{"action":"opened","issue":{"url":"https://api.github.com/repos/taborlab/FlowCal/issues/171","labels_url":"https://api.github.com/repos/taborlab/FlowCal/issues/171/labels{/name}","comments_url":"https://api.github.com/repos/taborlab/FlowCal/issues/171/comments","events_url":"https://api.github.com/repos/taborlab/FlowCal/issues/171/events","html_url":"https://github.com/taborlab/FlowCal/issues/171","id":123334913,"number":171,"title":"Errors with autoinstalling of python libraries","user":{"login":"BrianLandry","id":2424677,"avatar_url":"https://avatars.githubusercontent.com/u/2424677?v=3","gravatar_id":"","url":"https://api.github.com/users/BrianLandry","html_url":"https://github.com/BrianLandry","followers_url":"https://api.github.com/users/BrianLandry/followers","following_url":"https://api.github.com/users/BrianLandry/following{/other_user}","gists_url":"https://api.github.com/users/BrianLandry/gists{/gist_id}","starred_url":"https://api.github.com/users/BrianLandry/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BrianLandry/subscriptions","organizations_url":"https://api.github.com/users/BrianLandry/orgs","repos_url":"https://api.github.com/users/BrianLandry/repos","events_url":"https://api.github.com/users/BrianLandry/events{/privacy}","received_events_url":"https://api.github.com/users/BrianLandry/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-12-21T18:41:14Z","updated_at":"2015-12-21T18:41:14Z","closed_at":null,"body":"I was just setting up a development environment for FlowCal and had to manually install Pandas, matplotlib, and scipy. The following was done on a computer with Anaconda installed, with a working version of FlowCal 1.0.0b. This was done in an Anaconda virtual environment. \r\n\r\n````\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>python setup.py develop\r\nrunning develop\r\nrunning egg_info\r\ncreating FlowCal.egg-info\r\nwriting requirements to FlowCal.egg-info\\requires.txt\r\nwriting FlowCal.egg-info\\PKG-INFO\r\nwriting top-level names to FlowCal.egg-info\\top_level.txt\r\nwriting dependency_links to FlowCal.egg-info\\dependency_links.txt\r\nwriting manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nreading manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nwriting manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nrunning build_ext\r\nCreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\FlowCal.egg-link (link to .)\r\nAdding FlowCal 1.0.0b1 to easy-install.pth file\r\n\r\nInstalled c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal\r\nProcessing dependencies for FlowCal==1.0.0b1\r\nSearching for XlsxWriter>=0.7.3\r\nReading https://pypi.python.org/simple/XlsxWriter/\r\nBest match: XlsxWriter 0.7.7\r\nDownloading https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.7.7.tar.gz#md5=c68dca16927e2a919837c68ff63b1e5b\r\nProcessing XlsxWriter-0.7.7.tar.gz\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-7djqm6\\XlsxWriter-0.7.7\\setup.cfg\r\nRunning XlsxWriter-0.7.7\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-7djqm6\\XlsxWriter-0.7.7\\egg-dist-tmp-t9eykg\r\nzip_safe flag not set; analyzing archive contents...\r\nMoving xlsxwriter-0.7.7-py2.7.egg to c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nAdding xlsxwriter 0.7.7 to easy-install.pth file\r\nInstalling vba_extract.py script to C:\\Anaconda\\envs\\FlowCalDev\\Scripts\r\n\r\nInstalled c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\xlsxwriter-0.7.7-py2.7.egg\r\nSearching for xlrd>=0.9.3\r\nReading https://pypi.python.org/simple/xlrd/\r\nReading http://www.lexicon.net/sjmachin/xlrd.htm\r\nReading http://www.python-excel.org/\r\nBest match: xlrd 0.9.4\r\nDownloading https://pypi.python.org/packages/source/x/xlrd/xlrd-0.9.4.tar.gz#md5=911839f534d29fe04525ef8cd88fe865\r\nProcessing xlrd-0.9.4.tar.gz\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-7in0n1\\xlrd-0.9.4\\setup.cfg\r\nRunning xlrd-0.9.4\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-7in0n1\\xlrd-0.9.4\\egg-dist-tmp-oftmge\r\nzip_safe flag not set; analyzing archive contents...