{"action":"created","issue":{"url":"https://api.github.com/repos/fidelram/deepTools/issues/75","labels_url":"https://api.github.com/repos/fidelram/deepTools/issues/75/labels{/name}","comments_url":"https://api.github.com/repos/fidelram/deepTools/issues/75/comments","events_url":"https://api.github.com/repos/fidelram/deepTools/issues/75/events","html_url":"https://github.com/fidelram/deepTools/issues/75","id":68731314,"number":75,"title":"SVG output for bamFingerprint via file ext.","user":{"login":"mpi-pebert","id":5285064,"avatar_url":"https://avatars.githubusercontent.com/u/5285064?v=3","gravatar_id":"","url":"https://api.github.com/users/mpi-pebert","html_url":"https://github.com/mpi-pebert","followers_url":"https://api.github.com/users/mpi-pebert/followers","following_url":"https://api.github.com/users/mpi-pebert/following{/other_user}","gists_url":"https://api.github.com/users/mpi-pebert/gists{/gist_id}","starred_url":"https://api.github.com/users/mpi-pebert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mpi-pebert/subscriptions","organizations_url":"https://api.github.com/users/mpi-pebert/orgs","repos_url":"https://api.github.com/users/mpi-pebert/repos","events_url":"https://api.github.com/users/mpi-pebert/events{/privacy}","received_events_url":"https://api.github.com/users/mpi-pebert/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"fidelram","id":4964309,"avatar_url":"https://avatars.githubusercontent.com/u/4964309?v=3","gravatar_id":"","url":"https://api.github.com/users/fidelram","html_url":"https://github.com/fidelram","followers_url":"https://api.github.com/users/fidelram/followers","following_url":"https://api.github.com/users/fidelram/following{/other_user}","gists_url":"https://api.github.com/users/fidelram/gists{/gist_id}","starred_url":"https://api.github.com/users/fidelram/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fidelram/subscriptions","organizations_url":"https://api.github.com/users/fidelram/orgs","repos_url":"https://api.github.com/users/fidelram/repos","events_url":"https://api.github.com/users/fidelram/events{/privacy}","received_events_url":"https://api.github.com/users/fidelram/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2015-04-15T16:37:08Z","updated_at":"2015-04-27T11:09:31Z","closed_at":null,"body":"The `bamFingerprint` tool does not produce SVG output based on the file extension `.svg` only (i.e. simply calling `bamFingerprint --plotFile foofile.svg`); it appears as if the setting for the output file format is overwritten somewhere, since calling `bamFingerprint --plotFile foofile.svg --plotFileFormat svg` does generate an SVG output plot.\r\nI am using deepTools 1.5.8.1 and matplotlib 1.3.1. Notably, setting SVG output via the file extension works for other deepTools, e.g., `bamCorrelate --plotFile foofile.svg` produces an SVG output file."},"comment":{"url":"https://api.github.com/repos/fidelram/deepTools/issues/comments/96611092","html_url":"https://github.com/fidelram/deepTools/issues/75#issuecomment-96611092","issue_url":"https://api.github.com/repos/fidelram/deepTools/issues/75","id":96611092,"user":{"login":"fidelram","id":4964309,"avatar_url":"https://avatars.githubusercontent.com/u/4964309?v=3","gravatar_id":"","url":"https://api.github.com/users/fidelram","html_url":"https://github.com/fidelram","followers_url":"https://api.github.com/users/fidelram/followers","following_url":"https://api.github.com/users/fidelram/following{/other_user}","gists_url":"https://api.github.com/users/fidelram/gists{/gist_id}","starred_url":"https://api.github.com/users/fidelram/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fidelram/subscriptions","organizations_url":"https://api.github.com/users/fidelram/orgs","repos_url":"https://api.github.com/users/fidelram/repos","events_url":"https://api.github.com/users/fidelram/events{/privacy}","received_events_url":"https://api.github.com/users/fidelram/received_events","type":"User","site_admin":false},"created_at":"2015-04-27T11:09:31Z","updated_at":"2015-04-27T11:09:31Z","body":"I could not reproduce this behaviour in the master branch. "}}