{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/52","labels_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/52/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/52/comments","events_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/52/events","html_url":"https://github.com/geneontology/annotation_extensions/issues/52","id":103737957,"number":52,"title":"Possible protein2GO plugin to show folding.","user":{"login":"dosumis","id":112839,"avatar_url":"https://avatars.githubusercontent.com/u/112839?v=3","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-08-28T15:19:26Z","updated_at":"2015-08-28T18:38:41Z","closed_at":null,"body":"Retrieving folding inference from annotation extension via Aber-OWL web service query\r\n\r\nAnnotation:\r\n'action potential' occurs_in(motor neuron)\r\n\r\nQuery => result:\r\nFolds under 'neuronal action potential'\r\n\r\n\r\nQuery by names\r\nhttp://aber-owl.net/service/api/runQuery.groovy?type=superclass&query=%27action%20potential%27%20and%20%27occurs%20in%27%20some%20%27motor%20neuron%27&labels=true&direct=true\r\n\r\n(readable: http://aber-owl.net/service/api/runQuery.groovy?type=superclass&query='action potential' and 'occurs in' some 'motor neuron'&labels=true&direct=true )\r\n\r\n\r\nQuery by URIs (safer):\r\n\r\nhttp://aber-owl.net/service/api/runQuery.groovy?type=superclass&query=%3Chttp://purl.obolibrary.org/obo/GO_0001508%3E%20and%20%3Chttp://purl.obolibrary.org/obo/BFO_0000066%3E%20some%20%3Chttp://purl.obolibrary.org/obo/CL_0000100%3E&direct=true\r\n\r\n(readable http://aber-owl.net/service/api/runQuery.groovy?type=superclass&query=<http://purl.obolibrary.org/obo/GO_0001508> and <http://purl.obolibrary.org/obo/BFO_0000066> some <http://purl.obolibrary.org/obo/CL_0000100>&direct=true )\r\n\r\n=> JSON output with list of results\r\n\r\n~~~~.js\r\n\r\n{\"result\":[\r\n{\"owlClass\":\"http://purl.obolibrary.org/obo/GO_0001508>\",\r\n \"classURI\":\"http://purl.obolibrary.org/obo/GO_0001508\",\r\n \"ontologyURI\":\"MP\",\"remainder\":\"GO_0001508\",\r\n\"label\":\"action potential\",\r\n\"definition\":null,\r\n\"deprecated\":false},\r\n{\"owlClass\": <http://purl.obolibrary.org/obo/GO_0019228>\",\r\n\"classURI\":\"http://purl.obolibrary.org/obo/GO_0019228\",\r\n\"ontologyURI\":\"go-plus\",\r\n\"remainder\":\"GO_0019228\",\r\n\"label\":\"neuronal action potential\",\r\n\"definition\":\"An action potential that occurs in a neuron.\",\r\n\"deprecated\":false}],\r\n\"time\":722}\r\n\r\n\r\n~~~~~\r\n\r\nTo be safe, only take results from \"ontologyURI\":\"go-plus\"\r\n\r\nDoc http://aber-owl.net/help\r\n\r\nCC @rachhuntley @RLovering @mcourtot @tonysawfordebi "},"comment":{"url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/comments/135856445","html_url":"https://github.com/geneontology/annotation_extensions/issues/52#issuecomment-135856445","issue_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/52","id":135856445,"user":{"login":"cmungall","id":50745,"avatar_url":"https://avatars.githubusercontent.com/u/50745?v=3","gravatar_id":"","url":"https://api.github.com/users/cmungall","html_url":"https://github.com/cmungall","followers_url":"https://api.github.com/users/cmungall/followers","following_url":"https://api.github.com/users/cmungall/following{/other_user}","gists_url":"https://api.github.com/users/cmungall/gists{/gist_id}","starred_url":"https://api.github.com/users/cmungall/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmungall/subscriptions","organizations_url":"https://api.github.com/users/cmungall/orgs","repos_url":"https://api.github.com/users/cmungall/repos","events_url":"https://api.github.com/users/cmungall/events{/privacy}","received_events_url":"https://api.github.com/users/cmungall/received_events","type":"User","site_admin":false},"created_at":"2015-08-28T18:38:41Z","updated_at":"2015-08-28T18:38:41Z","body":"Hmm, I would expect this to yield owl:Nothing (and hence everything)\r\n\r\nhttp://aber-owl.net/service/api/runQuery.groovy?type=superclass&query=%27extracellular%20space%27%20and%20%27occurs%20in%27%20some%20nucleus&labels=true&direct=true\r\n\r\ncompare\r\n<img width=\"1178\" alt=\"screen shot 2015-08-28 at 11 36 21 am\" src=\"https://cloud.githubusercontent.com/assets/50745/9554217/37fb0632-4d79-11e5-9f79-ed3701be9f7d.png\">\r\n\r\n\r\n"}}