{"action":"created","issue":{"url":"https://api.github.com/repos/firedrakeproject/firedrake/issues/617","labels_url":"https://api.github.com/repos/firedrakeproject/firedrake/issues/617/labels{/name}","comments_url":"https://api.github.com/repos/firedrakeproject/firedrake/issues/617/comments","events_url":"https://api.github.com/repos/firedrakeproject/firedrake/issues/617/events","html_url":"https://github.com/firedrakeproject/firedrake/issues/617","id":112850590,"number":617,"title":"Install script hangs during petsc install on clean 15.10 VM","user":{"login":"dorugeber","id":5711063,"avatar_url":"https://avatars.githubusercontent.com/u/5711063?v=3","gravatar_id":"","url":"https://api.github.com/users/dorugeber","html_url":"https://github.com/dorugeber","followers_url":"https://api.github.com/users/dorugeber/followers","following_url":"https://api.github.com/users/dorugeber/following{/other_user}","gists_url":"https://api.github.com/users/dorugeber/gists{/gist_id}","starred_url":"https://api.github.com/users/dorugeber/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dorugeber/subscriptions","organizations_url":"https://api.github.com/users/dorugeber/orgs","repos_url":"https://api.github.com/users/dorugeber/repos","events_url":"https://api.github.com/users/dorugeber/events{/privacy}","received_events_url":"https://api.github.com/users/dorugeber/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-10-22T17:23:14Z","updated_at":"2015-10-23T16:54:36Z","closed_at":null,"body":"Terminal output below, in three sections.\r\n```\r\nandrew@ubuntu:~$ curl -O https://raw.githubusercontent.com/firedrakeproject/firedrake/master/scripts/firedrake-install\r\n  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\r\n                                 Dload  Upload   Total   Spent    Left  Speed\r\n100 19358  100 19358    0     0  43535      0 --:--:-- --:--:-- --:--:-- 43599\r\n```\r\n```\r\nandrew@ubuntu:~$ python firedrake-install\r\napt 1.0.10.2ubuntu1 for amd64 compiled on Oct  5 2015 15:55:05\r\nSupported modules:\r\n*Ver: Standard .deb\r\n*Pkg:  Debian dpkg interface (Priority 30)\r\n Pkg:  Debian APT solver interface (Priority -1000)\r\n S.L: 'deb' Standard Debian binary tree\r\n S.L: 'deb-src' Standard Debian source tree\r\n Idx: Debian Source Index\r\n Idx: Debian Package Index\r\n Idx: Debian Translation Index\r\n Idx: Debian dpkg status file\r\n Idx: EDSP scenario file\r\nPackage: build-essential\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: devel\r\nInstalled-Size: 20\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nVersion: 12.1ubuntu2\r\nDepends: libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11)\r\nDescription: Informational list of build-essential packages\r\n If you do not plan to build Debian packages, you don't need this\r\n package.  Starting with dpkg (>= 1.14.18) this package is required\r\n for building Debian packages.\r\n .\r\n This package contains an informational list of packages which are\r\n considered essential for building Debian packages.  This package also\r\n depends on the packages on that list, to make it easy to have the\r\n build-essential packages installed.\r\n .\r\n If you have this package installed, you only need to install whatever\r\n a package specifies as its build-time dependencies to build the\r\n package.  Conversely, if you are determining what your package needs\r\n to build-depend on, you can always leave out the packages this\r\n package depends on.\r\n .\r\n This package is NOT the definition of what packages are\r\n build-essential; the real definition is in the Debian Policy Manual.\r\n This package contains merely an informational list, which is all\r\n most people need.   However, if this package and the manual disagree,\r\n the manual is correct.\r\nOriginal-Maintainer: Matthias Klose <doko@debian.org>\r\nChecking for presence of package build-essential...installed.\r\ndpkg-query: package 'python-dev' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package python-dev...missing.\r\ndpkg-query: package 'git-core' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package git-core...missing.\r\ndpkg-query: package 'mercurial' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package mercurial...missing.\r\ndpkg-query: package 'python-pip' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package python-pip...missing.\r\ndpkg-query: package 'libopenmpi-dev' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package libopenmpi-dev...missing.\r\ndpkg-query: package 'openmpi-bin' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package openmpi-bin...missing.\r\ndpkg-query: package 'libblas-dev' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package libblas-dev...missing.\r\ndpkg-query: package 'liblapack-dev' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package liblapack-dev...missing.\r\ndpkg-query: package 'gfortran' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package gfortran...missing.\r\ndpkg-query: package 'cmake' is not installed and no information is available\r\nUse dpkg --info (= dpkg-deb --info) to examine archive files,\r\nand dpkg --contents (= dpkg-deb --contents) to list their contents.\r\nChecking for presence of package cmake...missing.\r\nInstalling missing packages: python-dev, git-core, mercurial, python-pip, libopenmpi-dev, openmpi-bin, libblas-dev, liblapack-dev, gfortran, cmake.