{"action":"opened","issue":{"url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/972","labels_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/972/labels{/name}","comments_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/972/comments","events_url":"https://api.github.com/repos/The-Sequence-Ontology/SO-Ontologies/issues/972/events","html_url":"https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/972","id":86257774,"number":972,"title":"can gene_cassette go into SOFA?","user":{"login":"srynobio","id":1106139,"avatar_url":"https://avatars.githubusercontent.com/u/1106139?v=3","gravatar_id":"","url":"https://api.github.com/users/srynobio","html_url":"https://github.com/srynobio","followers_url":"https://api.github.com/users/srynobio/followers","following_url":"https://api.github.com/users/srynobio/following{/other_user}","gists_url":"https://api.github.com/users/srynobio/gists{/gist_id}","starred_url":"https://api.github.com/users/srynobio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/srynobio/subscriptions","organizations_url":"https://api.github.com/users/srynobio/orgs","repos_url":"https://api.github.com/users/srynobio/repos","events_url":"https://api.github.com/users/srynobio/events{/privacy}","received_events_url":"https://api.github.com/users/srynobio/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-06-08T17:08:18Z","updated_at":"2015-06-08T17:08:18Z","closed_at":null,"body":"**Reported by srengel on 2007-11-15 00:10 UTC**\nHi,\r\nWe're working on our GFF3 here at SGD, and are wondering if we can have gene\\_cassette added to SOFA so that we can use it.\r\n\r\nAlso, i'm wondering if perhaps gene\\_cassette and gene\\_cassette\\_array should have their positions swapped in the ontology.  it seems that perhaps they were inadvertently added in the wrong orientation.  \r\n\r\nas it currently is, we have gene\\_cassette\\_array is\\_a gene\\_cassette is\\_a gene\\_group.\r\n\r\nit makes more sense, however, to be gene\\_cassette PART\\_OF gene\\_cassette\\_array is\\_a gene\\_group.\r\n\r\n\\[Term\\]\r\nid: SO:0005853\r\nname: gene\\_cassette\r\ndef: \"A non-functional gene that, when captured by recombination forms a functional gene.\" \\[SO:ma\\]\r\ncomment: This would include, for example, the mating type gene cassettes of S. cerevisiae.\r\nis\\_a: SO:0005855 \\! gene\\_group\r\n\r\n\\[Term\\]\r\nid: SO:0005854\r\nname: gene\\_cassette\\_array\r\ndef: \"An array of non-functional genes whose members, when captured by recombination form functional genes.\" \\[SO:ma\\]\r\ncomment: This would include, for example, the arrays of non-functional VSG genes of Trypanosomes.\r\nis\\_a: SO:0005853 \\! gene\\_cassette\r\n\r\nplease advise. \r\nthanks,\r\nstacia\r\n"}}