{"action":"created","issue":{"url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/1","labels_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/1/comments","events_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/1/events","html_url":"https://github.com/VDBWRAIR/bio_pieces/issues/1","id":65709538,"number":1,"title":"bam2fastq","user":{"login":"necrolyte2","id":378659,"avatar_url":"https://avatars.githubusercontent.com/u/378659?v=3","gravatar_id":"","url":"https://api.github.com/users/necrolyte2","html_url":"https://github.com/necrolyte2","followers_url":"https://api.github.com/users/necrolyte2/followers","following_url":"https://api.github.com/users/necrolyte2/following{/other_user}","gists_url":"https://api.github.com/users/necrolyte2/gists{/gist_id}","starred_url":"https://api.github.com/users/necrolyte2/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/necrolyte2/subscriptions","organizations_url":"https://api.github.com/users/necrolyte2/orgs","repos_url":"https://api.github.com/users/necrolyte2/repos","events_url":"https://api.github.com/users/necrolyte2/events{/privacy}","received_events_url":"https://api.github.com/users/necrolyte2/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"closed","locked":false,"assignee":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"milestone":null,"comments":2,"created_at":"2015-04-01T15:15:35Z","updated_at":"2015-06-12T13:32:12Z","closed_at":"2015-06-12T13:32:12Z","body":"New addition that will be able to extract fastq reads from bam file\r\n\r\n- By default just dump all reads from bam file into mapped.fastq and unmapped.fastq\r\n- Option to specify output file locations\r\n- Have an option(--per-reference) that would flag to split each reference into its own fastq file\r\n  - How would each reference fastq files be named? Sometimes reference names are really long\r\n    and contain non [a-Z0-9] characters\r\n- How to handle the unmapped reads for each reference?"},"comment":{"url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/comments/111493929","html_url":"https://github.com/VDBWRAIR/bio_pieces/issues/1#issuecomment-111493929","issue_url":"https://api.github.com/repos/VDBWRAIR/bio_pieces/issues/1","id":111493929,"user":{"login":"averagehat","id":5606168,"avatar_url":"https://avatars.githubusercontent.com/u/5606168?v=3","gravatar_id":"","url":"https://api.github.com/users/averagehat","html_url":"https://github.com/averagehat","followers_url":"https://api.github.com/users/averagehat/followers","following_url":"https://api.github.com/users/averagehat/following{/other_user}","gists_url":"https://api.github.com/users/averagehat/gists{/gist_id}","starred_url":"https://api.github.com/users/averagehat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/averagehat/subscriptions","organizations_url":"https://api.github.com/users/averagehat/orgs","repos_url":"https://api.github.com/users/averagehat/repos","events_url":"https://api.github.com/users/averagehat/events{/privacy}","received_events_url":"https://api.github.com/users/averagehat/received_events","type":"User","site_admin":false},"created_at":"2015-06-12T13:32:12Z","updated_at":"2015-06-12T13:32:12Z","body":"closed, see VDBWRAIR/ngs_mapper/issues/113"}}