{"action":"created","issue":{"url":"https://api.github.com/repos/timpx/scripts/issues/37","labels_url":"https://api.github.com/repos/timpx/scripts/issues/37/labels{/name}","comments_url":"https://api.github.com/repos/timpx/scripts/issues/37/comments","events_url":"https://api.github.com/repos/timpx/scripts/issues/37/events","html_url":"https://github.com/timpx/scripts/issues/37","id":77249258,"number":37,"title":"K_list=3, subparcel.m \"error using read\"","user":{"login":"maedoc","id":5189886,"avatar_url":"https://avatars.githubusercontent.com/u/5189886?v=3","gravatar_id":"","url":"https://api.github.com/users/maedoc","html_url":"https://github.com/maedoc","followers_url":"https://api.github.com/users/maedoc/followers","following_url":"https://api.github.com/users/maedoc/following{/other_user}","gists_url":"https://api.github.com/users/maedoc/gists{/gist_id}","starred_url":"https://api.github.com/users/maedoc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maedoc/subscriptions","organizations_url":"https://api.github.com/users/maedoc/orgs","repos_url":"https://api.github.com/users/maedoc/repos","events_url":"https://api.github.com/users/maedoc/events{/privacy}","received_events_url":"https://api.github.com/users/maedoc/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-05-17T08:01:28Z","updated_at":"2015-05-17T10:06:15Z","closed_at":null,"body":"After deleting `$PRD/connectivity/*` and rerunning with newest mrtrix and scripts, I have\r\n\r\n```\r\ncurr_K =\r\n8\r\n\r\nK =\r\n     3\r\n\r\nPRD =\r\n/home/duke/vibrations/scripts/proc/ol/scripts/..\r\n\r\nSUBJ_ID =\r\nol\r\n\r\nError using read (line 21)\r\nFile missing.\\n\r\n\r\nError in subparcel (line 80)\r\n```\r\n\r\nMy config.sh is \r\n\r\n```bash\r\nexport PRD=/home/duke/vibrations/scripts/proc/ol/scripts/..\r\nexport FS=/home/duke/vibrations/fs\r\nexport SUBJ_ID=ol\r\nexport FSL=\"\"\r\nexport MCR=/home/duke/mcr/v81\r\nset -e\r\nexport CHECK=no\r\n\r\nexport percent_value_mask=10\r\nexport lmax=6 \r\nexport region_mapping_corr=\"0.42\"\r\nexport number_tracks=5000000\r\nexport K_list=3 # subdivide parcellation into 70*2^k regions\r\nexport parcel=AAL\r\nexport eddy_correct=simple\r\nexport act=yes\r\nexport sift=yes\r\nexport topup=\"reversed\"\r\n```\r\nI had forgot to pull latest changes from scripts for the topup reveresed, so now I'm rerunning, but this seems like an unrelated issue so I'm posting it anyways."},"comment":{"url":"https://api.github.com/repos/timpx/scripts/issues/comments/102779377","html_url":"https://github.com/timpx/scripts/issues/37#issuecomment-102779377","issue_url":"https://api.github.com/repos/timpx/scripts/issues/37","id":102779377,"user":{"login":"timpx","id":5063219,"avatar_url":"https://avatars.githubusercontent.com/u/5063219?v=3","gravatar_id":"","url":"https://api.github.com/users/timpx","html_url":"https://github.com/timpx","followers_url":"https://api.github.com/users/timpx/followers","following_url":"https://api.github.com/users/timpx/following{/other_user}","gists_url":"https://api.github.com/users/timpx/gists{/gist_id}","starred_url":"https://api.github.com/users/timpx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/timpx/subscriptions","organizations_url":"https://api.github.com/users/timpx/orgs","repos_url":"https://api.github.com/users/timpx/repos","events_url":"https://api.github.com/users/timpx/events{/privacy}","received_events_url":"https://api.github.com/users/timpx/received_events","type":"User","site_admin":false},"created_at":"2015-05-17T10:06:15Z","updated_at":"2015-05-17T10:06:15Z","body":"Could you check if you have a $\"PRD\"/connectivity/aparcaseg_2_diff_cortical_only.nii and a $\"PRD\"/connectivity/aparcaseg_2_diff.nii.gz file?"}}