{"push_id":566664668,"size":2,"distinct_size":2,"ref":"refs/heads/merge/develop/breaking","head":"853efba973cdc6f1b8d17d10bf2efd98758013d5","before":"2245f4398f054e7be1d36eb4a0bd249303630da7","commits":[{"sha":"32cfcdf00464952e788bf94c15af5b8adc79f110","author":{"email":"1b0087cc485c4451b94efa48c21943700a256ebb@gmail.com","name":"Snoopy Crime Cop"},"message":"merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only: PR 3446 (DB changes, incl. move Pixels.params to Image.series)","distinct":true,"url":"https://api.github.com/repos/snoopycrimecop/openmicroscopy/commits/32cfcdf00464952e788bf94c15af5b8adc79f110"},{"sha":"853efba973cdc6f1b8d17d10bf2efd98758013d5","author":{"email":"1b0087cc485c4451b94efa48c21943700a256ebb@gmail.com","name":"Snoopy Crime Cop"},"message":"merge develop -Dnone -Ibreaking -Eexclude -Ssuccess-only\n\nRepository: openmicroscopy/openmicroscopy\nExcluded PRs:\n  # PR 3440 dominikl 'Show GraphException message' (user: dominikl)\n  # PR 3422 melissalinkert 'Remove deprecated setRoot(Object)' (user: melissalinkert)\n  # PR 3371 joshmoore 'Set omero.pixeldata.dispose=true by default (See #11675)' (user: joshmoore)\n  # PR 3086 will-moore 'Create image by tiling 12459' (user: will-moore)\n  # PR 3383 joshmoore 'Index map annotations (Fix #12318)' (user: joshmoore)\n  # PR 3439 sbesson '5-0-7 version history (rebased onto develop)' (user: sbesson)\n  # PR 3447 dominikl 'Customizable batch image export filename' (user: dominikl)\n  # PR 3448 jburel 'Opengl' (user: jburel)\n  # PR 3410 mtbc 'fix #10969: rearrange DoAll's in cli.py' (user: mtbc)\n  # PR 3399 mtbc 'fix #11084: combine original file deletions into fewer transactions' (user: mtbc)\n  # PR 2585 aleksandra-tarkowska 'making time_zone and first_day_of_week configurable' (exclude comment)\n  # PR 3435 manics 'Update fallback IPython to 1.2.1' (user: manics)\n  # PR 3431 manics 'Fix windows tables' (user: manics)\n  # PR 3181 joshmoore 'Update to Hibernate 3.6 (See trac2570)' (label: exclude)\n  # PR 3418 jburel 'Plate to QA' (user: jburel)\n  # PR 3430 sbesson 'Add CLI subcommand to generate graph report' (user: sbesson)\n  # PR 3436 jburel 'File opening' (user: jburel)\n  # PR 3323 mtbc '5.0 graphs implementation deprecation' (user: mtbc)\n  # PR 2363 dominikl 'Java Gateway API' (label: exclude)\n  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)\n  # PR 3403 joshmoore 'Misc cleanups' (user: joshmoore)\n  # PR 3432 lucalianas 'Enable selective ROIs visualization on web viewer' (user: lucalianas)\n  # PR 3386 ximenesuk 'Add extra event to return logfile id early.' (user: ximenesuk)\n  # PR 3433 will-moore 'Delete - KEEP children' (user: will-moore)\n  # PR 3427 jburel 'Omero to imagej' (user: jburel)\n  # PR 3442 jburel 'QA CLI' (user: jburel)\n  # PR 3444 jburel 'Cancel all DV' (user: jburel)\n  # PR 3333 will-moore 'Map annotation web' (user: will-moore)\n  # PR 3373 dominikl 'Serverside omero client properties' (exclude comment)\n  # PR 3402 joshmoore 'Colorizer' (user: joshmoore)\n  # PR 3372 sbesson 'Do not load graphs by default in getProjects/getDatasets' (user: sbesson)\n  # PR 3357 mtbc 'make graph traversal more robust to poor transaction isolation' (user: mtbc)\n  # PR 3441 aleksandra-tarkowska 'adding \"on\" as a True value in toBoolean' (user: aleksandra-tarkowska)\n  # PR 3342 dominikl 'General pane followup' (user: dominikl)\n  # PR 3450 jburel 'Plate run' (user: jburel)\n  # PR 3098 aleksandra-tarkowska 'Metadata reimport' (user: aleksandra-tarkowska)\n  # PR 3443 ximenesuk 'Reduce logging in pyinotify monitor' (user: ximenesuk)\n  # PR 3380 joshmoore 'Copy bftools to bin/ with omero' (user: joshmoore)\n  # PR 3408 joshmoore 'Disable extra artifacts with package-extra=false (rebased onto develop)' (user: joshmoore)\n  # PR 3434 aleksandra-tarkowska 'Email properties' (user: aleksandra-tarkowska)\n  # PR 3384 joshmoore 'Disable companion attachments (Fix #12519)' (user: joshmoore)\n  # PR 3449 sbesson 'CLI nginx template improvements' (user: sbesson)\n  # PR 3420 will-moore 'Chgrp not owner' (user: will-moore)\n  # PR 3338 dominikl 'Mapannotations insight' (user: dominikl)\n  # PR 3412 will-moore 'Spw download enabled develop' (user: will-moore)\n  # PR 3141 dpwrussell 'jstree upgrade (Functionality Review Only)' (status: failure)\n  # PR 3000 jballanc 'Update artifacts for Lucene, Hibernate, and Spring' (user: jballanc)\n  # PR 3395 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)\n  # PR 3416 manics 'Fix _execute_child on Windows Python 2.7+' (user: manics)\n  # PR 3445 jburel 'Tagging ome tiff' (user: jburel)\n  # PR 3042 will-moore 'Download dataset project' (user: will-moore)\n  # PR 3396 dominikl 'Split view figure, z/t plane' (user: dominikl)\nAlready up-to-date.\n\nMerged PRs:\n  # PR 3446 mtbc 'DB changes, incl. move Pixels.params to Image.series'\n\nRepository: openmicroscopy/bioformats\nExcluded PRs:\n  # PR 1560 bramalingam 'Add support for Overlays (ImageJ)' (user: bramalingam)\n  # PR 1564 bjoernthiel 'Enforce LF line endings on text files' (user: bjoernthiel)\n  # PR 1573 melissalinkert 'Fixes for less common Woolz data types' (user: melissalinkert)\n  # PR 1572 rleigh-dundee 'C++: Fixes and additions for OME-TIFF' (user: rleigh-dundee)\n  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)\n  # PR 1177 rleigh-dundee 'specification: Add metadata for HDF5 embedding' (exclude comment)\n  # PR 1309 melissalinkert 'Allow tile-based access of large JPEG-2000 images' (exclude comment)\n  # PR 1561 melissalinkert 'Fix file grouping and dimension swapping in ImageJ macros' (user: melissalinkert)\n  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)\n  # PR 1571 melissalinkert 'FlowSight: default to 1 channel if channel tags are missing' (user: melissalinkert)\n  # PR 1567 PaulVanSchayck 'jpeg EXIF reading' (user: PaulVanSchayck)\n  # PR 1551 joshmoore 'Colorizer' (user: joshmoore)\n  # PR 1574 melissalinkert 'Add version history for 5.0.7 (rebased onto develop)' (user: melissalinkert)\n  # PR 1161 sommerc 'Initial CellH5 Reader class' (user: sommerc)\n  # PR 1522 melissalinkert 'NFS performance' (user: melissalinkert)\n  # PR 1510 snoopycrimecop 'Update copyright headers' (user: snoopycrimecop)\n  # PR 1562 melissalinkert 'Remove deprecated methods' (user: melissalinkert)\n  # PR 1508 melissalinkert 'Revert to using java.text.SimpleDateFormat for retrieving timestamps' (user: melissalinkert)\n  # PR 1426 qidane 'Initial Rendering Definitions schema' (exclude comment)\n  # PR 1015 qidane 'Messy binary' (exclude comment)\n  # PR 1502 melissalinkert 'Inveon: fix offsets for files larger than 2GB' (user: melissalinkert)\n  # PR 1566 bramalingam 'Roi handler ome tiff provenance' (user: bramalingam)\n  # PR 1526 bramalingam 'RoiHandler :  display label text ROI's in ImageJ' (user: bramalingam)\nUpdating 2f899bb..0a9a751\nPreviously merged:\n  # PR 1565 qidane 'Release 2015 01'\n  # PR 1570 sbesson 'Fix remaining DM_BOXED_PRIMITIVE_FOR_PARSING warnings'\n  # PR 1541 melissalinkert 'JPEG-2000: make sure the entire box is removed'\n  # PR 1547 melissalinkert 'JPEG: fix calculations for YCbCr correction'\n  # PR 1549 melissalinkert 'Zeiss CZI: set plane positions using pixel row/column values'\n  # PR 1553 melissalinkert 'Fix NDPI and Leica SCN metadata issues exposed by Virtual Microscope'\n  # PR 1554 melissalinkert 'ND2: add the PFS offset and status to the original metadata table'\n  # PR 1559 hflynn 'Expanding building instructions for netbeans'\n  # PR 1569 melissalinkert 'Add Maven module names to components page'\n  # PR 1381 melissalinkert 'Parse physical pixel sizes from CellSens .vsi datasets'\n  # PR 1407 melissalinkert 'TIFF: fix plane count calculation for pyramids with multiple planes'\n  # PR 1568 ehrenfeu 'Fix at least one typo.'\n  # PR 1552 jburel 'Save file'\n  # PR 1555 melissalinkert 'bfconvert: fix indexing for z, timepoint, and channel flags'\n  # PR 1479 qidane 'Updated XSLT for units conversion'\n  # PR 1540 rleigh-dundee 'C++: Complete OME-XML serialisation to and from OME model objects'\n  # PR 1529 melissalinkert 'Another round of Nikon ND2 metadata issues'\n  # PR 1443 joshmoore 'Genshi source (embedded)'\n  # PR 1542 rleigh-dundee 'cpp: bioformats: Remove VariantPixelBuffer at method'\n  # PR 1539 jburel 'ImageID'\n  # PR 1538 melissalinkert 'Metamorph: reset timepoint count if timelapse was not performed'\n  # PR 1537 melissalinkert 'Metamorph: fix type of UIC1 tag 49 metadata'\n  # PR 1536 melissalinkert 'Deltavision: allow for ND filters stored as percent fractions'\n  # PR 1527 melissalinkert 'Fix duplicate or missing copyrights'\n\nRepository: ome/scripts\nAlready up-to-date.\n\nRepository: openmicroscopy/ome-documentation\nExcluded PRs:\n  # PR 1097 hflynn 'Initial 2015-01 additions' (user: hflynn)\n  # PR 1089 sbesson 'Document the Python integration library' (user: sbesson)\nUpdating 8df9464..803155c\nPreviously merged:\n  # PR 1098 sbesson 'Autogen clients deprecation'\n  # PR 1095 manics 'SELinux walkthrough fixes (rebased onto dev_5_0) (rebased onto develop)'\n  # PR 1091 sbesson 'Fix link to Homebrew installation script'\n  # PR 1093 sbesson 'Mention autogen_docs script in OMERO autogen jobs documentation'\n  # PR 1087 joshmoore 'Add cp/_rm section for 5.0.7 (rebased onto develop)'\n  # PR 1086 manics 'SELinux walkthrough fixes'\n  # PR 1085 sbesson 'Workaround argparse help formatter dash limitation'\n  # PR 1083 sbesson 'Put the auto-generation script under version control'\n  # PR 1070 mtbc 'adjust createdb commands to specify Unicode databases'\n  # PR 1082 ximenesuk 'Document DropBox on untested Windows (develop)'\n  # PR 1081 mtbc 'OMERO model object reference (rebased from dev_5_0)'\n  # PR 1041 joshmoore 'Units documentation'\n  # PR 1077 mtbc 'fix URL for Lucene Index Toolbox'\n  # PR 1075 manics 'Update OMERO.tables 5.1 docs'\n\nGenerated by OME-5.1-breaking-push#289 (http://ci.openmicroscopy.org/job/OME-5.1-breaking-push/289/)","distinct":true,"url":"https://api.github.com/repos/snoopycrimecop/openmicroscopy/commits/853efba973cdc6f1b8d17d10bf2efd98758013d5"}]}