{"action":"created","issue":{"url":"https://api.github.com/repos/WormBase/website/issues/3648","labels_url":"https://api.github.com/repos/WormBase/website/issues/3648/labels{/name}","comments_url":"https://api.github.com/repos/WormBase/website/issues/3648/comments","events_url":"https://api.github.com/repos/WormBase/website/issues/3648/events","html_url":"https://github.com/WormBase/website/issues/3648","id":59801908,"number":3648,"title":"Tier III Gbrowse links to WormBase","user":{"login":"epaule","id":20523,"avatar_url":"https://avatars.githubusercontent.com/u/20523?v=3","gravatar_id":"","url":"https://api.github.com/users/epaule","html_url":"https://github.com/epaule","followers_url":"https://api.github.com/users/epaule/followers","following_url":"https://api.github.com/users/epaule/following{/other_user}","gists_url":"https://api.github.com/users/epaule/gists{/gist_id}","starred_url":"https://api.github.com/users/epaule/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/epaule/subscriptions","organizations_url":"https://api.github.com/users/epaule/orgs","repos_url":"https://api.github.com/users/epaule/repos","events_url":"https://api.github.com/users/epaule/events{/privacy}","received_events_url":"https://api.github.com/users/epaule/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/WormBase/website/labels/feature%20request","name":"feature request","color":"02d7e1"},{"url":"https://api.github.com/repos/WormBase/website/labels/gbrowse","name":"gbrowse","color":"d7e102"}],"state":"open","locked":false,"assignee":{"login":"scottcain","id":274751,"avatar_url":"https://avatars.githubusercontent.com/u/274751?v=3","gravatar_id":"","url":"https://api.github.com/users/scottcain","html_url":"https://github.com/scottcain","followers_url":"https://api.github.com/users/scottcain/followers","following_url":"https://api.github.com/users/scottcain/following{/other_user}","gists_url":"https://api.github.com/users/scottcain/gists{/gist_id}","starred_url":"https://api.github.com/users/scottcain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scottcain/subscriptions","organizations_url":"https://api.github.com/users/scottcain/orgs","repos_url":"https://api.github.com/users/scottcain/repos","events_url":"https://api.github.com/users/scottcain/events{/privacy}","received_events_url":"https://api.github.com/users/scottcain/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/WormBase/website/milestones/23","html_url":"https://github.com/WormBase/website/milestones/WS248","labels_url":"https://api.github.com/repos/WormBase/website/milestones/23/labels","id":1008324,"number":23,"title":"WS248","description":"","creator":{"login":"tharris","id":74888,"avatar_url":"https://avatars.githubusercontent.com/u/74888?v=3","gravatar_id":"","url":"https://api.github.com/users/tharris","html_url":"https://github.com/tharris","followers_url":"https://api.github.com/users/tharris/followers","following_url":"https://api.github.com/users/tharris/following{/other_user}","gists_url":"https://api.github.com/users/tharris/gists{/gist_id}","starred_url":"https://api.github.com/users/tharris/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tharris/subscriptions","organizations_url":"https://api.github.com/users/tharris/orgs","repos_url":"https://api.github.com/users/tharris/repos","events_url":"https://api.github.com/users/tharris/events{/privacy}","received_events_url":"https://api.github.com/users/tharris/received_events","type":"User","site_admin":false},"open_issues":24,"closed_issues":9,"state":"open","created_at":"2015-03-05T22:04:38Z","updated_at":"2015-04-29T15:43:47Z","due_on":"2015-05-28T06:00:00Z","closed_at":null},"comments":5,"created_at":"2015-03-04T14:08:21Z","updated_at":"2015-04-30T14:08:58Z","closed_at":null,"body":"Currently the Tier III GBrowse links to a non-existing transcript page.\r\nSince WS246 they should have proper gene pages:\r\nas example http://www.wormbase.org/tools/genome/gbrowse/l_loa_PRJNA60051/?name=EFO28444.1 \r\nthe id is EFO28444.1\r\nresults in: http://www.wormbase.org/search/transcript/EFO28444.1?redirect=1 (no hit)\r\nbut http://www.wormbase.org/search/gene/EFO28444.1 would be a lot better (1 hit)"},"comment":{"url":"https://api.github.com/repos/WormBase/website/issues/comments/97809760","html_url":"https://github.com/WormBase/website/issues/3648#issuecomment-97809760","issue_url":"https://api.github.com/repos/WormBase/website/issues/3648","id":97809760,"user":{"login":"scottcain","id":274751,"avatar_url":"https://avatars.githubusercontent.com/u/274751?v=3","gravatar_id":"","url":"https://api.github.com/users/scottcain","html_url":"https://github.com/scottcain","followers_url":"https://api.github.com/users/scottcain/followers","following_url":"https://api.github.com/users/scottcain/following{/other_user}","gists_url":"https://api.github.com/users/scottcain/gists{/gist_id}","starred_url":"https://api.github.com/users/scottcain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scottcain/subscriptions","organizations_url":"https://api.github.com/users/scottcain/orgs","repos_url":"https://api.github.com/users/scottcain/repos","events_url":"https://api.github.com/users/scottcain/events{/privacy}","received_events_url":"https://api.github.com/users/scottcain/received_events","type":"User","site_admin":false},"created_at":"2015-04-30T14:08:58Z","updated_at":"2015-04-30T14:08:58Z","body":"As a test, I changed the link callback for both L. loa and C. elegans on staging to a much simpler:\r\n```perl\r\nlink = sub { my $f = shift;\r\n my $transcript = $f->name;\r\n return if $f->type eq 'ncRNA:RNAz';\r\n return \"/get?name=$transcript;class=Gene\";\r\n }\r\n```\r\nand it works the same in both cases, and works the way the C. elegans link did before I did anything: linking to a search result page that then links to the gene page. I'm not a huge fan of this behavior, since it seems like it could just go directly to the gene page, but there is probably something I'm missing that makes this hard.\r\n\r\nSince it works for both L.loa and C.elegans, I suspect it will work in every case. Unless @tharris has a reason he doesn't want me to do that, that's what I'll do later today (that is, make this change in all 29 configs and test on a few genes for each).\r\n"}}