{"action":"created","issue":{"url":"https://api.github.com/repos/CompEvol/beast2/issues/298","labels_url":"https://api.github.com/repos/CompEvol/beast2/issues/298/labels{/name}","comments_url":"https://api.github.com/repos/CompEvol/beast2/issues/298/comments","events_url":"https://api.github.com/repos/CompEvol/beast2/issues/298/events","html_url":"https://github.com/CompEvol/beast2/issues/298","id":61601452,"number":298,"title":"How do I build and run beauti?","user":{"login":"Anaphory","id":1579723,"avatar_url":"https://avatars.githubusercontent.com/u/1579723?v=3","gravatar_id":"","url":"https://api.github.com/users/Anaphory","html_url":"https://github.com/Anaphory","followers_url":"https://api.github.com/users/Anaphory/followers","following_url":"https://api.github.com/users/Anaphory/following{/other_user}","gists_url":"https://api.github.com/users/Anaphory/gists{/gist_id}","starred_url":"https://api.github.com/users/Anaphory/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Anaphory/subscriptions","organizations_url":"https://api.github.com/users/Anaphory/orgs","repos_url":"https://api.github.com/users/Anaphory/repos","events_url":"https://api.github.com/users/Anaphory/events{/privacy}","received_events_url":"https://api.github.com/users/Anaphory/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-03-14T13:17:34Z","updated_at":"2015-03-15T09:10:06Z","closed_at":null,"body":"I have just cloned the current repository, and tried to build everything from source.\r\n`ant` runs without complications, but does not build `beauti.jar`, and the target that looks like it is supposed to do that does not contain any reference to `beauti.jar`. How do I build and run beauti?"},"comment":{"url":"https://api.github.com/repos/CompEvol/beast2/issues/comments/80927881","html_url":"https://github.com/CompEvol/beast2/issues/298#issuecomment-80927881","issue_url":"https://api.github.com/repos/CompEvol/beast2/issues/298","id":80927881,"user":{"login":"Anaphory","id":1579723,"avatar_url":"https://avatars.githubusercontent.com/u/1579723?v=3","gravatar_id":"","url":"https://api.github.com/users/Anaphory","html_url":"https://github.com/Anaphory","followers_url":"https://api.github.com/users/Anaphory/followers","following_url":"https://api.github.com/users/Anaphory/following{/other_user}","gists_url":"https://api.github.com/users/Anaphory/gists{/gist_id}","starred_url":"https://api.github.com/users/Anaphory/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Anaphory/subscriptions","organizations_url":"https://api.github.com/users/Anaphory/orgs","repos_url":"https://api.github.com/users/Anaphory/repos","events_url":"https://api.github.com/users/Anaphory/events{/privacy}","received_events_url":"https://api.github.com/users/Anaphory/received_events","type":"User","site_admin":false},"created_at":"2015-03-15T09:10:06Z","updated_at":"2015-03-15T09:10:06Z","body":"Cool, that works. Thank you. However, I had looked inside `release/Linux/bin/beauti`, and it tries to find `beast.app.beauti.BeautiLauncher` in `launcher.jar`, which does not work.\r\n\r\n    jardir = /home/gereon/grammarevolution/beast2/build/dist/launcher.jar\r\n    Checking out /home/gereon/grammarevolution/beast2/build/dist/lib\r\n    Checking out /home/gereon/grammarevolution/beast2/build/lib\r\n    Checking out /home/gereon/grammarevolution/beast2/lib\r\n    Loaded URL file:/home/gereon/grammarevolution/beast2/lib/beast.jar\r\n    Exception in thread \"main\" java.lang.ClassNotFoundException: beast.evolution.alignment.Alignment\r\n        at java.net.URLClassLoader$1.run(URLClassLoader.java:372)\r\n        at java.net.URLClassLoader$1.run(URLClassLoader.java:361)\r\n        at java.security.AccessController.doPrivileged(Native Method)\r\n        at java.net.URLClassLoader.findClass(URLClassLoader.java:360)\r\n        at java.lang.ClassLoader.loadClass(ClassLoader.java:424)\r\n        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)\r\n        at java.lang.ClassLoader.loadClass(ClassLoader.java:357)\r\n        at java.lang.Class.forName0(Native Method)\r\n        at java.lang.Class.forName(Class.java:260)\r\n        at beast.app.beastapp.BeastLauncher.loadBEASTJars(Unknown Source)\r\n        at beast.app.beauti.BeautiLauncher.main(Unknown Source)"}}