\r\nxlrd.xlsx: module references __file__\r\ncreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\xlrd-0.9.4-py2.7.egg\r\nExtracting xlrd-0.9.4-py2.7.egg to c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nAdding xlrd 0.9.4 to easy-install.pth file\r\nInstalling runxlrd.py script to C:\\Anaconda\\envs\\FlowCalDev\\Scripts\r\n\r\nInstalled c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\xlrd-0.9.4-py2.7.egg\r\nSearching for pandas>=0.16.2\r\nReading https://pypi.python.org/simple/pandas/\r\nBest match: pandas 0.17.1\r\nDownloading https://pypi.python.org/packages/source/p/pandas/pandas-0.17.1.zip#md5=ae0bdd2f1e6eae74a8462002a7eba289\r\nProcessing pandas-0.17.1.zip\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-3ru5rj\\pandas-0.17.1\\setup.cfg\r\nRunning pandas-0.17.1\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-3ru5rj\\pandas-0.17.1\\egg-dist-tmp-tds6y1\r\nwarning: no files found matching 'README.rst'\r\nno previously-included directories found matching 'doc\\build'\r\nwarning: no directories found matching 'examples'\r\nwarning: no previously-included files matching '*.so' found anywhere in distribution\r\nwarning: no previously-included files matching '*.pyd' found anywhere in distribution\r\nwarning: no previously-included files matching '*.pyc' found anywhere in distribution\r\nwarning: no previously-included files matching '*~' found anywhere in distribution\r\nwarning: no previously-included files matching '#*' found anywhere in distribution\r\nwarning: no previously-included files matching '.git*' found anywhere in distribution\r\nwarning: no previously-included files matching '.DS_Store' found anywhere in distribution\r\nwarning: no previously-included files matching '*.png' found anywhere in distribution\r\nUPDATING build\\lib.win-amd64-2.7\\pandas/_version.py\r\nset build\\lib.win-amd64-2.7\\pandas/_version.py to '0.17.1'\r\nerror: Setup script exited with error: Microsoft Visual C++ 9.0 is required (Unable to find vcvarsall.bat). Get it from http://aka.ms/vcpython27\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda update pandas\r\nError: package 'pandas' is not installed in C:\\Anaconda\\envs\\FlowCalDev\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda install pandas\r\nFetching package metadata: ....\r\nSolving package specifications: ..............\r\nPackage plan for installation in environment C:\\Anaconda\\envs\\FlowCalDev:\r\n\r\nThe following packages will be downloaded:\r\n\r\n    package                    |            build\r\n    ---------------------------|-----------------\r\n    pandas-0.17.1              |      np110py27_0         5.8 MB\r\n\r\nThe following NEW packages will be INSTALLED:\r\n\r\n    pandas:          0.17.1-np110py27_0\r\n    python-dateutil: 2.4.2-py27_0\r\n    pytz:            2015.7-py27_0\r\n    six:             1.10.0-py27_0\r\n\r\nProceed ([y]/n)? y\r\n\r\nFetching packages ...\r\npandas-0.17.1- 100% |###############################| Time: 0:00:01   3.18 MB/s\r\nExtracting packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\nLinking packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda install pandas\r\nFetching package metadata: ....\r\nSolving package specifications: ..............\r\n# All requested packages already installed.\r\n# packages in environment at C:\\Anaconda\\envs\\FlowCalDev:\r\n#\r\npandas                    0.17.1              np110py27_0\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>python setup.py develop\r\nrunning develop\r\nrunning egg_info\r\nwriting requirements to FlowCal.egg-info\\requires.txt\r\nwriting FlowCal.egg-info\\PKG-INFO\r\nwriting top-level names to FlowCal.egg-info\\top_level.txt\r\nwriting dependency_links to FlowCal.egg-info\\dependency_links.txt\r\nreading manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nwriting manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nrunning build_ext\r\nCreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\FlowCal.egg-link (link to .)