{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/server/issues/500","labels_url":"https://api.github.com/repos/ga4gh/server/issues/500/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/server/issues/500/comments","events_url":"https://api.github.com/repos/ga4gh/server/issues/500/events","html_url":"https://github.com/ga4gh/server/issues/500","id":96096938,"number":500,"title":"Local index files from remote fetch not getting cleaned up property","user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"milestone":null,"comments":4,"created_at":"2015-07-20T16:05:44Z","updated_at":"2015-07-23T14:33:16Z","closed_at":null,"body":"On the current `develop` branch:\r\n```\r\n$ git status -s\r\n$ nosetests tests/end_to_end/test_remote_fetch.py\r\n..\r\n----------------------------------------------------------------------\r\nRan 2 tests in 3.429s\r\n\r\nOK\r\n$ git status -s\r\n?? chr1.vcf.gz.tbi\r\n?? wgEncodeUwRepliSeqBg02esG1bAlnRep1_sample.bam.bai\r\n```\r\nWe should investigate why these downloaded index files are not getting cleaned up properly."},"comment":{"url":"https://api.github.com/repos/ga4gh/server/issues/comments/124125181","html_url":"https://github.com/ga4gh/server/issues/500#issuecomment-124125181","issue_url":"https://api.github.com/repos/ga4gh/server/issues/500","id":124125181,"user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"created_at":"2015-07-23T14:33:16Z","updated_at":"2015-07-23T14:33:16Z","body":"Oh, good call!  The commit before the file cache merge `068caf51beaf1ad840c6ab3ab84b8a2b9dc3865e` does not feature this issue but the one in which the cache is merged in `40bdc60eee6e82981abb8f18e27f7be88c7193d9` does.  So it indeed looks like the file handle cache introduced this problem."}}