\r\n[sudo] password for andrew: \r\nReading package lists... Done\r\nBuilding dependency tree       \r\nReading state information... Done\r\nThe following extra packages will be installed:\r\n  autotools-dev cmake-data gfortran-5 git git-man javascript-common\r\n  libblas-common libblas3 libcr0 liberror-perl libexpat1-dev libgfortran-5-dev\r\n  libgfortran3 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev\r\n  libibverbs1 libjs-excanvas libjsoncpp0v5 liblapack3 libltdl-dev libnuma-dev\r\n  libopenmpi1.6 libpython-dev libpython2.7-dev libtool mercurial-common\r\n  ocl-icd-libopencl1 openmpi-common python-colorama python-distlib\r\n  python-ndg-httpsclient python-requests python-setuptools python-urllib3\r\n  python-wheel python2.7-dev\r\nSuggested packages:\r\n  codeblocks eclipse ninja-build gfortran-multilib gfortran-doc\r\n  gfortran-5-multilib gfortran-5-doc libgfortran3-dbg git-daemon-run\r\n  git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-arch\r\n  git-cvs git-mediawiki git-svn apache2 lighttpd httpd blcr-dkms\r\n  libhwloc-contrib-plugins libtool-doc autoconf automaken gcj-jdk qct kdiff3\r\n  kdiff3-qt kompare meld tkcvs mgdiff python-mysqldb python-pygments\r\n  opencl-icd openmpi-checkpoint python-setuptools-doc python-ntlm\r\nRecommended packages:\r\n  python-dev-all\r\nThe following NEW packages will be installed:\r\n  autotools-dev cmake cmake-data gfortran gfortran-5 git git-core git-man\r\n  javascript-common libblas-common libblas-dev libblas3 libcr0 liberror-perl\r\n  libexpat1-dev libgfortran-5-dev libgfortran3 libhwloc-dev libhwloc-plugins\r\n  libhwloc5 libibverbs-dev libibverbs1 libjs-excanvas libjsoncpp0v5\r\n  liblapack-dev liblapack3 libltdl-dev libnuma-dev libopenmpi-dev\r\n  libopenmpi1.6 libpython-dev libpython2.7-dev libtool mercurial\r\n  mercurial-common ocl-icd-libopencl1 openmpi-bin openmpi-common\r\n  python-colorama python-dev python-distlib python-ndg-httpsclient python-pip\r\n  python-requests python-setuptools python-urllib3 python-wheel python2.7-dev\r\n0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.\r\nNeed to get 51.5 MB of archives.\r\nAfter this operation, 156 MB of additional disk space will be used.\r\nDo you want to continue? [Y/n] \r\nGet:1 http://archive.ubuntu.com/ubuntu/ wily/main cmake-data all 3.2.2-2ubuntu3 [1,029 kB]\r\nGet:2 http://archive.ubuntu.com/ubuntu/ wily/main libjsoncpp0v5 amd64 0.10.5-1 [74.2 kB]\r\nGet:3 http://archive.ubuntu.com/ubuntu/ wily/main cmake amd64 3.2.2-2ubuntu3 [2,536 kB]\r\nGet:4 http://archive.ubuntu.com/ubuntu/ wily/universe libhwloc5 amd64 1.11.0-1 [88.7 kB]\r\nGet:5 http://archive.ubuntu.com/ubuntu/ wily/main autotools-dev all 20140911.1 [39.6 kB]\r\nGet:6 http://archive.ubuntu.com/ubuntu/ wily/main libgfortran3 amd64 5.2.1-22ubuntu2 [258 kB]\r\nGet:7 http://archive.ubuntu.com/ubuntu/ wily/main libgfortran-5-dev amd64 5.2.1-22ubuntu2 [289 kB]\r\nGet:8 http://archive.ubuntu.com/ubuntu/ wily/main gfortran-5 amd64 5.2.1-22ubuntu2 [6,305 kB]\r\nGet:9 http://archive.ubuntu.com/ubuntu/ wily/main gfortran amd64 4:5.2.1-3ubuntu1 [1,274 B]\r\nGet:10 http://archive.ubuntu.com/ubuntu/ wily/main liberror-perl all 0.17-1.1 [21.1 kB]\r\nGet:11 http://archive.ubuntu.com/ubuntu/ wily/main git-man all 1:2.5.0-1 [727 kB]\r\nGet:12 http://archive.ubuntu.com/ubuntu/ wily/main git amd64 1:2.5.0-1 [2,951 kB]\r\nGet:13 http://archive.ubuntu.com/ubuntu/ wily/main git-core all 1:2.5.0-1 [1,450 B]\r\nGet:14 http://archive.ubuntu.com/ubuntu/ wily/main javascript-common all 11 [6,066 B]\r\nGet:15 http://archive.ubuntu.com/ubuntu/ wily/main libblas-common amd64 1.2.20110419-10 [3,058 B]\r\nGet:16 http://archive.ubuntu.com/ubuntu/ wily/main libblas3 amd64 1.2.20110419-10 [161 kB]\r\nGet:17 http://archive.ubuntu.com/ubuntu/ wily/main libblas-dev amd64 1.2.20110419-10 [156 kB]\r\nGet:18 http://archive.ubuntu.com/ubuntu/ wily/universe libcr0 amd64 0.8.5-2.2 [18.8 kB]\r\nGet:19 http://archive.ubuntu.com/ubuntu/ wily/main libexpat1-dev amd64 2.1.0-7 [115 kB]\r\nGet:20 http://archive.ubuntu.com/ubuntu/ wily/universe libjs-excanvas all 0.r3-4 [45.2 kB]\r\nGet:21 http://archive.ubuntu.com/ubuntu/ wily/main liblapack3 amd64 3.5.0-4 [1,844 kB]\r\nGet:22 http://archive.ubuntu.com/ubuntu/ wily/main liblapack-dev amd64 3.5.0-4 [1,874 kB]\r\nGet:23 http://archive.ubuntu.com/ubuntu/ wily/main libltdl-dev amd64 2.4.2-1.11 [158 kB]\r\nGet:24 http://archive.ubuntu.com/ubuntu/ wily/main libpython2.7-dev amd64 2.7.10-4ubuntu1 [27.7 MB]\r\nGet:25 http://archive.ubuntu.com/ubuntu/ wily/main libpython-dev amd64 2.7.9-1 [7,836 B]\r\nGet:26 http://archive.ubuntu.com/ubuntu/ wily/main libtool all 2.4.2-1.11 [180 kB]\r\nGet:27 http://archive.ubuntu.com/ubuntu/ wily/universe mercurial-common all 3.4-1ubuntu2 [1,701 kB]\r\nGet:28 http://archive.ubuntu.com/ubuntu/ wily/universe mercurial amd64 3.4-1ubuntu2 [45.0 kB]\r\nGet:29 http://archive.ubuntu.com/ubuntu/ wily/main libibverbs1 amd64 1.1.8-1.1ubuntu1 [24.7 kB]\r\nGet:30 http://archive.ubuntu.com/ubuntu/ wily/universe libopenmpi1.6 amd64 1.6.5-11 [1,432 kB]\r\nGet:31 http://archive.ubuntu.com/ubuntu/ wily/universe openmpi-common all 1.6.5-11 [101 kB]\r\nGet:32 http://archive.ubuntu.com/ubuntu/ wily/universe openmpi-bin amd64 1.6.5-11 [85.0 kB]\r\nGet:33 http://archive.ubuntu.com/ubuntu/ wily/universe python-colorama all 0.3.3-1 [21.4 kB]\r\nGet:34 http://archive.ubuntu.com/ubuntu/ wily/main python2.7-dev amd64 2.7.10-4ubuntu1 [270 kB]\r\nGet:35 http://archive.ubuntu.com/ubuntu/ wily/main python-dev amd64 2.7.9-1 [1,220 B]\r\nGet:36 http://archive.ubuntu.com/ubuntu/ wily/universe python-distlib all 0.2.1-1 [112 kB]\r\nGet:37 http://archive.ubuntu.com/ubuntu/ wily/main python-ndg-httpsclient all 0.4.0-1 [24.9 kB]\r\nGet:38 http://archive.ubuntu.com/ubuntu/ wily/main python-urllib3 all 1.11-1 [56.2 kB]\r\nGet:39 http://archive.ubuntu.com/ubuntu/ wily/main python-requests all 2.7.0-3 [53.8 kB]\r\nGet:40 http://archive.ubuntu.com/ubuntu/ wily/main python-setuptools all 18.4-1 [171 kB]\r\nGet:41 http://archive.ubuntu.com/ubuntu/ wily/universe python-pip all 1.5.6-7ubuntu1 [99.5 kB]\r\nGet:42 http://archive.ubuntu.com/ubuntu/ wily/universe python-wheel all 0.26.0-1 [46.4 kB]\r\nGet:43 http://archive.ubuntu.com/ubuntu/ wily/main libnuma-dev amd64 2.0.10-1ubuntu6 [31.7 kB]\r\nGet:44 http://archive.ubuntu.com/ubuntu/ wily/universe libhwloc-dev amd64 1.11.0-1 [144 kB]\r\nGet:45 http://archive.ubuntu.com/ubuntu/ wily/main ocl-icd-libopencl1 amd64 2.2.7-2 [29.7 kB]\r\nGet:46 http://archive.ubuntu.com/ubuntu/ wily/universe libhwloc-plugins amd64 1.11.0-1 [12.1 kB]\r\nGet:47 http://archive.ubuntu.com/ubuntu/ wily/main libibverbs-dev amd64 1.1.8-1.1ubuntu1 [77.2 kB]\r\nGet:48 http://archive.ubuntu.com/ubuntu/ wily/universe libopenmpi-dev amd64 1.6.5-11 [378 kB]\r\nFetched 51.5 MB in 13s (3,762 kB/s)                                            \r\nExtracting templates from packages: 100%\r\nSelecting previously unselected package cmake-data.