\r\nFlowCal 1.0.0b1 is already the active version in easy-install.pth\r\n\r\nInstalled c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal\r\nProcessing dependencies for FlowCal==1.0.0b1\r\nSearching for scikit-learn>=0.16.1\r\nReading https://pypi.python.org/simple/scikit-learn/\r\nReading http://scikit-learn.org\r\nReading http://scikit-learn.sourceforge.net\r\nReading http://sourceforge.net/projects/scikit-learn/files/\r\nBest match: scikit-learn 0.17\r\nDownloading https://pypi.python.org/packages/2.7/s/scikit-learn/scikit-learn-0.17.win-amd64-py2.7.exe#md5=e7dc22a5cfe9ec9147f8c46b0f733f14\r\nProcessing scikit-learn-0.17.win-amd64-py2.7.exe\r\ncreating 'c:\\users\\brian\\appdata\\local\\temp\\easy_install-ebgsd4\\scikit_learn-0.17-py2.7-win-amd64.egg' and adding 'c:\\users\\brian\\appdata\\local\\temp\\easy_install-ebgsd4\\scikit_learn-0.17-py2.7-win-amd64.egg.tmp' to it\r\ncreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\scikit_learn-0.17-py2.7-win-amd64.egg\r\nExtracting scikit_learn-0.17-py2.7-win-amd64.egg to c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nAdding scikit-learn 0.17 to easy-install.pth file\r\n\r\nInstalled c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\scikit_learn-0.17-py2.7-win-amd64.egg\r\nSearching for palettable>=2.1.1\r\nReading https://pypi.python.org/simple/palettable/\r\nBest match: palettable 2.1.1\r\nDownloading https://pypi.python.org/packages/source/p/palettable/palettable-2.1.1.zip#md5=c4ba6d516f7bbf82a28b6fc464b17b23\r\nProcessing palettable-2.1.1.zip\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-jrj2lh\\palettable-2.1.1\\setup.cfg\r\nRunning palettable-2.1.1\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-jrj2lh\\palettable-2.1.1\\egg-dist-tmp-i7vxfh\r\nzip_safe flag not set; analyzing archive contents...\r\nMoving palettable-2.1.1-py2.7.egg to c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nAdding palettable 2.1.1 to easy-install.pth file\r\n\r\nInstalled c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\palettable-2.1.1-py2.7.egg\r\nSearching for matplotlib>=1.4.3\r\nReading https://pypi.python.org/simple/matplotlib/\r\nReading http://matplotlib.org\r\nReading http://matplotlib.org/users/installing.html\r\nReading http://matplotlib.sourceforge.net\r\nReading http://sourceforge.net/project/showfiles.php?group_id=80706\r\nReading http://sourceforge.net/project/showfiles.php?group_id=80706&package_id=82474\r\nReading http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.1.0/\r\nReading http://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.1.1/\r\nReading https://sourceforge.net/project/showfiles.php?group_id=80706&package_id=278194\r\nReading https://sourceforge.net/project/showfiles.php?group_id=80706&package_id=82474\r\nReading https://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-0.99.1/\r\nReading https://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-0.99.3/\r\nReading https://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0\r\nReading https://sourceforge.net/projects/matplotlib/files/matplotlib/matplotlib-1.0.1/\r\nBest match: matplotlib 1.5.0\r\nDownloading https://pypi.python.org/packages/source/m/matplotlib/matplotlib-1.5.0.tar.gz#md5=7952a539418ed77432aa4727409f24cf\r\nProcessing matplotlib-1.5.0.tar.gz\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-edyoj2\\matplotlib-1.5.0\\setup.cfg\r\nRunning matplotlib-1.5.0\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-edyoj2\\matplotlib-1.5.0\\egg-dist-tmp-aib33s\r\n============================================================================\r\nEdit setup.cfg to change the build options\r\n\r\nBUILDING MATPLOTLIB\r\n            matplotlib: yes [1.5.0]\r\n                python: yes [2.7.11 |Continuum Analytics, Inc.