{"action":"created","issue":{"url":"https://api.github.com/repos/bigdataviewer/SPIM_Registration/issues/41","labels_url":"https://api.github.com/repos/bigdataviewer/SPIM_Registration/issues/41/labels{/name}","comments_url":"https://api.github.com/repos/bigdataviewer/SPIM_Registration/issues/41/comments","events_url":"https://api.github.com/repos/bigdataviewer/SPIM_Registration/issues/41/events","html_url":"https://github.com/bigdataviewer/SPIM_Registration/issues/41","id":73419497,"number":41,"title":"runtime exception opening czi in Multiview Registration","user":{"login":"emmenlau","id":1098087,"avatar_url":"https://avatars.githubusercontent.com/u/1098087?v=3","gravatar_id":"","url":"https://api.github.com/users/emmenlau","html_url":"https://github.com/emmenlau","followers_url":"https://api.github.com/users/emmenlau/followers","following_url":"https://api.github.com/users/emmenlau/following{/other_user}","gists_url":"https://api.github.com/users/emmenlau/gists{/gist_id}","starred_url":"https://api.github.com/users/emmenlau/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/emmenlau/subscriptions","organizations_url":"https://api.github.com/users/emmenlau/orgs","repos_url":"https://api.github.com/users/emmenlau/repos","events_url":"https://api.github.com/users/emmenlau/events{/privacy}","received_events_url":"https://api.github.com/users/emmenlau/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":29,"created_at":"2015-05-05T20:14:45Z","updated_at":"2015-05-06T14:18:21Z","closed_at":"2015-05-06T13:48:06Z","body":"I'm using Multiview Registration, trying to fuse a large czi series. It opens the file with Bio-Formats, which at first works fine, and the XML gets created. But when I start interest point detection, I get (attached) error about a RuntimeException in spim.fiji.spimdata.imgloaders.LightSheetZ1ImgLoader.getFloatImage().\r\n\r\nZeissCZIReader initializing L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi\r\n[WARN] Unknown AcquisitionMode value 'SPIM' will be stored as \"Other\"\r\n[WARN] Unknown AcquisitionMode value 'SPIM' will be stored as \"Other\"\r\n[WARN] Unknown DetectorType value 'Camera' will be stored as \"Other\"\r\n[WARN] Unknown DetectorType value 'Camera' will be stored as \"Other\"\r\njava.lang.RuntimeException: Could not load 'L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi' viewId=0, tpId=0: java.lang.RuntimeException: Could not load 'L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi' viewId=0, tpId=0\r\n\tat spim.fiji.spimdata.imgloaders.LightSheetZ1ImgLoader.getFloatImage(LightSheetZ1ImgLoader.java:86)\r\n\tat spim.fiji.plugin.interestpointdetection.DifferenceOf.openAndDownsample(DifferenceOf.java:422)\r\n\tat spim.fiji.plugin.interestpointdetection.DifferenceOfGaussian.findInterestPoints(DifferenceOfGaussian.java:97)\r\n\tat spim.fiji.plugin.Interest_Point_Detection.detectInterestPoints(Interest_Point_Detection.java:167)\r\n\tat spim.fiji.plugin.Interest_Point_Detection.detectInterestPoints(Interest_Point_Detection.java:86)\r\n\tat spim.fiji.spimdata.explorer.popup.DetectInterestPointsPopup$MyActionListener$1.run(DetectInterestPointsPopup.java:55)\r\n\tat java.lang.Thread.run(Unknown Source)\r\n\r\n\r\n\r\nUsing spimdata version: 0.9-revision\r\nUsing spimreconstruction version: 2.3.4\r\nangles selected: 0, 90, 180, 270\r\nchannels selected: Laser 561, Laser 488\r\nilluminations selected: 0, 1\r\nTimepoints selected: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46\r\nClosing czi: L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi\r\nCannot load CUDA JNA library.\r\n(Tue May 05 14:21:23 GMT+02:00 2015): Requesting Img from ImgLoader (tp=0, setup=0)\r\nInvestigating file 'L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi'.\r\nAn error occured parsing the main meta data: java.lang.NullPointerException\r\n. Stopping.\r\nFailed to analyze file: 'L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi'.\r\nAn error occured (DOG): java.lang.RuntimeException: Could not load 'L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi' viewId=0, tpId=0: java.lang.RuntimeException: Could not load 'L:\\MarioEmmenlauer\\Datasets\\drlGFP-lmo2Red-7ss\\.\\.\\drlGFP lmo2Red 7ss.czi' viewId=0, tpId=0\r\nFailed to segment angleId: 0 channelId: 0 illumId: 0. Continuing with next one.\r\nOpening of files took: 0 sec.\r\nDetecting interest points took: 0 sec.\r\n(Tue May 05 16:10:03 GMT+02:00 2015): Updating metadata ... \r\n"},"comment":{"url":"https://api.github.com/repos/bigdataviewer/SPIM_Registration/issues/comments/99484182","html_url":"https://github.com/bigdataviewer/SPIM_Registration/issues/41#issuecomment-99484182","issue_url":"https://api.github.com/repos/bigdataviewer/SPIM_Registration/issues/41","id":99484182,"user":{"login":"dscho","id":127790,"avatar_url":"https://avatars.githubusercontent.com/u/127790?v=3","gravatar_id":"","url":"https://api.github.com/users/dscho","html_url":"https://github.com/dscho","followers_url":"https://api.github.com/users/dscho/followers","following_url":"https://api.github.com/users/dscho/following{/other_user}","gists_url":"https://api.github.com/users/dscho/gists{/gist_id}","starred_url":"https://api.github.com/users/dscho/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dscho/subscriptions","organizations_url":"https://api.github.com/users/dscho/orgs","repos_url":"https://api.github.com/users/dscho/repos","events_url":"https://api.github.com/users/dscho/events{/privacy}","received_events_url":"https://api.github.com/users/dscho/received_events","type":"User","site_admin":false},"created_at":"2015-05-06T14:18:21Z","updated_at":"2015-05-06T14:18:21Z","body":"> SCIFIO is making a really serious concerted effort to be better about that (right @hinerm? ;-).\r\n\r\nAnd a much appreciated effort at that. I just wish more scientists would support that effort actively."}}