\r\n(Reading database ... 175938 files and directories currently installed.)\r\nPreparing to unpack .../cmake-data_3.2.2-2ubuntu3_all.deb ...\r\nUnpacking cmake-data (3.2.2-2ubuntu3) ...\r\nSelecting previously unselected package libjsoncpp0v5:amd64.\r\nPreparing to unpack .../libjsoncpp0v5_0.10.5-1_amd64.deb ...\r\nUnpacking libjsoncpp0v5:amd64 (0.10.5-1) ...\r\nSelecting previously unselected package cmake.\r\nPreparing to unpack .../cmake_3.2.2-2ubuntu3_amd64.deb ...\r\nUnpacking cmake (3.2.2-2ubuntu3) ...\r\nSelecting previously unselected package libhwloc5:amd64.\r\nPreparing to unpack .../libhwloc5_1.11.0-1_amd64.deb ...\r\nUnpacking libhwloc5:amd64 (1.11.0-1) ...\r\nSelecting previously unselected package autotools-dev.\r\nPreparing to unpack .../autotools-dev_20140911.1_all.deb ...\r\nUnpacking autotools-dev (20140911.1) ...\r\nSelecting previously unselected package libgfortran3:amd64.\r\nPreparing to unpack .../libgfortran3_5.2.1-22ubuntu2_amd64.deb ...\r\nUnpacking libgfortran3:amd64 (5.2.1-22ubuntu2) ...\r\nSelecting previously unselected package libgfortran-5-dev:amd64.\r\nPreparing to unpack .../libgfortran-5-dev_5.2.1-22ubuntu2_amd64.deb ...\r\nUnpacking libgfortran-5-dev:amd64 (5.2.1-22ubuntu2) ...\r\nSelecting previously unselected package gfortran-5.\r\nPreparing to unpack .../gfortran-5_5.2.1-22ubuntu2_amd64.deb ...\r\nUnpacking gfortran-5 (5.2.1-22ubuntu2) ...\r\nSelecting previously unselected package gfortran.\r\nPreparing to unpack .../gfortran_4%3a5.2.1-3ubuntu1_amd64.deb ...\r\nUnpacking gfortran (4:5.2.1-3ubuntu1) ...\r\nSelecting previously unselected package liberror-perl.\r\nPreparing to unpack .../liberror-perl_0.17-1.1_all.deb ...\r\nUnpacking liberror-perl (0.17-1.1) ...\r\nSelecting previously unselected package git-man.\r\nPreparing to unpack .../git-man_1%3a2.5.0-1_all.deb ...\r\nUnpacking git-man (1:2.5.0-1) ...\r\nSelecting previously unselected package git.\r\nPreparing to unpack .../git_1%3a2.5.0-1_amd64.deb ...\r\nUnpacking git (1:2.5.0-1) ...\r\nSelecting previously unselected package git-core.\r\nPreparing to unpack .../git-core_1%3a2.5.0-1_all.deb ...\r\nUnpacking git-core (1:2.5.0-1) ...\r\nSelecting previously unselected package javascript-common.\r\nPreparing to unpack .../javascript-common_11_all.deb ...\r\nUnpacking javascript-common (11) ...\r\nSelecting previously unselected package libblas-common.\r\nPreparing to unpack .../libblas-common_1.2.20110419-10_amd64.deb ...\r\nUnpacking libblas-common (1.2.20110419-10) ...\r\nSelecting previously unselected package libblas3.\r\nPreparing to unpack .../libblas3_1.2.20110419-10_amd64.deb ...\r\nUnpacking libblas3 (1.2.20110419-10) ...\r\nSelecting previously unselected package libblas-dev.\r\nPreparing to unpack .../libblas-dev_1.2.20110419-10_amd64.deb ...\r\nUnpacking libblas-dev (1.2.20110419-10) ...\r\nSelecting previously unselected package libcr0.\r\nPreparing to unpack .../libcr0_0.8.5-2.2_amd64.deb ...\r\nUnpacking libcr0 (0.8.5-2.2) ...\r\nSelecting previously unselected package libexpat1-dev:amd64.\r\nPreparing to unpack .../libexpat1-dev_2.1.0-7_amd64.deb ...\r\nUnpacking libexpat1-dev:amd64 (2.1.0-7) ...\r\nSelecting previously unselected package libjs-excanvas.\r\nPreparing to unpack .../libjs-excanvas_0.r3-4_all.deb ...\r\nUnpacking libjs-excanvas (0.r3-4) ...\r\nSelecting previously unselected package liblapack3.\r\nPreparing to unpack .../liblapack3_3.5.0-4_amd64.deb ...\r\nUnpacking liblapack3 (3.5.0-4) ...\r\nSelecting previously unselected package liblapack-dev.\r\nPreparing to unpack .../liblapack-dev_3.5.0-4_amd64.deb ...\r\nUnpacking liblapack-dev (3.5.0-4) ...\r\nSelecting previously unselected package libltdl-dev:amd64.\r\nPreparing to unpack .../libltdl-dev_2.4.2-1.11_amd64.deb ...\r\nUnpacking libltdl-dev:amd64 (2.4.2-1.11) ...\r\nSelecting previously unselected package libpython2.7-dev:amd64.\r\nPreparing to unpack .../libpython2.7-dev_2.7.10-4ubuntu1_amd64.deb ...\r\nUnpacking libpython2.7-dev:amd64 (2.7.10-4ubuntu1) ...\r\nSelecting previously unselected package libpython-dev:amd64.\r\nPreparing to unpack .../libpython-dev_2.7.9-1_amd64.deb ...\r\nUnpacking libpython-dev:amd64 (2.7.9-1) ...\r\nSelecting previously unselected package libtool.\r\nPreparing to unpack .../libtool_2.4.2-1.11_all.deb ...\r\nUnpacking libtool (2.4.2-1.11) ...\r\nSelecting previously unselected package mercurial-common.\r\nPreparing to unpack .../mercurial-common_3.4-1ubuntu2_all.deb ...\r\nUnpacking mercurial-common (3.4-1ubuntu2) ...\r\nSelecting previously unselected package mercurial.\r\nPreparing to unpack .../mercurial_3.4-1ubuntu2_amd64.deb ...\r\nUnpacking mercurial (3.4-1ubuntu2) ...\r\nSelecting previously unselected package libibverbs1.\r\nPreparing to unpack .../libibverbs1_1.1.8-1.1ubuntu1_amd64.deb ...\r\nUnpacking libibverbs1 (1.1.8-1.1ubuntu1) ...\r\nSelecting previously unselected package libopenmpi1.6.\r\nPreparing to unpack .../libopenmpi1.6_1.6.5-11_amd64.deb ...\r\nUnpacking libopenmpi1.6 (1.6.5-11) ...\r\nSelecting previously unselected package openmpi-common.\r\nPreparing to unpack .../openmpi-common_1.6.5-11_all.deb ...