{"push_id":889722792,"size":1,"distinct_size":1,"ref":"refs/heads/mumfix","head":"9768bad323c7edc9f3c2f83e77884bd2054e0dce","before":"28bf5b8b0de780599394425dba1cb0af3f3750d0","commits":[{"sha":"9768bad323c7edc9f3c2f83e77884bd2054e0dce","author":{"email":"201de800c9f3a6b33181c8b0dcb25cd521a2182b@outlook.com","name":"Nigel Delaney"},"message":"Cleanup the MUMmerAligner Class\n\nThe MUMmer aligner exposed a PairWiseAlgorithm to be used to stitching\ntogether of different seeds. There were however a number of constraints\nthat this algorithm must obey but which were not controlled for here.\nIn particular, the algorithm must be a global aligner that returns only\none alignment per sequence pair, but this was not enforced.  As we only\nhave the NeedleManWunsch aligner that fits the global bill here, I\nenforced that this class must use this aligner for stitching together\nseeds.  This is a breaking API change, but if anyone was using the old\nway their code would silently be giving bad results, so it is an\nappropriate change.\n\nThis change also added comments for the aligner.","distinct":true,"url":"https://api.github.com/repos/dotnetbio/bio/commits/9768bad323c7edc9f3c2f83e77884bd2054e0dce"}]}