{"action":"opened","issue":{"url":"https://api.github.com/repos/armintoepfer/QuasiRecomb/issues/1","labels_url":"https://api.github.com/repos/armintoepfer/QuasiRecomb/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/armintoepfer/QuasiRecomb/issues/1/comments","events_url":"https://api.github.com/repos/armintoepfer/QuasiRecomb/issues/1/events","html_url":"https://github.com/armintoepfer/QuasiRecomb/issues/1","id":59259460,"number":1,"title":"QuasiRecomb crashes on single-CPU machines.","user":{"login":"riccardomurri","id":447228,"avatar_url":"https://avatars.githubusercontent.com/u/447228?v=3","gravatar_id":"","url":"https://api.github.com/users/riccardomurri","html_url":"https://github.com/riccardomurri","followers_url":"https://api.github.com/users/riccardomurri/followers","following_url":"https://api.github.com/users/riccardomurri/following{/other_user}","gists_url":"https://api.github.com/users/riccardomurri/gists{/gist_id}","starred_url":"https://api.github.com/users/riccardomurri/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/riccardomurri/subscriptions","organizations_url":"https://api.github.com/users/riccardomurri/orgs","repos_url":"https://api.github.com/users/riccardomurri/repos","events_url":"https://api.github.com/users/riccardomurri/events{/privacy}","received_events_url":"https://api.github.com/users/riccardomurri/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-02-27T16:33:08Z","updated_at":"2015-02-27T16:33:08Z","closed_at":null,"body":"Hello,\r\n\r\nI have been trying to run QuasiRecomb on a single processor machine\r\nwith no luck.\r\n\r\nThe program starts, completes the parsing phase, and -as soon as\r\n\"computing\" appears on the screen- the following Java exception is\r\nthrown:\r\n\r\n        Exception in thread \"main\" java.lang.reflect.InvocationTargetException\r\n                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r\n                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)\r\n                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)\r\n                at java.lang.reflect.Method.invoke(Method.java:606)\r\n                at com.simontuffs.onejar.Boot.run(Boot.java:340)\r\n                at com.simontuffs.onejar.Boot.main(Boot.java:166)\r\n        Caused by: java.lang.ExceptionInInitializerError\r\n                at ch.ethz.bsse.quasirecomb.utils.Utils.parseBAMSAMPure(Utils.java:323)\r\n                at ch.ethz.bsse.quasirecomb.utils.Utils.parseBAMSAM(Utils.java:399)\r\n                at ch.ethz.bsse.quasirecomb.utils.Utils.parseInput(Utils.java:285)\r\n                at ch.ethz.bsse.quasirecomb.model.Preprocessing.workflow(Preprocessing.java:68)\r\n                at ch.ethz.bsse.quasirecomb.Startup.train(Startup.java:874)\r\n                at ch.ethz.bsse.quasirecomb.Startup.doMain(Startup.java:923)\r\n                at ch.ethz.bsse.quasirecomb.Startup.main(Startup.java:61)\r\n                ... 6 more\r\n        Caused by: java.lang.IllegalArgumentException\r\n                at java.util.concurrent.ArrayBlockingQueue.<init>(ArrayBlockingQueue.java:225)\r\n                at java.util.concurrent.ArrayBlockingQueue.<init>(ArrayBlockingQueue.java:210)\r\n                at ch.ethz.bsse.quasirecomb.informationholder.Threading.<clinit>(Threading.java:36)\r\n                ... 13 more\r\n\r\nI have tried different versions of Java, to no avail.\r\n\r\nThe exact same setup on a multi-core machine works correctly without\r\nany problem.\r\n\r\nIf QuasiRecomb cannot run on a single-core system, it should at least\r\nexit with a sensible error message...\r\n"}}