\r\nUnpacking openmpi-common (1.6.5-11) ...\r\nSelecting previously unselected package openmpi-bin.\r\nPreparing to unpack .../openmpi-bin_1.6.5-11_amd64.deb ...\r\nUnpacking openmpi-bin (1.6.5-11) ...\r\nSelecting previously unselected package python-colorama.\r\nPreparing to unpack .../python-colorama_0.3.3-1_all.deb ...\r\nUnpacking python-colorama (0.3.3-1) ...\r\nSelecting previously unselected package python2.7-dev.\r\nPreparing to unpack .../python2.7-dev_2.7.10-4ubuntu1_amd64.deb ...\r\nUnpacking python2.7-dev (2.7.10-4ubuntu1) ...\r\nSelecting previously unselected package python-dev.\r\nPreparing to unpack .../python-dev_2.7.9-1_amd64.deb ...\r\nUnpacking python-dev (2.7.9-1) ...\r\nSelecting previously unselected package python-distlib.\r\nPreparing to unpack .../python-distlib_0.2.1-1_all.deb ...\r\nUnpacking python-distlib (0.2.1-1) ...\r\nSelecting previously unselected package python-ndg-httpsclient.\r\nPreparing to unpack .../python-ndg-httpsclient_0.4.0-1_all.deb ...\r\nUnpacking python-ndg-httpsclient (0.4.0-1) ...\r\nSelecting previously unselected package python-urllib3.\r\nPreparing to unpack .../python-urllib3_1.11-1_all.deb ...\r\nUnpacking python-urllib3 (1.11-1) ...\r\nSelecting previously unselected package python-requests.\r\nPreparing to unpack .../python-requests_2.7.0-3_all.deb ...\r\nUnpacking python-requests (2.7.0-3) ...\r\nSelecting previously unselected package python-setuptools.\r\nPreparing to unpack .../python-setuptools_18.4-1_all.deb ...\r\nUnpacking python-setuptools (18.4-1) ...\r\nSelecting previously unselected package python-pip.\r\nPreparing to unpack .../python-pip_1.5.6-7ubuntu1_all.deb ...\r\nUnpacking python-pip (1.5.6-7ubuntu1) ...\r\nSelecting previously unselected package python-wheel.\r\nPreparing to unpack .../python-wheel_0.26.0-1_all.deb ...\r\nUnpacking python-wheel (0.26.0-1) ...\r\nSelecting previously unselected package libnuma-dev:amd64.\r\nPreparing to unpack .../libnuma-dev_2.0.10-1ubuntu6_amd64.deb ...\r\nUnpacking libnuma-dev:amd64 (2.0.10-1ubuntu6) ...\r\nSelecting previously unselected package libhwloc-dev:amd64.\r\nPreparing to unpack .../libhwloc-dev_1.11.0-1_amd64.deb ...\r\nUnpacking libhwloc-dev:amd64 (1.11.0-1) ...\r\nSelecting previously unselected package ocl-icd-libopencl1:amd64.\r\nPreparing to unpack .../ocl-icd-libopencl1_2.2.7-2_amd64.deb ...\r\nUnpacking ocl-icd-libopencl1:amd64 (2.2.7-2) ...\r\nSelecting previously unselected package libhwloc-plugins.\r\nPreparing to unpack .../libhwloc-plugins_1.11.0-1_amd64.deb ...\r\nUnpacking libhwloc-plugins (1.11.0-1) ...\r\nSelecting previously unselected package libibverbs-dev.\r\nPreparing to unpack .../libibverbs-dev_1.1.8-1.1ubuntu1_amd64.deb ...\r\nUnpacking libibverbs-dev (1.1.8-1.1ubuntu1) ...\r\nSelecting previously unselected package libopenmpi-dev.\r\nPreparing to unpack .../libopenmpi-dev_1.6.5-11_amd64.deb ...\r\nUnpacking libopenmpi-dev (1.6.5-11) ...\r\nProcessing triggers for man-db (2.7.4-1) ...\r\nProcessing triggers for doc-base (0.10.6) ...\r\nProcessing 2 added doc-base files...\r\nSetting up cmake-data (3.2.2-2ubuntu3) ...\r\nSetting up libjsoncpp0v5:amd64 (0.10.5-1) ...\r\nSetting up cmake (3.2.2-2ubuntu3) ...\r\nSetting up libhwloc5:amd64 (1.11.0-1) ...\r\nSetting up autotools-dev (20140911.1) ...\r\nSetting up libgfortran3:amd64 (5.2.1-22ubuntu2) ...\r\nSetting up libgfortran-5-dev:amd64 (5.2.1-22ubuntu2) ...\r\nSetting up gfortran-5 (5.2.1-22ubuntu2) ...\r\nSetting up gfortran (4:5.2.1-3ubuntu1) ...\r\nupdate-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode\r\nupdate-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode\r\nSetting up liberror-perl (0.17-1.1) ...\r\nSetting up git-man (1:2.5.0-1) ...\r\nSetting up git (1:2.5.0-1) ...\r\nSetting up git-core (1:2.5.0-1) ...\r\nSetting up javascript-common (11) ...\r\nSetting up libblas-common (1.2.20110419-10) ...\r\nSetting up libblas3 (1.2.20110419-10) ...\r\nupdate-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode\r\nSetting up libblas-dev (1.2.20110419-10) ...\r\nupdate-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode\r\nSetting up libcr0 (0.8.5-2.2) ...\r\nSetting up libexpat1-dev:amd64 (2.1.0-7) ...\r\nSetting up libjs-excanvas (0.r3-4) ...\r\nSetting up liblapack3 (3.5.0-4) ...\r\nupdate-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode\r\nSetting up liblapack-dev (3.5.0-4) ...\r\nupdate-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode\r\nSetting up libltdl-dev:amd64 (2.4.2-1.11) ...\r\nSetting up libpython2.7-dev:amd64 (2.7.10-4ubuntu1) ...\r\nSetting up libpython-dev:amd64 (2.7.9-1) ...\r\nSetting up libtool (2.4.2-1.11) ...\r\nSetting up mercurial-common (3.4-1ubuntu2) ...\r\nSetting up mercurial (3.4-1ubuntu2) ...\r\n\r\nCreating config file /etc/mercurial/hgrc.d/hgext.rc with new version\r\nSetting up libibverbs1 (1.1.8-1.1ubuntu1) ...\r\nSetting up libopenmpi1.6 (1.6.5-11) ...\r\nSetting up openmpi-common (1.6.5-11) ...\r\nSetting up openmpi-bin (1.6.5-11) ...\r\nupdate-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode\r\nSetting up python-colorama (0.3.3-1) ...\r\nSetting up python2.7-dev (2.7.10-4ubuntu1) ...\r\nSetting up python-dev (2.7.9-1) ...\r\nSetting up python-distlib (0.2.1-1) ...\r\nSetting up python-ndg-httpsclient (0.4.0-1) ...\r\nSetting up python-urllib3 (1.11-1) ...\r\nSetting up python-requests (2.7.0-3) ...\r\nSetting up python-setuptools (18.4-1) ...\r\nSetting up python-pip (1.5.6-7ubuntu1) ...\r\nSetting up python-wheel (0.26.0-1) ...\r\nSetting up libnuma-dev:amd64 (2.0.10-1ubuntu6) ...\r\nSetting up libhwloc-dev:amd64 (1.11.0-1) ...\r\nSetting up ocl-icd-libopencl1:amd64 (2.2.7-2) ...\r\nSetting up libhwloc-plugins (1.11.0-1) ...\r\nSetting up libibverbs-dev (1.1.8-1.1ubuntu1) ...\r\nSetting up libopenmpi-dev (1.6.5-11) ...