{"action":"closed","issue":{"url":"https://api.github.com/repos/OpenTreeOfLife/germinator/issues/13","labels_url":"https://api.github.com/repos/OpenTreeOfLife/germinator/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/OpenTreeOfLife/germinator/issues/13/comments","events_url":"https://api.github.com/repos/OpenTreeOfLife/germinator/issues/13/events","html_url":"https://github.com/OpenTreeOfLife/germinator/issues/13","id":55494869,"number":13,"title":"Document use of Newick in all opentree tools","user":{"login":"jar398","id":2035858,"avatar_url":"https://avatars.githubusercontent.com/u/2035858?v=3","gravatar_id":"","url":"https://api.github.com/users/jar398","html_url":"https://github.com/jar398","followers_url":"https://api.github.com/users/jar398/followers","following_url":"https://api.github.com/users/jar398/following{/other_user}","gists_url":"https://api.github.com/users/jar398/gists{/gist_id}","starred_url":"https://api.github.com/users/jar398/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jar398/subscriptions","organizations_url":"https://api.github.com/users/jar398/orgs","repos_url":"https://api.github.com/users/jar398/repos","events_url":"https://api.github.com/users/jar398/events{/privacy}","received_events_url":"https://api.github.com/users/jar398/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-01-26T15:26:08Z","updated_at":"2015-11-09T17:59:11Z","closed_at":"2015-11-09T17:59:11Z","body":"See\r\nhttps://github.com/OpenTreeOfLife/treemachine/issues/147\r\n\r\ntreemachine, peyotl, and smasher all generate Newick and have to make decisions on how to export OTT taxon 'names' to the subset of Newick (http://evolution.genetics.washington.edu/phylip/newick_doc.html) that dendropy and NEXUS (http://sysbio.oxfordjournals.org/content/46/4/590.full.pdf) handle.\r\n"}}