{"action":"created","issue":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/132","labels_url":"https://api.github.com/repos/GMOD/Apollo/issues/132/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/Apollo/issues/132/comments","events_url":"https://api.github.com/repos/GMOD/Apollo/issues/132/events","html_url":"https://github.com/GMOD/Apollo/issues/132","id":53420786,"number":132,"title":"Link-outs for features not working","user":{"login":"childers","id":421248,"avatar_url":"https://avatars.githubusercontent.com/u/421248?v=3","gravatar_id":"","url":"https://api.github.com/users/childers","html_url":"https://github.com/childers","followers_url":"https://api.github.com/users/childers/followers","following_url":"https://api.github.com/users/childers/following{/other_user}","gists_url":"https://api.github.com/users/childers/gists{/gist_id}","starred_url":"https://api.github.com/users/childers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/childers/subscriptions","organizations_url":"https://api.github.com/users/childers/orgs","repos_url":"https://api.github.com/users/childers/repos","events_url":"https://api.github.com/users/childers/events{/privacy}","received_events_url":"https://api.github.com/users/childers/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"cmdcolin","id":6511937,"avatar_url":"https://avatars.githubusercontent.com/u/6511937?v=3","gravatar_id":"","url":"https://api.github.com/users/cmdcolin","html_url":"https://github.com/cmdcolin","followers_url":"https://api.github.com/users/cmdcolin/followers","following_url":"https://api.github.com/users/cmdcolin/following{/other_user}","gists_url":"https://api.github.com/users/cmdcolin/gists{/gist_id}","starred_url":"https://api.github.com/users/cmdcolin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmdcolin/subscriptions","organizations_url":"https://api.github.com/users/cmdcolin/orgs","repos_url":"https://api.github.com/users/cmdcolin/repos","events_url":"https://api.github.com/users/cmdcolin/events{/privacy}","received_events_url":"https://api.github.com/users/cmdcolin/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/GMOD/Apollo/milestones/6","labels_url":"https://api.github.com/repos/GMOD/Apollo/milestones/6/labels","id":906037,"number":6,"title":"1.0.4","description":"","creator":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"open_issues":9,"closed_issues":1,"state":"open","created_at":"2014-12-16T19:17:26Z","updated_at":"2015-01-05T17:41:18Z","due_on":"2015-01-31T08:00:00Z","closed_at":null},"comments":1,"created_at":"2015-01-05T17:29:21Z","updated_at":"2015-01-05T17:41:44Z","closed_at":null,"body":"One of our project coordinators generated and configured tracks for their browser using the linkTemplate option to handle linking out to their external resources. See (https://github.com/GMOD/jbrowse/issues/120) for more information.  This worked for them when it was a JBrowse-only instance, but not once we migrated their data and configuration to a Web Apollo instance.\r\n\r\nThe left click behavior needs to be overwritten to allow the Web Apollo click to select functionality for features. While necessary, this behavior does not seem to be documented, and persists when a user is not logged in for annotation.\r\n\r\nThe only workaround I see is to adjust trackList.json so the links out are part of a new right-click menu option. In the future, would be possible to re-engineer the linkTemplate tag to auto-generate a generic \"link out\" right click menu option? Or should linkTemplate be considered deprecated in Web Apollo?\r\n\r\nI could not find a section in the manuals that would hold these types of caveats.  Is this something we could add ( a section for known issues between JBrowse and Web Apollo)?"},"comment":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/comments/68744846","html_url":"https://github.com/GMOD/Apollo/issues/132#issuecomment-68744846","issue_url":"https://api.github.com/repos/GMOD/Apollo/issues/132","id":68744846,"user":{"login":"nathandunn","id":751274,"avatar_url":"https://avatars.githubusercontent.com/u/751274?v=3","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"created_at":"2015-01-05T17:41:44Z","updated_at":"2015-01-05T17:41:44Z","body":"@cmdcolin   Colin, is this something you know about directly?  If not, I'll take a look (just assign it back to me).  "}}