\r\nupdate-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode\r\nProcessing triggers for libc-bin (2.21-0ubuntu4) ...\r\nInstalling virtualenv.\r\nDownloading/unpacking virtualenv\r\n  Downloading virtualenv-13.1.2-py2.py3-none-any.whl (1.7MB): 1.7MB downloaded\r\nInstalling collected packages: virtualenv\r\nSuccessfully installed virtualenv\r\nCleaning up...\r\nVirtual env installed. Please run firedrake-install again.\r\n```\r\n```\r\nandrew@ubuntu:~$ python firedrake-install\r\napt 1.0.10.2ubuntu1 for amd64 compiled on Oct  5 2015 15:55:05\r\nSupported modules:\r\n*Ver: Standard .deb\r\n*Pkg:  Debian dpkg interface (Priority 30)\r\n Pkg:  Debian APT solver interface (Priority -1000)\r\n S.L: 'deb' Standard Debian binary tree\r\n S.L: 'deb-src' Standard Debian source tree\r\n Idx: Debian Source Index\r\n Idx: Debian Package Index\r\n Idx: Debian Translation Index\r\n Idx: Debian dpkg status file\r\n Idx: EDSP scenario file\r\nPackage: build-essential\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: devel\r\nInstalled-Size: 20\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nVersion: 12.1ubuntu2\r\nDepends: libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11)\r\nDescription: Informational list of build-essential packages\r\n If you do not plan to build Debian packages, you don't need this\r\n package.  Starting with dpkg (>= 1.14.18) this package is required\r\n for building Debian packages.\r\n .\r\n This package contains an informational list of packages which are\r\n considered essential for building Debian packages.  This package also\r\n depends on the packages on that list, to make it easy to have the\r\n build-essential packages installed.\r\n .\r\n If you have this package installed, you only need to install whatever\r\n a package specifies as its build-time dependencies to build the\r\n package.  Conversely, if you are determining what your package needs\r\n to build-depend on, you can always leave out the packages this\r\n package depends on.\r\n .\r\n This package is NOT the definition of what packages are\r\n build-essential; the real definition is in the Debian Policy Manual.\r\n This package contains merely an informational list, which is all\r\n most people need.   However, if this package and the manual disagree,\r\n the manual is correct.\r\nOriginal-Maintainer: Matthias Klose <doko@debian.org>\r\nChecking for presence of package build-essential...installed.\r\nPackage: python-dev\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: python\r\nInstalled-Size: 45\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nMulti-Arch: allowed\r\nSource: python-defaults\r\nVersion: 2.7.9-1\r\nDepends: python (= 2.7.9-1), libpython-dev (= 2.7.9-1), python2.7-dev (>= 2.7.9-1~)\r\nDescription: header files and a static library for Python (default)\r\n Header files, a static library and development tools for building\r\n Python modules, extending the Python interpreter or embedding Python\r\n in applications.\r\n .\r\n This package is a dependency package, which depends on Debian's default\r\n Python version (currently v2.7).\r\nOriginal-Maintainer: Matthias Klose <doko@debian.org>\r\nHomepage: http://www.python.org/\r\nChecking for presence of package python-dev...installed.\r\nPackage: git-core\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: vcs\r\nInstalled-Size: 8\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: all\r\nMulti-Arch: foreign\r\nSource: git\r\nVersion: 1:2.5.0-1\r\nDepends: git (>> 1:1.7.0.2)\r\nDescription: fast, scalable, distributed revision control system (obsolete)\r\n Git is popular version control system designed to handle very large\r\n projects with speed and efficiency; it is used for many high profile\r\n open source projects, most notably the Linux kernel.\r\n .\r\n Git falls in the category of distributed source code management tools.\r\n Every Git working directory is a full-fledged repository with full\r\n revision tracking capabilities, not dependent on network access or a\r\n central server.\r\n .\r\n This is a transitional dummy package.  The 'git-core' package has been\r\n renamed to 'git', which has been installed automatically.  This\r\n git-core package is now obsolete, and can safely be removed from the\r\n system if no other package depends on it.\r\nOriginal-Maintainer: Gerrit Pape <pape@smarden.org>\r\nHomepage: http://git-scm.com/\r\nChecking for presence of package git-core...installed.\r\nPackage: mercurial\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: vcs\r\nInstalled-Size: 213\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nVersion: 3.4-1ubuntu2\r\nDepends: libc6 (>= 2.14), python (<< 2.8), python (>= 2.7~), ucf (>= 2.0020), mercurial-common (= 3.4-1ubuntu2)\r\nRecommends: openssh-client\r\nSuggests: qct, kdiff3 | kdiff3-qt | kompare | meld | tkcvs | mgdiff\r\nBreaks: hgsubversion (<< 1.8-1), hgview-common (<< 1.8.1), mercurial-git (<= 0.6.1-2), qct (<< 1.7-2~)\r\nDescription: easy-to-use, scalable distributed version control system\r\n Mercurial is a fast, lightweight Source Control Management system designed\r\n for efficient handling of very large distributed projects.\r\n .\r\n Its features include:\r\n  * O(1) delta-compressed file storage and retrieval scheme\r\n  * Complete cross-indexing of files and changesets for efficient exploration\r\n    of project history\r\n  * Robust SHA1-based integrity checking and append-only storage model\r\n  * Decentralized development model with arbitrary merging between trees\r\n  * High-speed HTTP-based network merge protocol\r\n  * Easy-to-use command-line interface\r\n  * Integrated stand-alone web interface\r\n  * Small Python codebase\r\n .\r\n This package contains the architecture dependent files.