| (default,\r\n                        Dec  7 2015, 14:10:42) [MSC v.1500 64 bit (AMD64)]]\r\n              platform: yes [win32]\r\n\r\nREQUIRED DEPENDENCIES AND EXTENSIONS\r\n                 numpy: yes [version 1.10.1]\r\n              dateutil: yes [using dateutil version 2.4.2]\r\n                  pytz: yes [using pytz version 2015.7]\r\n                cycler: yes [cycler was not found. pip will attempt to\r\n                        install it after matplotlib.]\r\n               tornado: yes [tornado was not found. It is required for the\r\n                        WebAgg backend. pip/easy_install may attempt to\r\n                        install it after matplotlib.]\r\n             pyparsing: yes [pyparsing was not found. It is required for\r\n                        mathtext support. pip/easy_install may attempt to\r\n                        install it after matplotlib.]\r\n                libagg: yes [pkg-config information for 'libagg' could not\r\n                        be found. Using local copy.]\r\n              freetype: no  [The C/C++ header for freetype (ft2build.h)\r\n                        could not be found.  You may need to install the\r\n                        development package.]\r\n                   png: no  [The C/C++ header for png (png.h) could not be\r\n                        found.  You may need to install the development\r\n                        package.]\r\n                 qhull: yes [pkg-config information for 'qhull' could not be\r\n                        found. Using local copy.]\r\n\r\nOPTIONAL SUBPACKAGES\r\n           sample_data: yes [installing]\r\n              toolkits: yes [installing]\r\n                 tests: yes [nose 0.11.1 or later is required to run the\r\n                        matplotlib test suite. \"setup.py test\" will\r\n                        automatically download it. Install nose 0.11.1 or\r\n                        later to run matplotlib.test() / mock is required to\r\n                        run the matplotlib test suite. \"setup.py test\" will\r\n                        automatically download it. Install mock to run\r\n                        matplotlib.test()]\r\n        toolkits_tests: yes [nose 0.11.1 or later is required to run the\r\n                        matplotlib test suite. \"setup.py test\" will\r\n                        automatically download it. Install nose 0.11.1 or\r\n                        later to run matplotlib.test() / mock is required to\r\n                        run the matplotlib test suite. \"setup.py test\" will\r\n                        automatically download it. Install mock to run\r\n                        matplotlib.test()]\r\n\r\nOPTIONAL BACKEND EXTENSIONS\r\n                macosx: no  [Mac OS-X only]\r\n                qt5agg: no  [PyQt5 not found]\r\n                qt4agg: no  [PySide not found; PyQt4 not found]\r\n               gtk3agg: no  [Requires pygobject to be installed.]\r\n             gtk3cairo: no  [Requires cairocffi or pycairo to be installed.]\r\n                gtkagg: no  [Requires pygtk]\r\n                 tkagg: no  [The C/C++ header for Tk (tk.h) could not be\r\n                        found.  You may need to install the development\r\n                        package.]\r\n                 wxagg: no  [requires wxPython]\r\n                   gtk: no  [Requires pygtk]\r\n                   agg: yes [installing]\r\n                 cairo: no  [cairocffi or pycairo not found]\r\n             windowing: yes [installing, installing]\r\n\r\nOPTIONAL LATEX DEPENDENCIES\r\n                dvipng: no\r\n           ghostscript: no\r\n                 latex: no\r\n               pdftops: no\r\n\r\nOPTIONAL PACKAGE DATA\r\n                  dlls: no  [skipping due to configuration]\r\n\r\n============================================================================\r\n                        * The following required packages can not be built:\r\n                        * freetype, png\r\nerror: Setup script exited with 1\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda list\r\n# packages in environment at C:\\Anaconda\\envs\\FlowCalDev:\r\n#\r\nflowcal (c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal) 