\r\nThe manual lacks the user guide. Only listing docker run xxxxx [params] is not enough."}}