\r\nHomepage: http://mercurial.selenic.com/\r\nOriginal-Maintainer: Python Applications Packaging Team <python-apps-team@lists.alioth.debian.org>\r\nChecking for presence of package mercurial...installed.\r\nPackage: python-pip\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: python\r\nInstalled-Size: 457\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: all\r\nVersion: 1.5.6-7ubuntu1\r\nDepends: ca-certificates, python-colorama, python-distlib, python-html5lib, python-pkg-resources, python-requests, python-setuptools (>= 0.6c1), python-six, python, python:any (<< 2.8), python:any (>= 2.7.5-5~)\r\nRecommends: build-essential, python-dev-all (>= 2.6), python-wheel\r\nDescription: alternative Python package installer\r\n pip is a replacement for easy_install, and is intended to be an improved\r\n Python package installer.  It integrates with virtualenv, doesn't do partial\r\n installs, can save package state for replaying, can install from non-egg\r\n sources, and can install from version control repositories.\r\nHomepage: http://www.pip-installer.org/\r\nOriginal-Maintainer: Debian Python Modules Team <python-modules-team@lists.alioth.debian.org>\r\nChecking for presence of package python-pip...installed.\r\nPackage: libopenmpi-dev\r\nStatus: install ok installed\r\nPriority: extra\r\nSection: libdevel\r\nInstalled-Size: 2879\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nSource: openmpi\r\nVersion: 1.6.5-11\r\nDepends: libc6 (>= 2.8), libopenmpi1.6 (= 1.6.5-11), openmpi-common (= 1.6.5-11), libibverbs-dev (>= 1.1.7), libhwloc-dev\r\nConflicts: libopenmpi-dev, openmpi-bin (<= 1.2.4-0), openmpi-dev\r\nDescription: high performance message passing library -- header files\r\n Open MPI is a project combining technologies and resources from several other\r\n projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best\r\n MPI library available. A completely new MPI-2 compliant implementation, Open\r\n MPI offers advantages for system and software vendors, application developers\r\n and computer science researchers.\r\n .\r\n This package contains the header files and compiler wrappers which are needed\r\n to compile and link programs against libopenmpi.\r\nOriginal-Maintainer: Debian Open MPI Maintainers <pkg-openmpi-maintainers@lists.alioth.debian.org>\r\nHomepage: http://www.open-mpi.org/\r\nChecking for presence of package libopenmpi-dev...installed.\r\nPackage: openmpi-bin\r\nStatus: install ok installed\r\nPriority: extra\r\nSection: net\r\nInstalled-Size: 381\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nSource: openmpi\r\nVersion: 1.6.5-11\r\nDepends: libc6 (>= 2.8), libopenmpi1.6, openmpi-common (= 1.6.5-11)\r\nSuggests: gfortran, openmpi-checkpoint\r\nConflicts: openmpi-bin\r\nConffiles:\r\n /etc/openmpi/openmpi-default-hostfile 4d7d71ebdeff9befad1c1077fcede06f\r\n /etc/openmpi/openmpi-mca-params.conf a580b08b8d721deffd5d003d57d6f61d\r\n /etc/openmpi/openmpi-totalview.tcl 9fb9ef7e46e3f47b6e60c5e7b55f66cc\r\nDescription: high performance message passing library -- binaries\r\n Open MPI is a project combining technologies and resources from several other\r\n projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in order to build the best\r\n MPI library available. A completely new MPI-2 compliant implementation, Open\r\n MPI offers advantages for system and software vendors, application developers\r\n and computer science researchers.\r\n .\r\n Features:\r\n  * Full MPI-2 standards conformance\r\n  * Thread safety and concurrency\r\n  * Dynamic process spawning\r\n  * High performance on all platforms\r\n  * Reliable and fast job management\r\n  * Network and process fault tolerance\r\n  * Support network heterogeneity\r\n  * Single library supports all networks\r\n  * Run-time instrumentation\r\n  * Many job schedulers supported\r\n  * Internationalized error messages\r\n  * Component-based design, documented APIs\r\n .\r\n This package contains the Open MPI utility programs.\r\nOriginal-Maintainer: Debian Open MPI Maintainers <pkg-openmpi-maintainers@lists.alioth.debian.org>\r\nHomepage: http://www.open-mpi.org/\r\nChecking for presence of package openmpi-bin...installed.\r\nPackage: libblas-dev\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: libdevel\r\nInstalled-Size: 1251\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nSource: blas\r\nVersion: 1.2.20110419-10\r\nProvides: libblas.so\r\nDepends: libblas3 (= 1.2.20110419-10)\r\nDescription: Basic Linear Algebra Subroutines 3, static library\r\n This package is a binary incompatible upgrade to the blas-dev\r\n package. Several minor changes to the C interface have been\r\n incorporated.\r\n .\r\n BLAS (Basic Linear Algebra Subroutines) is a set of efficient\r\n routines for most of the basic vector and matrix operations.\r\n They are widely used as the basis for other high quality linear\r\n algebra software, for example lapack and linpack.  This\r\n implementation is the Fortran 77 reference implementation found\r\n at netlib.\r\n .\r\n This package contains a static version of the library.\r\nOriginal-Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>\r\nHomepage: http://www.netlib.org/blas/\r\nChecking for presence of package libblas-dev...installed.\r\nPackage: liblapack-dev\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: libdevel\r\nInstalled-Size: 10592\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nSource: lapack\r\nVersion: 3.5.0-4\r\nProvides: liblapack.so\r\nDepends: liblapack3 (= 3.5.0-4), libblas-dev | libblas.so\r\nDescription: Library of linear algebra routines 3 - static version\r\n LAPACK version 3.X is a comprehensive FORTRAN library that does\r\n linear algebra operations including matrix inversions, least\r\n squared solutions to linear sets of equations, eigenvector\r\n analysis, singular value decomposition, etc. It is a very\r\n comprehensive and reputable package that has found extensive\r\n use in the scientific community.