{"action":"created","issue":{"url":"https://api.github.com/repos/biojava/biojava/issues/339","labels_url":"https://api.github.com/repos/biojava/biojava/issues/339/labels{/name}","comments_url":"https://api.github.com/repos/biojava/biojava/issues/339/comments","events_url":"https://api.github.com/repos/biojava/biojava/issues/339/events","html_url":"https://github.com/biojava/biojava/issues/339","id":112575127,"number":339,"title":"PDB files: error parsing the journal (maybe)","user":{"login":"julie-sullivan","id":1663057,"avatar_url":"https://avatars.githubusercontent.com/u/1663057?v=3","gravatar_id":"","url":"https://api.github.com/users/julie-sullivan","html_url":"https://github.com/julie-sullivan","followers_url":"https://api.github.com/users/julie-sullivan/followers","following_url":"https://api.github.com/users/julie-sullivan/following{/other_user}","gists_url":"https://api.github.com/users/julie-sullivan/gists{/gist_id}","starred_url":"https://api.github.com/users/julie-sullivan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/julie-sullivan/subscriptions","organizations_url":"https://api.github.com/users/julie-sullivan/orgs","repos_url":"https://api.github.com/users/julie-sullivan/repos","events_url":"https://api.github.com/users/julie-sullivan/events{/privacy}","received_events_url":"https://api.github.com/users/julie-sullivan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":8,"created_at":"2015-10-21T12:19:28Z","updated_at":"2015-10-22T16:46:39Z","closed_at":null,"body":"`1crm.pdb`\r\n\r\n```\r\n[integrate] file name 1crm.pdb\r\n[integrate] null\r\n[integrate] java.lang.NumberFormatException: For input string: \"TION\"\r\n[integrate] \tat java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)\r\n[integrate] \tat java.lang.Integer.parseInt(Integer.java:492)\r\n[integrate] \tat java.lang.Integer.valueOf(Integer.java:582)\r\n[integrate] \tat org.biojava.bio.structure.io.PDBFileParser$JournalParser.<init>(PDBFileParser.java:2501)\r\n[integrate] \tat org.biojava.bio.structure.io.PDBFileParser.buildjournalArticle(PDBFileParser.java:2446)\r\n[integrate] \tat org.biojava.bio.structure.io.PDBFileParser.triggerEndFileChecks(PDBFileParser.java:2193)\r\n[integrate] \tat org.biojava.bio.structure.io.PDBFileParser.parsePDBFile(PDBFileParser.java:2107)\r\n[integrate] \tat org.biojava.bio.structure.io.PDBFileParser.parsePDBFile(PDBFileParser.java:1963)\r\n[integrate] \tat org.biojava.bio.structure.io.PDBFileReader.getStructure(PDBFileReader.java:486)\r\n[integrate] \tat org.intermine.bio.dataconversion.PdbConverter.processPDBFile(PdbConverter.java:129)\r\n[integrate] \tat org.intermine.bio.dataconversion.PdbConverter.process(PdbConverter.java:104)\r\n\r\n```\r\n\r\nWhich has this text:\r\n\r\n```\r\nJRNL        AUTH   K.K.KANNAN                                                   \r\nJRNL        TITL   STRUCTURE AND FUNCTION OF CARBONIC ANHYDRASES                \r\nJRNL        EDIT   R.SRINIVASAN                                                 \r\nJRNL        REF    BIOMOLECULAR STRUCTURE,       V.   1   165 1981              \r\nJRNL        REF  2 CONFORMATION, FUNCTION AND                                   \r\nJRNL        REF  3 EVOLUTION                                                    \r\nJRNL        PUBL   PERGAMON PRESS, OXFORD                                       \r\nJRNL        REFN  \r\n```\r\n\r\n1. I was using `biojava3-structure-3.0.7.jar` this morning but I also tried `biojava-structure-4.1.0.jar`.\r\n2. I downloaded the PDB files from pdb.org"},"comment":{"url":"https://api.github.com/repos/biojava/biojava/issues/comments/150285305","html_url":"https://github.com/biojava/biojava/issues/339#issuecomment-150285305","issue_url":"https://api.github.com/repos/biojava/biojava/issues/339","id":150285305,"user":{"login":"julie-sullivan","id":1663057,"avatar_url":"https://avatars.githubusercontent.com/u/1663057?v=3","gravatar_id":"","url":"https://api.github.com/users/julie-sullivan","html_url":"https://github.com/julie-sullivan","followers_url":"https://api.github.com/users/julie-sullivan/followers","following_url":"https://api.github.com/users/julie-sullivan/following{/other_user}","gists_url":"https://api.github.com/users/julie-sullivan/gists{/gist_id}","starred_url":"https://api.github.com/users/julie-sullivan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/julie-sullivan/subscriptions","organizations_url":"https://api.github.com/users/julie-sullivan/orgs","repos_url":"https://api.github.com/users/julie-sullivan/repos","events_url":"https://api.github.com/users/julie-sullivan/events{/privacy}","received_events_url":"https://api.github.com/users/julie-sullivan/received_events","type":"User","site_admin":false},"created_at":"2015-10-22T16:46:39Z","updated_at":"2015-10-22T16:46:39Z","body":"I tried redownloading those files from PDB but I still get the error."}}