{"action":"opened","issue":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/57","labels_url":"https://api.github.com/repos/cjfields/redmine-test/issues/57/labels{/name}","comments_url":"https://api.github.com/repos/cjfields/redmine-test/issues/57/comments","events_url":"https://api.github.com/repos/cjfields/redmine-test/issues/57/events","html_url":"https://github.com/cjfields/redmine-test/issues/57","id":108469984,"number":57,"title":"Use of uninitialized value in length at Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1064.","user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Priority:%20Normal","name":"Priority: Normal","color":"666600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Status:%20New","name":"Status: New","color":"FF6600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Tracker:%20Bug","name":"Tracker: Bug","color":"FF0000"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-09-26T14:25:05Z","updated_at":"2015-09-26T14:25:05Z","closed_at":null,"body":"---\n\n\nAuthor Name: **Dan Bolser** (Dan Bolser)\nOriginal Redmine Issue: 3206, https://redmine.open-bio.org/issues/3206\nOriginal Date: 2011-04-15\nOriginal Assignee: Bioperl Guts\n\n---\n\nI’m loading a simple GFF3 file (attached) that validates correctly here [1] using the following command:\n\n     bp_seqfeature_load.pl --create --dsn my_database:mysql.host.here.ac.uk --user me --pass secret gene_test.gff\n\nIt seems to load fine, and there are no apparent errors. I’ve attached a dump of the database.\n\nWhen I run a simple BioPerl script against the database [2], I see the following error:\n\n    Use of uninitialized value in length at /homes/dbolser/perl5/lib/perl5/Bio/DB/SeqFeature/Store/DBI/mysql.pm line 1064.\n\nI tried to debug this by creating a test script [3], but I don’t see any errors. This could be because my test script is not testing in the same way.\n\nLet me know what other info you need.\n\nDan.\n\n[1] http://modencode.oicr.on.ca/cgi-bin/validate\\_gff3\\_online\n[2] https://gist.github.com/921515\n[3] https://gist.github.com/921519\n\n\n\n\n"}}