\r\nOriginal-Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org>\r\nHomepage: http://www.netlib.org/lapack/\r\nChecking for presence of package liblapack-dev...installed.\r\nPackage: gfortran\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: devel\r\nInstalled-Size: 15\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nSource: gcc-defaults (1.144ubuntu1)\r\nVersion: 4:5.2.1-3ubuntu1\r\nProvides: fortran-compiler\r\nDepends: cpp (>= 4:5.2.1-3ubuntu1), gcc (>= 4:5.2.1-3ubuntu1), gfortran-5 (>= 5.2.1-12~)\r\nSuggests: gfortran-multilib, gfortran-doc\r\nDescription: GNU Fortran 95 compiler\r\n This is the GNU Fortran 95 compiler, which compiles Fortran 95 on platforms\r\n supported by the gcc compiler. It uses the gcc backend to generate optimized\r\n code.\r\n .\r\n This is a dependency package providing the default GNU Fortran 95 compiler.\r\nOriginal-Maintainer: Debian GCC Maintainers <debian-gcc@lists.debian.org>\r\nChecking for presence of package gfortran...installed.\r\nPackage: cmake\r\nStatus: install ok installed\r\nPriority: optional\r\nSection: devel\r\nInstalled-Size: 13822\r\nMaintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>\r\nArchitecture: amd64\r\nMulti-Arch: foreign\r\nVersion: 3.2.2-2ubuntu3\r\nDepends: cmake-data (= 3.2.2-2ubuntu3), procps, libarchive13, libc6 (>= 2.15), libcurl3 (>= 7.16.2), libexpat1 (>= 2.0.1), libgcc1 (>= 1:4.1.1), libjsoncpp0v5, libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3)\r\nPre-Depends: dpkg (>= 1.17.5~)\r\nRecommends: gcc, make\r\nSuggests: codeblocks, eclipse, ninja-build\r\nConffiles:\r\n /etc/bash_completion.d/cmake 89a2635a79da8cbc1c78dd7e50e56898\r\n /etc/bash_completion.d/cpack 8d65632f9a6c67527019978f17469d7d\r\n /etc/bash_completion.d/ctest 6d4ba44ad1a0f63e9a6415c6e4ff36bc\r\nDescription: cross-platform, open-source make system\r\n CMake is used to control the software compilation process using\r\n simple platform and compiler independent configuration files. CMake\r\n generates native makefiles and workspaces that can be used in the\r\n compiler environment of your choice. CMake is quite sophisticated: it\r\n is possible to support complex environments requiring system\r\n configuration, pre-processor generation, code generation, and template\r\n instantiation.\r\n .\r\n CMake was developed by Kitware as part of the NLM Insight\r\n Segmentation and Registration Toolkit project. The ASCI VIEWS project\r\n also provided support in the context of their parallel computation\r\n environment. Other sponsors include the Insight, VTK, and VXL open\r\n source software communities.\r\nHomepage: http://cmake.org/\r\nOriginal-Maintainer: Modestas Vainius <modax@debian.org>\r\nChecking for presence of package cmake...installed.\r\nCreating firedrake virtualenv.\r\n/home/andrew/firedrake/bin/pip install -U pip\r\nRequirement already up-to-date: pip in ./firedrake/lib/python2.7/site-packages\r\nCloning firedrake\r\nThe authenticity of host 'github.com (192.30.252.129)' can't be established.\r\nRSA key fingerprint is SHA256:nThbg6kXUpJWGl7E1IGOCspRomTxdCARLviKw6E5SY8.\r\nAre you sure you want to continue connecting (yes/no)? yes\r\nWarning: Permanently added 'github.com,192.30.252.129' (RSA) to the list of known hosts.\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone firedrake using ssh, falling back to https.\r\nCloning into 'firedrake'...\r\nremote: Counting objects: 12602, done.\r\nremote: Compressing objects: 100% (156/156), done.\r\nremote: Total 12602 (delta 106), reused 12 (delta 12), pack-reused 12434\r\nReceiving objects: 100% (12602/12602), 11.54 MiB | 774.00 KiB/s, done.\r\nResolving deltas: 100% (8214/8214), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned firedrake branch master.\r\nCloning the dependencies of firedrake\r\nCloning instant\r\nThe authenticity of host 'bitbucket.org (131.103.20.167)' can't be established.\r\nRSA key fingerprint is SHA256:zzXQOXSRBEiUtuE8AikJYKwbHaxvSc0ojez9YXaGp1A.\r\nAre you sure you want to continue connecting (yes/no)? yes\r\nWarning: Permanently added 'bitbucket.org,131.103.20.167' (RSA) to the list of known hosts.\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone instant using ssh, falling back to https.\r\nCloning into 'instant'...\r\nremote: Counting objects: 2893, done.\r\nremote: Compressing objects: 100% (941/941), done.\r\nremote: Total 2893 (delta 1970), reused 2580 (delta 1755)\r\nReceiving objects: 100% (2893/2893), 533.96 KiB | 383.00 KiB/s, done.\r\nResolving deltas: 100% (1970/1970), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned instant branch master.\r\nCloning ufl\r\nWarning: Permanently added the RSA host key for IP address '131.103.20.168' to the list of known hosts.\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone ufl using ssh, falling back to https.\r\nCloning into 'ufl'...\r\nremote: Counting objects: 18321, done.\r\nremote: Compressing objects: 100% (4780/4780), done.\r\nremote: Total 18321 (delta 14808), reused 16934 (delta 13511)\r\nReceiving objects: 100% (18321/18321), 2.89 MiB | 674.00 KiB/s, done.\r\nResolving deltas: 100% (14808/14808), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned ufl branch master.\r\nCloning fiat\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone fiat using ssh, falling back to https.\r\nCloning into 'fiat'...\r\nremote: Counting objects: 2326, done.\r\nremote: Compressing objects: 100% (1018/1018), done.\r\nremote: Total 2326 (delta 1626), reused 1800 (delta 1268)\r\nReceiving objects: 100% (2326/2326), 480.45 KiB | 407.00 KiB/s, done.\r\nResolving deltas: 100% (1626/1626), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned fiat branch master.\r\nCloning ffc\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone ffc using ssh, falling back to https.