{"action":"created","comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/comments/24500886","id":24500886,"diff_hunk":"@@ -14,3 +14,53 @@ inclusion.\n * Make sure you have added the necessary tests for your changes and they pass.\n * Open a [pull request](https://help.github.com/articles/using-pull-requests)\n   with these changes.\n+\n+## What to contribute\n+\n+* Wrappers for new tools\n+* Visualization Plugins\n+* New datatypes\n+* Updates for tools\n+* Enhancements for tools (e.g. supporting new parameters)\n+* Bug fixes\n+* Documentation improvements\n+* New test cases\n+\n+### Abandoned Tools\n+\n+* The IUC is happy to adopt tools that you (the developer) are abandoning.\n+* If there are tools that you find useful but seem to be abandoned and not\n+  updated, you're welcome to create an issue recommending that the IUC adopt\n+  that tool.\n+\n+## What not to contribute\n+\n+* Things already wrapped and currently maintained by other users\n+* Wrappers without tests\n+\n+\n+## Tests\n+\n+Contributed tools should include test cases for all tools. They need not\n+necessarily cover all uses of the program, but should ensure that it is\n+generally working. The Galaxy Wiki has a\n+[page](https://wiki.galaxyproject.org/Admin/Tools/WritingTests) on writing\n+tests.\n+\n+The IUC strongly recommends testing with [planemo](https://github.com/galaxyproject/planemo/), which provides a simple command line utility for testing functionality\n+\n+```console\n+$ planemo test --install_galaxy my_tool.xml\n+```\n+\n+## Requirements for Contributions\n+\n+Before a PR will be accepted, the IUC has some requirements on the\n+submitted code (which we will be happy to help you achieve if you need the\n+assistance).\n+\n+* Tools must contain tests (and test-data)\n+* The tests must pass\n+* The tools should pass linting by planemo (`planemo lint tool.xml`)\n+* If there's a relevant paper for the tool, it should be cited with a [citation](https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Ccitations.3E_tag_set) block","path":"CONTRIBUTING.md","position":52,"original_position":52,"commit_id":"f722d6bd3e4140d0fac2869509d28fb08f267242","original_commit_id":"f722d6bd3e4140d0fac2869509d28fb08f267242","user":{"login":"nsoranzo","id":4924623,"avatar_url":"https://avatars.githubusercontent.com/u/4924623?v=3","gravatar_id":"","url":"https://api.github.com/users/nsoranzo","html_url":"https://github.com/nsoranzo","followers_url":"https://api.github.com/users/nsoranzo/followers","following_url":"https://api.github.com/users/nsoranzo/following{/other_user}","gists_url":"https://api.github.com/users/nsoranzo/gists{/gist_id}","starred_url":"https://api.github.com/users/nsoranzo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nsoranzo/subscriptions","organizations_url":"https://api.github.com/users/nsoranzo/orgs","repos_url":"https://api.github.com/users/nsoranzo/repos","events_url":"https://api.github.com/users/nsoranzo/events{/privacy}","received_events_url":"https://api.github.com/users/nsoranzo/received_events","type":"User","site_admin":false},"body":"I would say either \"in a citation block\" or \"with a \\<citation> tag\".","created_at":"2015-02-11T15:04:48Z","updated_at":"2015-02-11T15:04:48Z","html_url":"https://github.com/galaxyproject/tools-iuc/pull/36#discussion_r24500886","pull_request_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36","_links":{"self":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/comments/24500886"},"html":{"href":"https://github.com/galaxyproject/tools-iuc/pull/36#discussion_r24500886"},"pull_request":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36"}}},"pull_request":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36","id":28930010,"html_url":"https://github.com/galaxyproject/tools-iuc/pull/36","diff_url":"https://github.com/galaxyproject/tools-iuc/pull/36.diff","patch_url":"https://github.com/galaxyproject/tools-iuc/pull/36.patch","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/36","number":36,"state":"open","locked":false,"title":"Fix some of TODOs on the contribution