{"action":"created","issue":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/177","labels_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/177/labels{/name}","comments_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/177/comments","events_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/177/events","html_url":"https://github.com/PacificBiosciences/FALCON/issues/177","id":103377401,"number":177,"title":"Script generator location","user":{"login":"outpaddling","id":11299711,"avatar_url":"https://avatars.githubusercontent.com/u/11299711?v=3","gravatar_id":"","url":"https://api.github.com/users/outpaddling","html_url":"https://github.com/outpaddling","followers_url":"https://api.github.com/users/outpaddling/followers","following_url":"https://api.github.com/users/outpaddling/following{/other_user}","gists_url":"https://api.github.com/users/outpaddling/gists{/gist_id}","starred_url":"https://api.github.com/users/outpaddling/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/outpaddling/subscriptions","organizations_url":"https://api.github.com/users/outpaddling/orgs","repos_url":"https://api.github.com/users/outpaddling/repos","events_url":"https://api.github.com/users/outpaddling/events{/privacy}","received_events_url":"https://api.github.com/users/outpaddling/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-08-26T22:13:43Z","updated_at":"2015-08-28T01:28:42Z","closed_at":null,"body":"\r\nWhere are scripts such as 0-rawreads/prepare_rdb.sh generated?\r\n\r\nI'm trying to run with job_type = SLURM and SLURM is rejecting the scripts because they are missing a shebang line.\r\n\r\nIf you can point me to the right place, I'll patch it to include a portable shebang line.\r\n\r\nThanks,\r\n\r\n    Jason\r\n"},"comment":{"url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/comments/135599389","html_url":"https://github.com/PacificBiosciences/FALCON/issues/177#issuecomment-135599389","issue_url":"https://api.github.com/repos/PacificBiosciences/FALCON/issues/177","id":135599389,"user":{"login":"pb-cdunn","id":12086299,"avatar_url":"https://avatars.githubusercontent.com/u/12086299?v=3","gravatar_id":"","url":"https://api.github.com/users/pb-cdunn","html_url":"https://github.com/pb-cdunn","followers_url":"https://api.github.com/users/pb-cdunn/followers","following_url":"https://api.github.com/users/pb-cdunn/following{/other_user}","gists_url":"https://api.github.com/users/pb-cdunn/gists{/gist_id}","starred_url":"https://api.github.com/users/pb-cdunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pb-cdunn/subscriptions","organizations_url":"https://api.github.com/users/pb-cdunn/orgs","repos_url":"https://api.github.com/users/pb-cdunn/repos","events_url":"https://api.github.com/users/pb-cdunn/events{/privacy}","received_events_url":"https://api.github.com/users/pb-cdunn/received_events","type":"User","site_admin":false},"created_at":"2015-08-28T01:28:42Z","updated_at":"2015-08-28T01:28:42Z","body":"I don't think we have any shebang lines. What's wrong with `bash script.sh`?\r\n\r\nI don't think we have any limit on local threads in pypeFLOW. If you have a problem locally, you probably need distributed jobs. The sub-scripts, however, provide `--n_core=N` to limit the number of threads."}}