1.0.0b1                   <pip>\r\nmsvc_runtime              1.0.1                     vc9_0  [vc9]  defaults\r\nnumpy                     1.10.1                   py27_0    defaults\r\npalettable                2.1.1                     <pip>\r\npandas                    0.17.1              np110py27_0    defaults\r\npip                       7.1.2                    py27_0    defaults\r\npython                    2.7.11                        0    defaults\r\npython-dateutil           2.4.2                    py27_0    <unknown>\r\npytz                      2015.7                   py27_0    defaults\r\nscikit-learn              0.17                      <pip>\r\nsetuptools                19.1.1                   py27_0    defaults\r\nsix                       1.10.0                   py27_0    defaults\r\nwheel                     0.26.0                   py27_1    defaults\r\nxlrd                      0.9.4                     <pip>\r\nxlsxwriter                0.7.7                     <pip>\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda install matplotlib\r\nFetching package metadata: ....\r\nSolving package specifications: .................\r\nPackage plan for installation in environment C:\\Anaconda\\envs\\FlowCalDev:\r\n\r\nThe following packages will be downloaded:\r\n\r\n    package                    |            build\r\n    ---------------------------|-----------------\r\n    tk-8.5.18                  |            vc9_0         2.2 MB\r\n    cycler-0.9.0               |           py27_0           6 KB\r\n    matplotlib-1.5.0           |      np110py27_0         6.1 MB\r\n    ------------------------------------------------------------\r\n                                           Total:         8.3 MB\r\n\r\nThe following NEW packages will be INSTALLED:\r\n\r\n    cycler:     0.9.0-py27_0\r\n    jpeg:       8d-vc9_0          [vc9]\r\n    libpng:     1.6.17-vc9_1      [vc9]\r\n    libtiff:    4.0.6-vc9_1       [vc9]\r\n    matplotlib: 1.5.0-np110py27_0\r\n    openssl:    1.0.2d-vc9_0      [vc9]\r\n    pyparsing:  2.0.3-py27_0\r\n    pyqt:       4.11.4-py27_4\r\n    qt:         4.8.7-vc9_5       [vc9]\r\n    sip:        4.16.9-py27_2\r\n    tk:         8.5.18-vc9_0      [vc9]\r\n    zlib:       1.2.8-vc9_2       [vc9]\r\n\r\nProceed ([y]/n)? y\r\n\r\nFetching packages ...\r\ntk-8.5.18-vc9_ 100% |###############################| Time: 0:00:01   1.59 MB/s\r\ncycler-0.9.0-p 100% |###############################| Time: 0:00:00 553.00 kB/s\r\nmatplotlib-1.5 100% |###############################| Time: 0:00:02   2.74 MB/s\r\nExtracting packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\nLinking packages ...\r\n        1 file(s) copied.#######################################         |  83%\r\n[      COMPLETE      ]|##################################################| 100%\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda list\r\n# packages in environment at C:\\Anaconda\\envs\\FlowCalDev:\r\n#\r\ncycler                    0.9.0                    py27_0    defaults\r\nflowcal (c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal) 1.0.0b1                   <pip>\r\njpeg                      8d                        vc9_0  [vc9]  defaults\r\nlibpng                    1.6.17                    vc9_1  [vc9]  defaults\r\nlibtiff                   4.0.6                     vc9_1  [vc9]  defaults\r\nmatplotlib                1.5.0               np110py27_0    defaults\r\nmsvc_runtime              1.0.1                     vc9_0  [vc9]  defaults\r\nnumpy                     1.10.1                   py27_0    defaults\r\nopenssl                   1.0.2d                    vc9_0  [vc9]  defaults\r\npalettable                2.1.1                     <pip>\r\npandas                    0.17.1              np110py27_0    defaults\r\npip                       7.1.2                    py27_0    defaults\r\npyparsing                 2.0.3                    py27_0    <unknown>\r\npyqt                      4.11.4                   