{"action":"created","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/573","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/573/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/573/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/573/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/573","id":41770301,"number":573,"title":"Installing bcbio on Amazon Cloud with starcluster","user":{"login":"michaelxu2014","id":1004430,"avatar_url":"https://avatars.githubusercontent.com/u/1004430?v=3","gravatar_id":"","url":"https://api.github.com/users/michaelxu2014","html_url":"https://github.com/michaelxu2014","followers_url":"https://api.github.com/users/michaelxu2014/followers","following_url":"https://api.github.com/users/michaelxu2014/following{/other_user}","gists_url":"https://api.github.com/users/michaelxu2014/gists{/gist_id}","starred_url":"https://api.github.com/users/michaelxu2014/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/michaelxu2014/subscriptions","organizations_url":"https://api.github.com/users/michaelxu2014/orgs","repos_url":"https://api.github.com/users/michaelxu2014/repos","events_url":"https://api.github.com/users/michaelxu2014/events{/privacy}","received_events_url":"https://api.github.com/users/michaelxu2014/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":12,"created_at":"2014-09-03T00:19:34Z","updated_at":"2015-10-03T05:53:50Z","closed_at":"2015-10-03T05:53:50Z","body":"Hi, \r\n\r\nI am trying to install bcbio on Amazon cloud with starcluster. At first, I created a cluster with starcluster and then I log into the head node to install the isolated version. I found the bcbio installation will temporally download all third party packages to the root volume even thought I specified the path to bcbio to an attached big volume. Unfortunately, the root volume on the head node is only 8GB. When bcbio installation was downloaded GRCh37-bwa.tar.xz, it was failed due to no space. \r\n\r\nIs there anyway to install bcbio on the SGE cluster by starcluster? Or is there anyway to run bcbio on a cluster on amazon cloud? Thanks!  "},"comment":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/comments/145206836","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/573#issuecomment-145206836","issue_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/573","id":145206836,"user":{"login":"roryk","id":414586,"avatar_url":"https://avatars.githubusercontent.com/u/414586?v=3","gravatar_id":"","url":"https://api.github.com/users/roryk","html_url":"https://github.com/roryk","followers_url":"https://api.github.com/users/roryk/followers","following_url":"https://api.github.com/users/roryk/following{/other_user}","gists_url":"https://api.github.com/users/roryk/gists{/gist_id}","starred_url":"https://api.github.com/users/roryk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/roryk/subscriptions","organizations_url":"https://api.github.com/users/roryk/orgs","repos_url":"https://api.github.com/users/roryk/repos","events_url":"https://api.github.com/users/roryk/events{/privacy}","received_events_url":"https://api.github.com/users/roryk/received_events","type":"User","site_admin":false},"created_at":"2015-10-03T05:53:50Z","updated_at":"2015-10-03T05:53:50Z","body":"Thanks @michaelxu2014, hope you eventually got it up and going."}}