{"action":"created","issue":{"url":"https://api.github.com/repos/funnell/reactomefi/issues/15","labels_url":"https://api.github.com/repos/funnell/reactomefi/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/funnell/reactomefi/issues/15/comments","events_url":"https://api.github.com/repos/funnell/reactomefi/issues/15/events","html_url":"https://github.com/funnell/reactomefi/issues/15","id":102233106,"number":15,"title":"ReactomeFINetwork with use.linkers = TRUE","user":{"login":"kmezhoud","id":4458195,"avatar_url":"https://avatars.githubusercontent.com/u/4458195?v=3","gravatar_id":"","url":"https://api.github.com/users/kmezhoud","html_url":"https://github.com/kmezhoud","followers_url":"https://api.github.com/users/kmezhoud/followers","following_url":"https://api.github.com/users/kmezhoud/following{/other_user}","gists_url":"https://api.github.com/users/kmezhoud/gists{/gist_id}","starred_url":"https://api.github.com/users/kmezhoud/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kmezhoud/subscriptions","organizations_url":"https://api.github.com/users/kmezhoud/orgs","repos_url":"https://api.github.com/users/kmezhoud/repos","events_url":"https://api.github.com/users/kmezhoud/events{/privacy}","received_events_url":"https://api.github.com/users/kmezhoud/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-08-20T20:46:04Z","updated_at":"2015-08-21T06:21:27Z","closed_at":null,"body":"HI,\r\nI get error with I set  use linkers = TRUE for all version. Any suggestion? Thanks Karim\r\n\r\n network <- ReactomeFINetwork(\"2013\", GeneList, use.linkers=TRUE )\r\nOpening and ending tag mismatch: HR line 34 and body\r\nOpening and ending tag mismatch: HR line 1 and html\r\nPremature end of data in tag body line 1\r\nPremature end of data in tag html line 1\r\nError: 1: Opening and ending tag mismatch: HR line 34 and body\r\n2: Opening and ending tag mismatch: HR line 1 and html\r\n3: Premature end of data in tag body line 1\r\n4: Premature end of data in tag html line 1"},"comment":{"url":"https://api.github.com/repos/funnell/reactomefi/issues/comments/133301604","html_url":"https://github.com/funnell/reactomefi/issues/15#issuecomment-133301604","issue_url":"https://api.github.com/repos/funnell/reactomefi/issues/15","id":133301604,"user":{"login":"funnell","id":381464,"avatar_url":"https://avatars.githubusercontent.com/u/381464?v=3","gravatar_id":"","url":"https://api.github.com/users/funnell","html_url":"https://github.com/funnell","followers_url":"https://api.github.com/users/funnell/followers","following_url":"https://api.github.com/users/funnell/following{/other_user}","gists_url":"https://api.github.com/users/funnell/gists{/gist_id}","starred_url":"https://api.github.com/users/funnell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/funnell/subscriptions","organizations_url":"https://api.github.com/users/funnell/orgs","repos_url":"https://api.github.com/users/funnell/repos","events_url":"https://api.github.com/users/funnell/events{/privacy}","received_events_url":"https://api.github.com/users/funnell/received_events","type":"User","site_admin":false},"created_at":"2015-08-21T06:21:27Z","updated_at":"2015-08-21T06:21:27Z","body":"Hi Karim,\r\n\r\nSorry about this. Unfortunately it seems linkers=TRUE is broken. The package connects to the ReactomeFI plugin's web service, and it turns out that the linkers=TRUE functionality doesn't work on the web service. The Cytoscape plugin still works, because this functionality has been re-implemented in the plugin code itself!\r\nI'll need to have a look at how the plugin code implements linker gene functionality."}}