py27_4    defaults\r\npython                    2.7.11                        0    defaults\r\npython-dateutil           2.4.2                    py27_0    <unknown>\r\npytz                      2015.7                   py27_0    defaults\r\nqt                        4.8.7                     vc9_5  [vc9]  defaults\r\nscikit-learn              0.17                      <pip>\r\nsetuptools                19.1.1                   py27_0    defaults\r\nsip                       4.16.9                   py27_2    defaults\r\nsix                       1.10.0                   py27_0    defaults\r\ntk                        8.5.18                    vc9_0  [vc9]  defaults\r\nwheel                     0.26.0                   py27_1    defaults\r\nxlrd                      0.9.4                     <pip>\r\nxlsxwriter                0.7.7                     <pip>\r\nzlib                      1.2.8                     vc9_2  [vc9]  defaults\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>python setup.py develop\r\nrunning develop\r\nrunning egg_info\r\nwriting requirements to FlowCal.egg-info\\requires.txt\r\nwriting FlowCal.egg-info\\PKG-INFO\r\nwriting top-level names to FlowCal.egg-info\\top_level.txt\r\nwriting dependency_links to FlowCal.egg-info\\dependency_links.txt\r\nreading manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nwriting manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nrunning build_ext\r\nCreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\FlowCal.egg-link (link to .)\r\nFlowCal 1.0.0b1 is already the active version in easy-install.pth\r\n\r\nInstalled c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal\r\nProcessing dependencies for FlowCal==1.0.0b1\r\nSearching for scipy>=0.15.1\r\nReading https://pypi.python.org/simple/scipy/\r\nBest match: scipy 0.16.1\r\nDownloading https://pypi.python.org/packages/source/s/scipy/scipy-0.16.1.zip#md5=f473f9cd366daf4106003accff32c25f\r\nProcessing scipy-0.16.1.zip\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-4g3tvr\\scipy-0.16.1\\setup.cfg\r\nRunning scipy-0.16.1\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-4g3tvr\\scipy-0.16.1\\egg-dist-tmp-q_tyhw\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:635: UserWarning: Specified path C:/Program Files (x86)/Intel/Composer XE/mkl/lib/intel64 is invalid.\r\n  warnings.warn('Specified path %s is invalid.' % d)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:635: UserWarning: Specified path C:/Program Files (x86)/Intel/Composer XE/compiler/lib/intel64 is invalid.\r\n  warnings.warn('Specified path %s is invalid.' % d)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:635: UserWarning: Specified path C:/Program Files (x86)/Intel/Composer XE/mkl/include is invalid.\r\n  warnings.warn('Specified path %s is invalid.' % d)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:1552: UserWarning:\r\n    Atlas (http://math-atlas.sourceforge.net/) libraries not found.\r\n    Directories to search for the libraries can be specified in the\r\n    numpy/distutils/site.cfg file (section [atlas]) or by setting\r\n    the ATLAS environment variable.\r\n  warnings.warn(AtlasNotFoundError.__doc__)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:1563: UserWarning:\r\n    Lapack (http://www.netlib.org/lapack/) libraries not found.\r\n    Directories to search for the libraries can be specified in the\r\n    numpy/distutils/site.cfg file (section [lapack]) or by setting\r\n    the LAPACK environment variable.\r\n  warnings.warn(LapackNotFoundError.__doc__)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:1566: UserWarning:\r\n    Lapack (http://www.netlib.org/lapack/) sources not found.\r\n    Directories to search for the sources can be specified in the\r\n    numpy/distutils/site.cfg file (section [lapack_src]) or by setting\r\n    the LAPACK_SRC environment variable.\r\n  warnings.warn(LapackSrcNotFoundError.__doc__)\r\nRunning from scipy source directory.