{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/server/issues/362","labels_url":"https://api.github.com/repos/ga4gh/server/issues/362/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/server/issues/362/comments","events_url":"https://api.github.com/repos/ga4gh/server/issues/362/events","html_url":"https://github.com/ga4gh/server/issues/362","id":69360084,"number":362,"title":"Add support for sequence annotations","user":{"login":"diekhans","id":110053,"avatar_url":"https://avatars.githubusercontent.com/u/110053?v=3","gravatar_id":"","url":"https://api.github.com/users/diekhans","html_url":"https://github.com/diekhans","followers_url":"https://api.github.com/users/diekhans/followers","following_url":"https://api.github.com/users/diekhans/following{/other_user}","gists_url":"https://api.github.com/users/diekhans/gists{/gist_id}","starred_url":"https://api.github.com/users/diekhans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/diekhans/subscriptions","organizations_url":"https://api.github.com/users/diekhans/orgs","repos_url":"https://api.github.com/users/diekhans/repos","events_url":"https://api.github.com/users/diekhans/events{/privacy}","received_events_url":"https://api.github.com/users/diekhans/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"diekhans","id":110053,"avatar_url":"https://avatars.githubusercontent.com/u/110053?v=3","gravatar_id":"","url":"https://api.github.com/users/diekhans","html_url":"https://github.com/diekhans","followers_url":"https://api.github.com/users/diekhans/followers","following_url":"https://api.github.com/users/diekhans/following{/other_user}","gists_url":"https://api.github.com/users/diekhans/gists{/gist_id}","starred_url":"https://api.github.com/users/diekhans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/diekhans/subscriptions","organizations_url":"https://api.github.com/users/diekhans/orgs","repos_url":"https://api.github.com/users/diekhans/repos","events_url":"https://api.github.com/users/diekhans/events{/privacy}","received_events_url":"https://api.github.com/users/diekhans/received_events","type":"User","site_admin":false},"milestone":null,"comments":36,"created_at":"2015-04-18T23:27:48Z","updated_at":"2015-04-27T16:28:28Z","closed_at":null,"body":"We would like to request prioritizing support for the sequence annotation API.  The variant API plus the sequence annotation API will enable us to demonstrate the usefulness of the GA4GH APIs in the BRCA challenge.  We would like to be able to report on this at the Paris meeting.\r\n\r\nThe sequence annotations methods will probably need revamped."},"comment":{"url":"https://api.github.com/repos/ga4gh/server/issues/comments/96731734","html_url":"https://github.com/ga4gh/server/issues/362#issuecomment-96731734","issue_url":"https://api.github.com/repos/ga4gh/server/issues/362","id":96731734,"user":{"login":"dcolligan","id":7422120,"avatar_url":"https://avatars.githubusercontent.com/u/7422120?v=3","gravatar_id":"","url":"https://api.github.com/users/dcolligan","html_url":"https://github.com/dcolligan","followers_url":"https://api.github.com/users/dcolligan/followers","following_url":"https://api.github.com/users/dcolligan/following{/other_user}","gists_url":"https://api.github.com/users/dcolligan/gists{/gist_id}","starred_url":"https://api.github.com/users/dcolligan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dcolligan/subscriptions","organizations_url":"https://api.github.com/users/dcolligan/orgs","repos_url":"https://api.github.com/users/dcolligan/repos","events_url":"https://api.github.com/users/dcolligan/events{/privacy}","received_events_url":"https://api.github.com/users/dcolligan/received_events","type":"User","site_admin":false},"created_at":"2015-04-27T16:28:28Z","updated_at":"2015-04-27T16:28:28Z","body":"@jeromekelleher  Mark wanted to create a branch to develop the annotations feature in.  To do this, we needed to base it off of a schemas commit that included the annotation schemas.  I figured we would just use the latest commit in the schemas repository and pushed a branch, schemas/annotations.  Trying to incorporate those schemas into the server code (via `process_schemas.py`), I found a number of bugs.  Others in this thread suggested that I file PRs against the schemas repo to fix those bugs, which I have done.  I have done some work in server/annotations and Mark will apparently be pushing some code in that branch soon.  Currently, the server/annotations branch can create a `_protocol_definitions.py` file successfully, but a lot of tests are failing, and I'm not sure it's worth fixing those tests right now, given the predicted churn in the schemas branch because of iterating on the annotations schemas (but we will need to do that before this branch gets merged into server/develop, of course).  That's where we stand."}}