{"action":"created","issue":{"url":"https://api.github.com/repos/standage/AEGeAn/issues/140","labels_url":"https://api.github.com/repos/standage/AEGeAn/issues/140/labels{/name}","comments_url":"https://api.github.com/repos/standage/AEGeAn/issues/140/comments","events_url":"https://api.github.com/repos/standage/AEGeAn/issues/140/events","html_url":"https://github.com/standage/AEGeAn/issues/140","id":97789191,"number":140,"title":"Unit tests fail on Linux","user":{"login":"satta","id":27732,"avatar_url":"https://avatars.githubusercontent.com/u/27732?v=3","gravatar_id":"","url":"https://api.github.com/users/satta","html_url":"https://github.com/satta","followers_url":"https://api.github.com/users/satta/followers","following_url":"https://api.github.com/users/satta/following{/other_user}","gists_url":"https://api.github.com/users/satta/gists{/gist_id}","starred_url":"https://api.github.com/users/satta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/satta/subscriptions","organizations_url":"https://api.github.com/users/satta/orgs","repos_url":"https://api.github.com/users/satta/repos","events_url":"https://api.github.com/users/satta/events{/privacy}","received_events_url":"https://api.github.com/users/satta/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":13,"created_at":"2015-07-28T19:58:46Z","updated_at":"2015-12-15T17:06:37Z","closed_at":null,"body":"When I build AEGeAn 0.13 with GenomeTools 1.5.6 on Debian Jessie (just adapting the prefix to `/usr` and running `make -j3`) and run the unit tests, one of them fails:\r\n```\r\n[vagrant@jessie64:~/AEGeAn] $ bin/unittests                                  ± [master] [0]\r\nAEGeAn Unit Tests\r\n    AEGeAn::AgnPseudogeneFixVisitor            | SUCCESS\r\n        | Gene, no pseudo attribute            | PASS\r\n        | Gene, bogus pseudo attribute         | PASS\r\n        | Corrected pseudogene                 | PASS\r\n        | Uncorrected pseudogene               | PASS\r\n        | iLocus with gene & pseudogene        | PASS\r\n    AEGeAn::AgnInferParentStream               | SUCCESS\r\n        | Test 1: basic                        | PASS\r\n        | Test 2: 2 top-level                  | PASS\r\n        | Test 3: 2 top-level, inferred parent | PASS\r\n        | Test 4: multichild                   | PASS\r\n        | Test 5: multichild, inferred parent  | PASS\r\n    AEGeAn::AgnMrnaRepVisitor                  | SUCCESS\r\n        | TAIR10: test 1                       | PASS\r\n    AEGeAn::AgnRemoveChildrenVisitor           | SUCCESS\r\n        | Test 1: grape (Gaze)                 | PASS\r\n    AEGeAn::AgnTranscriptClique                | SUCCESS\r\n        | simple check                         | PASS\r\n        | two mRNAs                            | PASS\r\n        | copy check                           | PASS\r\n    AEGeAn::AgnCliquePair                      | SUCCESS\r\n        | perfect match vs. self               | PASS\r\n        | CDS match                            | PASS\r\n        | non-match                            | PASS\r\n    AEGeAn::AgnLocus                           | SUCCESS\r\n        | grape test 1                         | PASS\r\n        | grape test 2                         | PASS\r\n        | filter by CDS length                 | PASS\r\n        | filter by exon number                | PASS\r\n    AEGeAn::AgnFilterStream                    | SUCCESS\r\n        | mRNA                                 | PASS\r\n        | exon                                 | PASS\r\n        | CDS                                  | PASS\r\n        | intron                               | PASS\r\n        | exon+intron                          | PASS\r\n        | CDS+intron                           | PASS\r\n    AEGeAn::AgnInferCDSVisitor                 | SUCCESS\r\n        | grape test sans UTRs                 | PASS\r\n        | grape test with UTRs, strand check   | PASS\r\n        | grape test 3                         | PASS\r\n        | grape test 4                         | PASS\r\n    AEGeAn::AgnInferExonsVisitor               | SUCCESS\r\n        | grape test sans UTRs                 | PASS\r\n        | grape test with UTRs, strand check   | PASS\r\n        | grape test 3                         | PASS\r\n        | grape test 4                         | PASS\r\n    AEGeAn::AgnGeneStream                      | SUCCESS\r\n        | 1 gene, 2 mRNAs                      | PASS\r\n        | 1 gene, 2 mRNAs (one sans CDS)       | PASS\r\n        | mRNA only                            | PASS\r\n    AEGeAn::AgnLocusStream                     | SUCCESS\r\n        | grape test (pairwise)                | PASS\r\n        | Pdom test (pairwise)                 | PASS\r\n        | Amel test (Augustus)                 | PASS\r\n        | Delta=200                            | PASS\r\n    AEGeAn::AgnGaevalVisitor                   | FAILURE\r\n        | range intersect (1)                  | PASS\r\n        | range intersect (2)                  | PASS\r\n        | range intersect (3)                  | PASS\r\n        | union (1)                            | PASS\r\n        | union (2)                            | PASS\r\n        | union (3)                            | PASS\r\n        | intersect (1)                        | PASS\r\n        | intersect (2)                        | PASS\r\n        | intersect (3)                        | PASS\r\n        | intersect (4)                        | PASS\r\n        | intersect (5)                        | PASS\r\n        | calculate coverage                   | PASS\r\n        | introns confirmed (no gaps)          | PASS\r\n        | introns confirmed (gaps)             | PASS\r\n        | calculate integrity                  | FAIL\r\n\r\n===== Unit tests failed for 1/13 classes! =====\r\n```"},"comment":{"url":"https://api.github.com/repos/standage/AEGeAn/issues/comments/164829018","html_url":"https://github.com/standage/AEGeAn/issues/140#issuecomment-164829018","issue_url":"https://api.github.com/repos/standage/AEGeAn/issues/140","id":164829018,"user":{"login":"satta","id":27732,"avatar_url":"https://avatars.githubusercontent.com/u/27732?v=3","gravatar_id":"","url":"https://api.github.com/users/satta","html_url":"https://github.com/satta","followers_url":"https://api.github.com/users/satta/followers","following_url":"https://api.github.com/users/satta/following{/other_user}","gists_url":"https://api.github.com/users/satta/gists{/gist_id}","starred_url":"https://api.github.com/users/satta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/satta/subscriptions","organizations_url":"https://api.github.com/users/satta/orgs","repos_url":"https://api.github.com/users/satta/repos","events_url":"https://api.github.com/users/satta/events{/privacy}","received_events_url":"https://api.github.com/users/satta/received_events","type":"User","site_admin":false},"created_at":"2015-12-15T17:06:37Z","updated_at":"2015-12-15T17:06:37Z","body":"I usually do not customize a locale. I'll try again later and let you know if the problem is still there."}}