\r\nerror: no lapack/blas resources found\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda install scipy\r\nFetching package metadata: ....\r\nSolving package specifications: ................\r\nPackage plan for installation in environment C:\\Anaconda\\envs\\FlowCalDev:\r\n\r\nThe following packages will be downloaded:\r\n\r\n    package                    |            build\r\n    ---------------------------|-----------------\r\n    scipy-0.16.0               |      np110py27_0        83.7 MB\r\n\r\nThe following NEW packages will be INSTALLED:\r\n\r\n    scipy: 0.16.0-np110py27_0\r\n\r\nProceed ([y]/n)? y\r\n\r\nFetching packages ...\r\nscipy-0.16.0-n 100% |###############################| Time: 0:00:05  15.41 MB/s\r\nExtracting packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\nLinking packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>python setup.py develop\r\nrunning develop\r\nrunning egg_info\r\nwriting requirements to FlowCal.egg-info\\requires.txt\r\nwriting FlowCal.egg-info\\PKG-INFO\r\nwriting top-level names to FlowCal.egg-info\\top_level.txt\r\nwriting dependency_links to FlowCal.egg-info\\dependency_links.txt\r\nreading manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nwriting manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nrunning build_ext\r\nCreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\FlowCal.egg-link (link to .)\r\nFlowCal 1.0.0b1 is already the active version in easy-install.pth\r\n\r\nInstalled c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal\r\nProcessing dependencies for FlowCal==1.0.0b1\r\nSearching for scipy>=0.15.1\r\nReading https://pypi.python.org/simple/scipy/\r\nBest match: scipy 0.16.1\r\nDownloading https://pypi.python.org/packages/source/s/scipy/scipy-0.16.1.zip#md5=f473f9cd366daf4106003accff32c25f\r\nProcessing scipy-0.16.1.zip\r\nWriting c:\\users\\brian\\appdata\\local\\temp\\easy_install-4g3tvr\\scipy-0.16.1\\setup.cfg\r\nRunning scipy-0.16.1\\setup.py -q bdist_egg --dist-dir c:\\users\\brian\\appdata\\local\\temp\\easy_install-4g3tvr\\scipy-0.16.1\\egg-dist-tmp-q_tyhw\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:635: UserWarning: Specified path C:/Program Files (x86)/Intel/Composer XE/mkl/lib/intel64 is invalid.\r\n  warnings.warn('Specified path %s is invalid.' % d)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:635: UserWarning: Specified path C:/Program Files (x86)/Intel/Composer XE/compiler/lib/intel64 is invalid.\r\n  warnings.warn('Specified path %s is invalid.' % d)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:635: UserWarning: Specified path C:/Program Files (x86)/Intel/Composer XE/mkl/include is invalid.\r\n  warnings.warn('Specified path %s is invalid.' % d)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:1552: UserWarning:\r\n    Atlas (http://math-atlas.sourceforge.net/) libraries not found.\r\n    Directories to search for the libraries can be specified in the\r\n    numpy/distutils/site.cfg file (section [atlas]) or by setting\r\n    the ATLAS environment variable.\r\n  warnings.warn(AtlasNotFoundError.__doc__)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:1563: UserWarning:\r\n    Lapack (http://www.netlib.org/lapack/) libraries not found.\r\n    Directories to search for the libraries can be specified in the\r\n    numpy/distutils/site.cfg file (section [lapack]) or by setting\r\n    the LAPACK environment variable.\r\n  warnings.warn(LapackNotFoundError.__doc__)\r\nC:\\Anaconda\\envs\\FlowCalDev\\lib\\site-packages\\numpy\\distutils\\system_info.py:1566: UserWarning:\r\n    Lapack (http://www.netlib.org/lapack/) sources not found.\r\n    Directories to search for the sources can be specified in the\r\n    numpy/distutils/site.cfg file (section [lapack_src]) or by setting\r\n    the LAPACK_SRC environment variable.\r\n  warnings.warn(LapackSrcNotFoundError.__doc__)\r\nRunning from scipy source directory.\r\nerror: no lapack/blas resources found\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>conda install scipy\r\nFetching package metadata: ....