{"action":"created","issue":{"url":"https://api.github.com/repos/EnvironmentOntology/envo/issues/131","labels_url":"https://api.github.com/repos/EnvironmentOntology/envo/issues/131/labels{/name}","comments_url":"https://api.github.com/repos/EnvironmentOntology/envo/issues/131/comments","events_url":"https://api.github.com/repos/EnvironmentOntology/envo/issues/131/events","html_url":"https://github.com/EnvironmentOntology/envo/issues/131","id":64978331,"number":131,"title":"UBERON import artifacts?","user":{"login":"GoogleCodeExporter","id":9614759,"avatar_url":"https://avatars.githubusercontent.com/u/9614759?v=3","gravatar_id":"","url":"https://api.github.com/users/GoogleCodeExporter","html_url":"https://github.com/GoogleCodeExporter","followers_url":"https://api.github.com/users/GoogleCodeExporter/followers","following_url":"https://api.github.com/users/GoogleCodeExporter/following{/other_user}","gists_url":"https://api.github.com/users/GoogleCodeExporter/gists{/gist_id}","starred_url":"https://api.github.com/users/GoogleCodeExporter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/GoogleCodeExporter/subscriptions","organizations_url":"https://api.github.com/users/GoogleCodeExporter/orgs","repos_url":"https://api.github.com/users/GoogleCodeExporter/repos","events_url":"https://api.github.com/users/GoogleCodeExporter/events{/privacy}","received_events_url":"https://api.github.com/users/GoogleCodeExporter/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/EnvironmentOntology/envo/labels/auto-migrated","name":"auto-migrated","color":"ededed"},{"url":"https://api.github.com/repos/EnvironmentOntology/envo/labels/Priority-Medium","name":"Priority-Medium","color":"ededed"},{"url":"https://api.github.com/repos/EnvironmentOntology/envo/labels/Type-Defect","name":"Type-Defect","color":"ededed"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-03-28T19:23:43Z","updated_at":"2015-04-16T23:10:56Z","closed_at":null,"body":"```\n=== 1 ===\nIt seems that the imported classes are 'naked' - i.e. lack defs, synonyms, etc.\n\n=== 2 ===\nSome UBERON classes appear to have an odd hierarchy.\n\nFor example, we have:\n\nanatomical entity environment\n- bone element environment\nbone element environment\n\nProbably an artifact of the equivalence and subclass assertions.\n\nThis looks quite odd in Protege, but is it 'incorrect'?\n\nThere are also cases such as the case with \"anatomical entity environment\" and \n\"skin environment\". These are on the same level, but perhaps the class \nhierarchy should be preserved? Are the environments that are determined by \nmaterial entities to be held in the same class-subclass structure? Open \nquestion...\n\n\n```\n\nOriginal issue reported on code.google.com by `p.buttig...@gmail.com` on 5 Mar 2015 at 8:18"},"comment":{"url":"https://api.github.com/repos/EnvironmentOntology/envo/issues/comments/93859580","html_url":"https://github.com/EnvironmentOntology/envo/issues/131#issuecomment-93859580","issue_url":"https://api.github.com/repos/EnvironmentOntology/envo/issues/131","id":93859580,"user":{"login":"cmungall","id":50745,"avatar_url":"https://avatars.githubusercontent.com/u/50745?v=3","gravatar_id":"","url":"https://api.github.com/users/cmungall","html_url":"https://github.com/cmungall","followers_url":"https://api.github.com/users/cmungall/followers","following_url":"https://api.github.com/users/cmungall/following{/other_user}","gists_url":"https://api.github.com/users/cmungall/gists{/gist_id}","starred_url":"https://api.github.com/users/cmungall/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmungall/subscriptions","organizations_url":"https://api.github.com/users/cmungall/orgs","repos_url":"https://api.github.com/users/cmungall/repos","events_url":"https://api.github.com/users/cmungall/events{/privacy}","received_events_url":"https://api.github.com/users/cmungall/received_events","type":"User","site_admin":false},"created_at":"2015-04-16T23:10:56Z","updated_at":"2015-04-16T23:10:56Z","body":"that particular example isn't problematic, but once you start doing\r\n\r\n'finger skin environment = hand skin environment and part_of some finger`\r\n\r\nYou are doing redundant work and introducing the possibility of sync issues\r\n\r\nFor the imports we generally strip out axioms to minimize the size of import files, both to avoid too much i/o and memory. But the uberon import should always be small, we can reintroduce some axioms"}}