doc","user":{"login":"erasche","id":458683,"avatar_url":"https://avatars.githubusercontent.com/u/458683?v=3","gravatar_id":"","url":"https://api.github.com/users/erasche","html_url":"https://github.com/erasche","followers_url":"https://api.github.com/users/erasche/followers","following_url":"https://api.github.com/users/erasche/following{/other_user}","gists_url":"https://api.github.com/users/erasche/gists{/gist_id}","starred_url":"https://api.github.com/users/erasche/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/erasche/subscriptions","organizations_url":"https://api.github.com/users/erasche/orgs","repos_url":"https://api.github.com/users/erasche/repos","events_url":"https://api.github.com/users/erasche/events{/privacy}","received_events_url":"https://api.github.com/users/erasche/received_events","type":"User","site_admin":false},"body":"See #35, there were some TODOs that needed to be addressed. I just made some fairly generic changes, IUC members please comment on this and we can get them all patched in!","created_at":"2015-02-09T15:37:47Z","updated_at":"2015-02-11T15:04:48Z","closed_at":null,"merged_at":null,"merge_commit_sha":"9fb8e92f1b5f18a957e9e8806c788f6f6c7af285","assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36/commits","review_comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36/comments","review_comment_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/comments/{number}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/36/comments","statuses_url":"https://api.github.com/repos/galaxyproject/tools-iuc/statuses/f722d6bd3e4140d0fac2869509d28fb08f267242","head":{"label":"galaxyproject:contributing","ref":"contributing","sha":"f722d6bd3e4140d0fac2869509d28fb08f267242","user":{"login":"galaxyproject","id":7937847,"avatar_url":"https://avatars.githubusercontent.com/u/7937847?v=3","gravatar_id":"","url":"https://api.github.com/users/galaxyproject","html_url":"https://github.com/galaxyproject","followers_url":"https://api.github.com/users/galaxyproject/followers","following_url":"https://api.github.com/users/galaxyproject/following{/other_user}","gists_url":"https://api.github.com/users/galaxyproject/gists{/gist_id}","starred_url":"https://api.github.com/users/galaxyproject/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/galaxyproject/subscriptions","organizations_url":"https://api.github.com/users/galaxyproject/orgs","repos_url":"https://api.github.com/users/galaxyproject/repos","events_url":"https://api.github.com/users/galaxyproject/events{/privacy}","received_events_url":"https://api.github.com/users/galaxyproject/received_events","type":"Organization","site_admin":false},"repo":{"id":23992530,"name":"tools-iuc","full_name":"galaxyproject/tools-iuc","owner":{"login":"galaxyproject","id":7937847,"avatar_url":"https://avatars.githubusercontent.com/u/7937847?v=3","gravatar_id":"","url":"https://api.github.com/users/galaxyproject","html_url":"https://github.com/galaxyproject","followers_url":"https://api.github.com/users/galaxyproject/followers","following_url":"https://api.github.com/users/galaxyproject/following{/other_user}","gists_url":"https://api.github.com/users/galaxyproject/gists{/gist_id}","starred_url":"https://api.github.com/users/galaxyproject/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/galaxyproject/subscriptions","organizations_url":"https://api.github.com/users/galaxyproject/orgs","repos_url":"https://api.github.com/users/galaxyproject/repos","events_url":"https://api.github.com/users/galaxyproject/events{/privacy}","received_events_url":"https://api.github.com/users/galaxyproject/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/galaxyproject/tools-iuc","description":"Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission","fork":false,"url":"https://api.github.com/repos/galaxyproject/tools-iuc","forks_url":"https://api.github.com/repos/galaxyproject/tools-iuc/forks","keys_url":"https://api.github.com/repos/galaxyproject/tools-iuc/keys{/key_id}","collaborators_url":"https://api.github.com/repos/galaxyproject/tools-iuc/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/galaxyproject/tools-iuc/teams","hooks_url":"https://api.github.com/repos/galaxyproject/tools-iuc/hooks","issue_events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/events{/number}","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/events","assignees_url":"https://api.github.com/repos/galaxyproject/tools-iuc/assignees{/user}","branches_url":"https://api.github.com/repos/galaxyproject/tools-iuc/branches{/branch}","tags_url":"https://api.github.com/repos/galaxyproject/tools-iuc/tags","blobs_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/refs{/sha}","trees_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/trees{/sha}","statuses_url":"https://api.github.com/repos/galaxyproject/tools-iuc/statuses/{sha}","languages_url":"https://api.github.com/repos/galaxyproject/tools-iuc/languages","stargazers_url":"https://api.github.com/repos/galaxyproject/tools-iuc/stargazers","contributors_url":"https://api.github.com/repos/galaxyproject/tools-iuc/contributors","subscribers_url":"https://api.github.com/repos/galaxyproject/tools-iuc/subscribers","subscription_url":"https://api.github.com/repos/galaxyproject/tools-iuc/subscription","commits_url":"https://api.github.com/repos/galaxyproject/tools-iuc/commits{/sha}","git_commits_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/commits{/sha}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/comments{/number}","issue_comment_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/{number}","contents_url":"https://api.github.com/repos/galaxyproject/tools-iuc/contents/{+path}","compare_url":"https://api.github.com/repos/galaxyproject/tools-iuc/compare/{base}...{head}","merges_url":"https://api.github.com/repos/galaxyproject/tools-iuc/merges","archive_url":"https://api.github.com/repos/galaxyproject/tools-iuc/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/galaxyproject/tools-iuc/downloads","issues_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues{/number}","pulls_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls{/number}","milestones_url":"https://api.github.com/repos/galaxyproject/tools-iuc/milestones{/number}","notifications_url":"https://api.github.com/repos/galaxyproject/tools-iuc/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/labels{/name}","releases_url":"https://api.github.com/repos/galaxyproject/tools-iuc/releases{/id}","created_at":"2014-09-13T11:18:49Z","updated_at":"2015-02-11T13:52:09Z","pushed_at":"2015-02-11T13:52:09Z","git_url":"git://github.com/galaxyproject/tools-iuc.git","ssh_url":"git@github.com:galaxyproject/tools-iuc.git","clone_url":"https://github.com/galaxyproject/tools-iuc.git","svn_url":"https://github.com/galaxyproject/tools-iuc","homepage":"https://wiki.galaxyproject.org/IUC","size":21371,"stargazers_count":11,"watchers_count":11,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":10,"mirror_url":null,"open_issues_count":18,"forks":10,"open_issues":18,"watchers":11,"default_branch":"master"}},"base":{"label":"galaxyproject:master","ref":"master","sha":"33d122d56914cdf3fc6bcab140d192217a8683e0","user":{"login":"galaxyproject","id":7937847,"avatar_url":"https://avatars.githubusercontent.com/u/7937847?v=3","gravatar_id":"","url":"https://api.github.com/users/galaxyproject","html_url":"https://github.com/galaxyproject","followers_url":"https://api.github.com/users/galaxyproject/followers","following_url":"https://api.github.com/users/galaxyproject/following{/other_user}","gists_url":"https://api.github.com/users/galaxyproject/gists{/gist_id}","starred_url":"https://api.github.com/users/galaxyproject/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/galaxyproject/subscriptions","organizations_url":"https://api.github.com/users/galaxyproject/orgs","repos_url":"https://api.github.com/users/galaxyproject/repos","events_url":"https://api.github.com/users/galaxyproject/events{/privacy}","received_events_url":"https://api.github.com/users/galaxyproject/received_events","type":"Organization","site_admin":false},"repo":{"id":23992530,"name":"tools-iuc","full_name":"galaxyproject/tools-iuc","owner":{"login":"galaxyproject","id":7937847,"avatar_url":"https://avatars.githubusercontent.com/u/7937847?v=3","gravatar_id":"","url":"https://api.github.com/users/galaxyproject","html_url":"https://github.com/galaxyproject","followers_url":"https://api.github.com/users/galaxyproject/followers","following_url":"https://api.github.com/users/galaxyproject/following{/other_user}","gists_url":"https://api.github.com/users/galaxyproject/gists{/gist_id}","starred_url":"https://api.github.com/users/galaxyproject/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/galaxyproject/subscriptions","organizations_url":"https://api.github.com/users/galaxyproject