{"action":"created","issue":{"url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/9","labels_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/9/comments","events_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/9/events","html_url":"https://github.com/VDBWRAIR/bio_pieces/issues/9","id":67397411,"number":9,"title":"Test amos2fastq","user":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-04-09T16:21:23Z","updated_at":"2015-04-09T17:02:38Z","closed_at":null,"body":"There should be some functional test for VDBWRAIR/pathdiscov/issues/207\r\nFor example, the outputs of `amos2fastq` should be a subset of all the input `fastq` records.\r\nProbably, running `Ray2` on the `amos2fastq` outputs should result in a `contigs.fasta` file equal to the original `contigs.fasta` file from the first run. I'm not totally sure, though. The second AMOS file will be different (because read order will be different).\r\n\r\nA test like this uses an external validator for correctness, rather than my own understanding of how my program should work, which is good."},"comment":{"url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/comments/91292488","html_url":"https://github.com/VDBWRAIR/bio_pieces/issues/9#issuecomment-91292488","issue_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/9","id":91292488,"user":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"created_at":"2015-04-09T17:02:38Z","updated_at":"2015-04-09T17:02:38Z","body":"That looks better. \r\nDo you know if Ray will always use all reads to build its contigs? "}}