\r\nSolving package specifications: ................\r\nPackage plan for installation in environment C:\\Anaconda\\envs\\FlowCalDev:\r\n\r\nThe following packages will be downloaded:\r\n\r\n    package                    |            build\r\n    ---------------------------|-----------------\r\n    scipy-0.16.0               |      np110py27_0        83.7 MB\r\n\r\nThe following NEW packages will be INSTALLED:\r\n\r\n    scipy: 0.16.0-np110py27_0\r\n\r\nProceed ([y]/n)? y\r\n\r\nFetching packages ...\r\nscipy-0.16.0-n 100% |###############################| Time: 0:00:05  15.41 MB/s\r\nExtracting packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\nLinking packages ...\r\n[      COMPLETE      ]|##################################################| 100%\r\n\r\n[FlowCalDev] C:\\Users\\brian\\OneDrive\\Work\\TaborLab\\Code\\FlowCal>python setup.py develop\r\nrunning develop\r\nrunning egg_info\r\nwriting requirements to FlowCal.egg-info\\requires.txt\r\nwriting FlowCal.egg-info\\PKG-INFO\r\nwriting top-level names to FlowCal.egg-info\\top_level.txt\r\nwriting dependency_links to FlowCal.egg-info\\dependency_links.txt\r\nreading manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nwriting manifest file 'FlowCal.egg-info\\SOURCES.txt'\r\nrunning build_ext\r\nCreating c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\FlowCal.egg-link (link to .)\r\nFlowCal 1.0.0b1 is already the active version in easy-install.pth\r\n\r\nInstalled c:\\users\\brian\\onedrive\\work\\taborlab\\code\\flowcal\r\nProcessing dependencies for FlowCal==1.0.0b1\r\nSearching for xlsxwriter==0.7.7\r\nBest match: xlsxwriter 0.7.7\r\nProcessing xlsxwriter-0.7.7-py2.7.egg\r\nxlsxwriter 0.7.7 is already the active version in easy-install.pth\r\nInstalling vba_extract.py script to C:\\Anaconda\\envs\\FlowCalDev\\Scripts\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\xlsxwriter-0.7.7-py2.7.egg\r\nSearching for xlrd==0.9.4\r\nBest match: xlrd 0.9.4\r\nProcessing xlrd-0.9.4-py2.7.egg\r\nxlrd 0.9.4 is already the active version in easy-install.pth\r\nInstalling runxlrd.py script to C:\\Anaconda\\envs\\FlowCalDev\\Scripts\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\xlrd-0.9.4-py2.7.egg\r\nSearching for pandas==0.17.1\r\nBest match: pandas 0.17.1\r\nAdding pandas 0.17.1 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for scikit-learn==0.17\r\nBest match: scikit-learn 0.17\r\nProcessing scikit_learn-0.17-py2.7-win-amd64.egg\r\nscikit-learn 0.17 is already the active version in easy-install.pth\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\scikit_learn-0.17-py2.7-win-amd64.egg\r\nSearching for palettable==2.1.1\r\nBest match: palettable 2.1.1\r\nProcessing palettable-2.1.1-py2.7.egg\r\npalettable 2.1.1 is already the active version in easy-install.pth\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\\palettable-2.1.1-py2.7.egg\r\nSearching for matplotlib==1.5.0\r\nBest match: matplotlib 1.5.0\r\nAdding matplotlib 1.5.0 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for scipy==0.16.0\r\nBest match: scipy 0.16.0\r\nAdding scipy 0.16.0 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for numpy==1.10.1\r\nBest match: numpy 1.10.1\r\nAdding numpy 1.10.1 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for pytz==2015.7\r\nBest match: pytz 2015.7\r\nAdding pytz 2015.7 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for python-dateutil==2.4.2\r\nBest match: python-dateutil 2.4.2\r\nAdding python-dateutil 2.4.2 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for pyparsing==2.0.3\r\nBest match: pyparsing 2.0.3\r\nAdding pyparsing 2.0.3 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for cycler==0.9.0\r\nBest match: cycler 0.9.0\r\nAdding cycler 0.9.0 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nSearching for six==1.10.0\r\nBest match: six 1.10.0\r\nAdding six 1.10.0 to easy-install.pth file\r\n\r\nUsing c:\\anaconda\\envs\\flowcaldev\\lib\\site-packages\r\nFinished processing dependencies for FlowCal==1.0.0b1\r\n````"}}