{"action":"created","issue":{"url":"https://api.github.com/repos/famuvie/breedR/issues/58","labels_url":"https://api.github.com/repos/famuvie/breedR/issues/58/labels{/name}","comments_url":"https://api.github.com/repos/famuvie/breedR/issues/58/comments","events_url":"https://api.github.com/repos/famuvie/breedR/issues/58/events","html_url":"https://github.com/famuvie/breedR/issues/58","id":119203649,"number":58,"title":"airemlf90' had status 123 ","user":{"login":"JanKowalczyk","id":5999751,"avatar_url":"https://avatars.githubusercontent.com/u/5999751?v=3","gravatar_id":"","url":"https://api.github.com/users/JanKowalczyk","html_url":"https://github.com/JanKowalczyk","followers_url":"https://api.github.com/users/JanKowalczyk/followers","following_url":"https://api.github.com/users/JanKowalczyk/following{/other_user}","gists_url":"https://api.github.com/users/JanKowalczyk/gists{/gist_id}","starred_url":"https://api.github.com/users/JanKowalczyk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JanKowalczyk/subscriptions","organizations_url":"https://api.github.com/users/JanKowalczyk/orgs","repos_url":"https://api.github.com/users/JanKowalczyk/repos","events_url":"https://api.github.com/users/JanKowalczyk/events{/privacy}","received_events_url":"https://api.github.com/users/JanKowalczyk/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-11-27T14:21:40Z","updated_at":"2015-11-27T14:46:29Z","closed_at":null,"body":"After upgrading to the new breedR version from 0.10-17 to 0.10-19 the error message appearing as follows:\r\n\r\n```R\r\nres.ar1 <- remlf90(fixed = phe_X ~ poch,\r\n                 # random = ~ block,\r\n                   genetic = list(model = 'add_animal',\r\n                                  pedigree = data[, c('self','dad','mum')],\r\n                                  id = 'self'),\r\n                   spatial = list(model = 'AR',\r\n                                  coord = data[, c('x','y')] ,\r\n                                  rho = c(.8,.8)), data = data,  method='em')\r\n\r\nNo specification of initial variances.\r\n \tUsing default value of 1 for all variance components.\r\n \tSee ?breedR.getOption.\r\n\r\nError: zmienna is.null(attr(reml.out, \"status\")) nie ma wartości TRUE\r\nIn addition: Warning message:\r\nrunning command '\"C:/Users/Lenovo/Documents/R/win-library/3.2/breedR/bin/airemlf90\"' had status 123 \r\n```\r\nBelow is the session info\r\n\r\n```R\r\n> sessionInfo()\r\nR version 3.2.2 (2015-08-14)\r\nPlatform: x86_64-w64-mingw32/x64 (64-bit)\r\nRunning under: Windows 8 x64 (build 9200)\r\n\r\nlocale:\r\n[1] LC_COLLATE=Polish_Poland.1250  LC_CTYPE=Polish_Poland.1250   \r\n[3] LC_MONETARY=Polish_Poland.1250 LC_NUMERIC=C                  \r\n[5] LC_TIME=Polish_Poland.1250    \r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices utils     datasets  methods   base     \r\n\r\nother attached packages:\r\n[1] ggplot2_1.0.1  breedR_0.10-19 sp_1.2-1       Matrix_1.2-2  \r\n\r\nloaded via a namespace (and not attached):\r\n [1] Rcpp_0.12.2      knitr_1.11       magrittr_1.5     splines_3.2.2   \r\n [5] MASS_7.3-43      munsell_0.4.2    colorspace_1.2-6 pedigreemm_0.3-3\r\n [9] lattice_0.20-33  minqa_1.2.4      stringr_1.0.0    highr_0.5.1     \r\n[13] plyr_1.8.3       tools_3.2.2      grid_3.2.2       gtable_0.1.2    \r\n[17] nlme_3.1-122     lme4_1.1-10      digest_0.6.8     nloptr_1.0.4    \r\n[21] reshape2_1.4.1   stringi_1.0-1    scales_0.3.0     proto_0.3-10 \r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/famuvie/breedR/issues/comments/160153252","html_url":"https://github.com/famuvie/breedR/issues/58#issuecomment-160153252","issue_url":"https://api.github.com/repos/famuvie/breedR/issues/58","id":160153252,"user":{"login":"famuvie","id":5693966,"avatar_url":"https://avatars.githubusercontent.com/u/5693966?v=3","gravatar_id":"","url":"https://api.github.com/users/famuvie","html_url":"https://github.com/famuvie","followers_url":"https://api.github.com/users/famuvie/followers","following_url":"https://api.github.com/users/famuvie/following{/other_user}","gists_url":"https://api.github.com/users/famuvie/gists{/gist_id}","starred_url":"https://api.github.com/users/famuvie/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/famuvie/subscriptions","organizations_url":"https://api.github.com/users/famuvie/orgs","repos_url":"https://api.github.com/users/famuvie/repos","events_url":"https://api.github.com/users/famuvie/events{/privacy}","received_events_url":"https://api.github.com/users/famuvie/received_events","type":"User","site_admin":false},"created_at":"2015-11-27T14:46:29Z","updated_at":"2015-11-27T14:46:29Z","body":"Jan, please give me the output of `Sys.getenv('R_ARCH')`\n\nAlso, please try this:\n```R\nunlink(list.files(system.file('bin', package='breedR'), full.names = T))\nremlf90(y~x, data = data.frame(x=1,y=1))\n```\n\nThis removes the fortran programs. When you run `remlf90()` again, it\nwill ask you to download them again.\nSay yes, and tell me the result.\n\nThanks\n        ƒacu.-\n\n\nEl 27/11/2015 a las 15:21, JanKowalczyk escribió:\n>\n> After upgrading to the new breedR version from 0.10-17 to 0.10-19 the\n> error message appearing as follows:\n>\n> res.ar1 <- remlf90(fixed = phe_X ~ poch,\n>                  # random = ~ block,\n>                    genetic = list(model = 'add_animal',\n>                                   pedigree = data[, c('self','dad','mum')],\n>                                   id = 'self'),\n>                    spatial = list(model = 'AR',\n>                                   coord = data[, c('x','y')] ,\n>                                   rho = c(.8,.8)), data = data,  method='em')\n>\n> No specification of initial variances.\n>     Using default value of 1 for all variance components.\n>     See ?breedR.getOption.\n>\n> Error: zmienna is.null(attr(reml.out, \"status\")) nie ma wartości TRUE\n> In addition: Warning message:\n> running command '\"C:/Users/Lenovo/Documents/R/win-library/3.2/breedR/bin/airemlf90\"' had status 123 \n>\n> Below is the session info\n>\n> > sessionInfo()\n> R version 3.2.2 (2015-08-14)\n> Platform: x86_64-w64-mingw32/x64 (64-bit)\n> Running under: Windows 8 x64 (build 9200)\n>\n> locale:\n> [1] LC_COLLATE=Polish_Poland.1250  LC_CTYPE=Polish_Poland.1250   \n> [3] LC_MONETARY=Polish_Poland.1250 LC_NUMERIC=C                  \n> [5] LC_TIME=Polish_Poland.1250    \n>\n> attached base packages:\n> [1] stats     graphics  grDevices utils     datasets  methods   base     \n>\n> other attached packages:\n> [1] ggplot2_1.0.1  breedR_0.10-19 sp_1.2-1       Matrix_1.2-2  \n>\n> loaded via a namespace (and not attached):\n>  [1] Rcpp_0.12.2      knitr_1.11       magrittr_1.5     splines_3.2.2   \n>  [5] MASS_7.3-43      munsell_0.4.2    colorspace_1.2-6 pedigreemm_0.3-3\n>  [9] lattice_0.20-33  minqa_1.2.4      stringr_1.0.0    highr_0.5.1     \n> [13] plyr_1.8.3       tools_3.2.2      grid_3.2.2       gtable_0.1.2    \n> [17] nlme_3.1-122     lme4_1.1-10      digest_0.6.8     nloptr_1.0.4    \n> [21] reshape2_1.4.1   stringi_1.0-1    scales_0.3.0     proto_0.3-10 \n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/famuvie/breedR/issues/58>.\n>\n\n"}}