\r\nCloning into 'ffc'...\r\nremote: Counting objects: 33048, done.\r\nremote: Compressing objects: 100% (7864/7864), done.\r\nremote: Total 33048 (delta 24563), reused 32949 (delta 24496)\r\nReceiving objects: 100% (33048/33048), 4.83 MiB | 595.00 KiB/s, done.\r\nResolving deltas: 100% (24563/24563), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned ffc branch master.\r\nCloning PyOP2\r\nWarning: Permanently added the RSA host key for IP address '192.30.252.128' to the list of known hosts.\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone PyOP2 using ssh, falling back to https.\r\nCloning into 'PyOP2'...\r\nremote: Counting objects: 17282, done.\r\nremote: Compressing objects: 100% (84/84), done.\r\nremote: Total 17282 (delta 54), reused 0 (delta 0), pack-reused 17198\r\nReceiving objects: 100% (17282/17282), 9.01 MiB | 766.00 KiB/s, done.\r\nResolving deltas: 100% (11572/11572), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned PyOP2 branch master.\r\nCloning the dependencies of PyOP2\r\nCloning petsc\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone petsc using ssh, falling back to https.\r\nCloning into 'petsc'...\r\nremote: Counting objects: 637500, done.\r\nremote: Compressing objects: 100% (176541/176541), done.\r\nremote: Total 637500 (delta 486125), reused 597445 (delta 458009)\r\nReceiving objects: 100% (637500/637500), 117.43 MiB | 635.00 KiB/s, done.\r\nResolving deltas: 100% (486125/486125), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned petsc branch firedrake.\r\nCloning petsc4py\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone petsc4py using ssh, falling back to https.\r\nCloning into 'petsc4py'...\r\nremote: Counting objects: 9949, done.\r\nremote: Compressing objects: 100% (2788/2788), done.\r\nremote: Total 9949 (delta 7507), reused 9175 (delta 6904)\r\nReceiving objects: 100% (9949/9949), 1.33 MiB | 618.00 KiB/s, done.\r\nResolving deltas: 100% (7507/7507), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned petsc4py branch firedrake.\r\nCloning COFFEE\r\nWarning: Permanently added the RSA host key for IP address '192.30.252.130' to the list of known hosts.\r\nPermission denied (publickey).\r\nfatal: Could not read from remote repository.\r\n\r\nPlease make sure you have the correct access rights\r\nand the repository exists.\r\nFailed to clone COFFEE using ssh, falling back to https.\r\nCloning into 'COFFEE'...\r\nremote: Counting objects: 2874, done.\r\nremote: Compressing objects: 100% (4/4), done.\r\nremote: Total 2874 (delta 0), reused 0 (delta 0), pack-reused 2870\r\nReceiving objects: 100% (2874/2874), 885.35 KiB | 757.00 KiB/s, done.\r\nResolving deltas: 100% (2094/2094), done.\r\nChecking connectivity... done.\r\nSuccessfully cloned COFFEE branch master.\r\n/home/andrew/firedrake/bin/pip install Cython>=0.22\r\nCollecting Cython>=0.22\r\n  Downloading Cython-0.23.4.tar.gz (1.6MB)\r\n    100% |████████████████████████████████| 1.6MB 277kB/s \r\nBuilding wheels for collected packages: Cython\r\n  Running setup.py bdist_wheel for Cython\r\n  Stored in directory: /home/andrew/.cache/pip/wheels/54/26/ba/05c8576cfb4c49c315c618d4a7ffd4df636b3df1d521f53f2c\r\nSuccessfully built Cython\r\nInstalling collected packages: Cython\r\nSuccessfully installed Cython-0.23.4\r\nInstalling petsc/\r\n/home/andrew/firedrake/bin/pip install --no-deps --ignore-installed petsc/\r\nProcessing ./petsc\r\nInstalling collected packages: petsc\r\n  Running setup.py install for petsc\r\n```\r\nOne hour later, it was still at this stage.\r\n```\r\n^CTraceback (most recent call last):\r\n  File \"firedrake-install\", line 422, in <module>\r\n    install(\"petsc/\")\r\n  File \"firedrake-install\", line 268, in install\r\n    run_pip([\"--ignore-installed\", package])\r\n  File \"firedrake-install\", line 249, in run_pip\r\n    check_call(sudopip + args)\r\n  File \"firedrake-install\", line 163, in check_call\r\n    subprocess.check_call(arguments)\r\n  File \"/usr/lib/python2.7/subprocess.py\", line 535, in check_call\r\n    retcode = call(*popenargs, **kwargs)\r\n  File \"/usr/lib/python2.7/subprocess.py\", line 522, in call\r\n    return Popen(*popenargs, **kwargs).wait()\r\n  File \"/usr/lib/python2.7/subprocess.py\", line 1384, in wait\r\n    pid, sts = _eintr_retry_call(os.waitpid, self.pid, 0)\r\n  File \"/usr/lib/python2.7/subprocess.py\", line 476, in _eintr_retry_call\r\n    return func(*args)\r\nKeyboardInterrupt\r\nandrew@ubuntu:~$ Operation cancelled by user\r\n^C\r\nandrew@ubuntu:~$ \r\n```"},"comment":{"url":"https://api.github.com/repos/firedrakeproject/firedrake/issues/comments/150631929","html_url":"https://github.com/firedrakeproject/firedrake/issues/617#issuecomment-150631929","issue_url":"https://api.github.com/repos/firedrakeproject/firedrake/issues/617","id":150631929,"user":{"login":"dham","id":848103,"avatar_url":"https://avatars.githubusercontent.com/u/848103?v=3","gravatar_id":"","url":"https://api.github.com/users/dham","html_url":"https://github.com/dham","followers_url":"https://api.github.com/users/dham/followers","following_url":"https://api.github.com/users/dham/following{/other_user}","gists_url":"https://api.github.com/users/dham/gists{/gist_id}","starred_url":"https://api.github.com/users/dham/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dham/subscriptions","organizations_url":"https://api.github.com/users/dham/orgs","repos_url":"https://api.github.com/users/dham/repos","events_url":"https://api.github.com/users/dham/events{/privacy}","received_events_url":"https://api.github.com/users/dham/received_events","type":"User","site_admin":false},"created_at":"2015-10-23T16:54:36Z","updated_at":"2015-10-23T16:54:36Z","body":"I'm mystified. That's exactly what the script does.\r\n"}}