{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/746","labels_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/746/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/746/comments","events_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/746/events","html_url":"https://github.com/galaxyproject/galaxy/pull/746","id":107189010,"number":746,"title":"Fix issue #745 sort bam-to-sam output","user":{"login":"mvdbeek","id":6804901,"avatar_url":"https://avatars.githubusercontent.com/u/6804901?v=3","gravatar_id":"","url":"https://api.github.com/users/mvdbeek","html_url":"https://github.com/mvdbeek","followers_url":"https://api.github.com/users/mvdbeek/followers","following_url":"https://api.github.com/users/mvdbeek/following{/other_user}","gists_url":"https://api.github.com/users/mvdbeek/gists{/gist_id}","starred_url":"https://api.github.com/users/mvdbeek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvdbeek/subscriptions","organizations_url":"https://api.github.com/users/mvdbeek/orgs","repos_url":"https://api.github.com/users/mvdbeek/repos","events_url":"https://api.github.com/users/mvdbeek/events{/privacy}","received_events_url":"https://api.github.com/users/mvdbeek/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2015-09-18T12:02:59Z","updated_at":"2015-09-18T21:59:35Z","closed_at":"2015-09-18T21:59:35Z","pull_request":{"url":"https://api.github.com/repos/galaxyproject/galaxy/pulls/746","html_url":"https://github.com/galaxyproject/galaxy/pull/746","diff_url":"https://github.com/galaxyproject/galaxy/pull/746.diff","patch_url":"https://github.com/galaxyproject/galaxy/pull/746.patch"},"body":"... and potentially the the sam-bam conversion failure of issue #744 "},"comment":{"url":"https://api.github.com/repos/galaxyproject/galaxy/issues/comments/141579160","html_url":"https://github.com/galaxyproject/galaxy/pull/746#issuecomment-141579160","issue_url":"https://api.github.com/repos/galaxyproject/galaxy/issues/746","id":141579160,"user":{"login":"mvdbeek","id":6804901,"avatar_url":"https://avatars.githubusercontent.com/u/6804901?v=3","gravatar_id":"","url":"https://api.github.com/users/mvdbeek","html_url":"https://github.com/mvdbeek","followers_url":"https://api.github.com/users/mvdbeek/followers","following_url":"https://api.github.com/users/mvdbeek/following{/other_user}","gists_url":"https://api.github.com/users/mvdbeek/gists{/gist_id}","starred_url":"https://api.github.com/users/mvdbeek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvdbeek/subscriptions","organizations_url":"https://api.github.com/users/mvdbeek/orgs","repos_url":"https://api.github.com/users/mvdbeek/repos","events_url":"https://api.github.com/users/mvdbeek/events{/privacy}","received_events_url":"https://api.github.com/users/mvdbeek/received_events","type":"User","site_admin":false},"created_at":"2015-09-18T21:59:35Z","updated_at":"2015-09-18T21:59:35Z","body":"OK, I get it now, there appears to be a problem in generating the index file and/or sorting the bamfile within the bam datatype (see @martenson framework output https://jenkins.galaxyproject.org/job/G-framework/9/testReport/functional.test_toolbox/TestForTool_metadata_bam/test_tool_000000/).\r\nThis PR would just work around that issue instead of fixing it."}}