{"action":"created","issue":{"url":"https://api.github.com/repos/amplab/snap/issues/25","labels_url":"https://api.github.com/repos/amplab/snap/issues/25/labels{/name}","comments_url":"https://api.github.com/repos/amplab/snap/issues/25/comments","events_url":"https://api.github.com/repos/amplab/snap/issues/25/events","html_url":"https://github.com/amplab/snap/issues/25","id":29535214,"number":25,"title":"Why SNAP is not distributed naturally and does not support ADAM format directly?","user":{"login":"alartin","id":1917472,"avatar_url":"https://avatars.githubusercontent.com/u/1917472?v=3","gravatar_id":"","url":"https://api.github.com/users/alartin","html_url":"https://github.com/alartin","followers_url":"https://api.github.com/users/alartin/followers","following_url":"https://api.github.com/users/alartin/following{/other_user}","gists_url":"https://api.github.com/users/alartin/gists{/gist_id}","starred_url":"https://api.github.com/users/alartin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alartin/subscriptions","organizations_url":"https://api.github.com/users/alartin/orgs","repos_url":"https://api.github.com/users/alartin/repos","events_url":"https://api.github.com/users/alartin/events{/privacy}","received_events_url":"https://api.github.com/users/alartin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":7,"created_at":"2014-03-17T03:25:32Z","updated_at":"2015-05-02T18:29:07Z","closed_at":null,"body":"I just wonder why snap does not use mapreduce of hadoop/spark as the mapping engine and why it does not support ADAM directly."},"comment":{"url":"https://api.github.com/repos/amplab/snap/issues/comments/98384404","html_url":"https://github.com/amplab/snap/issues/25#issuecomment-98384404","issue_url":"https://api.github.com/repos/amplab/snap/issues/25","id":98384404,"user":{"login":"gurvindersingh","id":186077,"avatar_url":"https://avatars.githubusercontent.com/u/186077?v=3","gravatar_id":"","url":"https://api.github.com/users/gurvindersingh","html_url":"https://github.com/gurvindersingh","followers_url":"https://api.github.com/users/gurvindersingh/followers","following_url":"https://api.github.com/users/gurvindersingh/following{/other_user}","gists_url":"https://api.github.com/users/gurvindersingh/gists{/gist_id}","starred_url":"https://api.github.com/users/gurvindersingh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gurvindersingh/subscriptions","organizations_url":"https://api.github.com/users/gurvindersingh/orgs","repos_url":"https://api.github.com/users/gurvindersingh/repos","events_url":"https://api.github.com/users/gurvindersingh/events{/privacy}","received_events_url":"https://api.github.com/users/gurvindersingh/received_events","type":"User","site_admin":false},"created_at":"2015-05-02T18:29:07Z","updated_at":"2015-05-02T18:29:07Z","body":"Ok thanks Bill. \r\n\r\nI have looked at the ADAM project is seems to be using SNAP in their avocado project to align data. It uses SNAPs stdin and stdout functionality. There is one issue though, it seems that SNAP can not read refernece index from HDFS, so it foces the reference index to be located on all the spark worker nodes, which seems bit of overkill. It would be nice if SNAP can read reference genome index from HDFS. It might be there and I am missing it, can you please let me know status about it.\r\n"}}