/orgs","repos_url":"https://api.github.com/users/galaxyproject/repos","events_url":"https://api.github.com/users/galaxyproject/events{/privacy}","received_events_url":"https://api.github.com/users/galaxyproject/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/galaxyproject/tools-iuc","description":"Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission","fork":false,"url":"https://api.github.com/repos/galaxyproject/tools-iuc","forks_url":"https://api.github.com/repos/galaxyproject/tools-iuc/forks","keys_url":"https://api.github.com/repos/galaxyproject/tools-iuc/keys{/key_id}","collaborators_url":"https://api.github.com/repos/galaxyproject/tools-iuc/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/galaxyproject/tools-iuc/teams","hooks_url":"https://api.github.com/repos/galaxyproject/tools-iuc/hooks","issue_events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/events{/number}","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/events","assignees_url":"https://api.github.com/repos/galaxyproject/tools-iuc/assignees{/user}","branches_url":"https://api.github.com/repos/galaxyproject/tools-iuc/branches{/branch}","tags_url":"https://api.github.com/repos/galaxyproject/tools-iuc/tags","blobs_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/refs{/sha}","trees_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/trees{/sha}","statuses_url":"https://api.github.com/repos/galaxyproject/tools-iuc/statuses/{sha}","languages_url":"https://api.github.com/repos/galaxyproject/tools-iuc/languages","stargazers_url":"https://api.github.com/repos/galaxyproject/tools-iuc/stargazers","contributors_url":"https://api.github.com/repos/galaxyproject/tools-iuc/contributors","subscribers_url":"https://api.github.com/repos/galaxyproject/tools-iuc/subscribers","subscription_url":"https://api.github.com/repos/galaxyproject/tools-iuc/subscription","commits_url":"https://api.github.com/repos/galaxyproject/tools-iuc/commits{/sha}","git_commits_url":"https://api.github.com/repos/galaxyproject/tools-iuc/git/commits{/sha}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/comments{/number}","issue_comment_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/{number}","contents_url":"https://api.github.com/repos/galaxyproject/tools-iuc/contents/{+path}","compare_url":"https://api.github.com/repos/galaxyproject/tools-iuc/compare/{base}...{head}","merges_url":"https://api.github.com/repos/galaxyproject/tools-iuc/merges","archive_url":"https://api.github.com/repos/galaxyproject/tools-iuc/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/galaxyproject/tools-iuc/downloads","issues_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues{/number}","pulls_url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls{/number}","milestones_url":"https://api.github.com/repos/galaxyproject/tools-iuc/milestones{/number}","notifications_url":"https://api.github.com/repos/galaxyproject/tools-iuc/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/labels{/name}","releases_url":"https://api.github.com/repos/galaxyproject/tools-iuc/releases{/id}","created_at":"2014-09-13T11:18:49Z","updated_at":"2015-02-11T13:52:09Z","pushed_at":"2015-02-11T13:52:09Z","git_url":"git://github.com/galaxyproject/tools-iuc.git","ssh_url":"git@github.com:galaxyproject/tools-iuc.git","clone_url":"https://github.com/galaxyproject/tools-iuc.git","svn_url":"https://github.com/galaxyproject/tools-iuc","homepage":"https://wiki.galaxyproject.org/IUC","size":21371,"stargazers_count":11,"watchers_count":11,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":10,"mirror_url":null,"open_issues_count":18,"forks":10,"open_issues":18,"watchers":11,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36"},"html":{"href":"https://github.com/galaxyproject/tools-iuc/pull/36"},"issue":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/36"},"comments":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/36/comments"},"review_comments":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36/comments"},"review_comment":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/comments/{number}"},"commits":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/36/commits"},"statuses":{"href":"https://api.github.com/repos/galaxyproject/tools-iuc/statuses/f722d6bd3e4140d0fac2869509d28fb08f267242"}}}}