{"action":"created","issue":{"url":"https://api.github.com/repos/Ensembl/ensembl-compara/issues/29","labels_url":"https://api.github.com/repos/Ensembl/ensembl-compara/issues/29/labels{/name}","comments_url":"https://api.github.com/repos/Ensembl/ensembl-compara/issues/29/comments","events_url":"https://api.github.com/repos/Ensembl/ensembl-compara/issues/29/events","html_url":"https://github.com/Ensembl/ensembl-compara/pull/29","id":65953199,"number":29,"title":"Vega59 fixes.","user":{"login":"ens-ds23","id":6160073,"avatar_url":"https://avatars.githubusercontent.com/u/6160073?v=3","gravatar_id":"","url":"https://api.github.com/users/ens-ds23","html_url":"https://github.com/ens-ds23","followers_url":"https://api.github.com/users/ens-ds23/followers","following_url":"https://api.github.com/users/ens-ds23/following{/other_user}","gists_url":"https://api.github.com/users/ens-ds23/gists{/gist_id}","starred_url":"https://api.github.com/users/ens-ds23/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ens-ds23/subscriptions","organizations_url":"https://api.github.com/users/ens-ds23/orgs","repos_url":"https://api.github.com/users/ens-ds23/repos","events_url":"https://api.github.com/users/ens-ds23/events{/privacy}","received_events_url":"https://api.github.com/users/ens-ds23/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-04-02T15:35:23Z","updated_at":"2015-04-07T16:07:42Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/Ensembl/ensembl-compara/pulls/29","html_url":"https://github.com/Ensembl/ensembl-compara/pull/29","diff_url":"https://github.com/Ensembl/ensembl-compara/pull/29.diff","patch_url":"https://github.com/Ensembl/ensembl-compara/pull/29.patch"},"body":"Including a modification to PrepareSpeciesSetsMLSS to allow master database with SS and MLSS missing.\r\n\r\nFeel free to rename and rearrange the param, etc, if needed."},"comment":{"url":"https://api.github.com/repos/Ensembl/ensembl-compara/issues/comments/90623015","html_url":"https://github.com/Ensembl/ensembl-compara/pull/29#issuecomment-90623015","issue_url":"https://api.github.com/repos/Ensembl/ensembl-compara/issues/29","id":90623015,"user":{"login":"muffato","id":623458,"avatar_url":"https://avatars.githubusercontent.com/u/623458?v=3","gravatar_id":"","url":"https://api.github.com/users/muffato","html_url":"https://github.com/muffato","followers_url":"https://api.github.com/users/muffato/followers","following_url":"https://api.github.com/users/muffato/following{/other_user}","gists_url":"https://api.github.com/users/muffato/gists{/gist_id}","starred_url":"https://api.github.com/users/muffato/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/muffato/subscriptions","organizations_url":"https://api.github.com/users/muffato/orgs","repos_url":"https://api.github.com/users/muffato/repos","events_url":"https://api.github.com/users/muffato/events{/privacy}","received_events_url":"https://api.github.com/users/muffato/received_events","type":"User","site_admin":false},"created_at":"2015-04-07T16:07:42Z","updated_at":"2015-04-07T16:07:42Z","body":"OK for the modifications in the config files. It is in fact similar in spirit to the edits that are made to the PairAligner. I'll try to make something generic in a base class so that you only have to override analyses_to_remove() and tweak_analyses()\r\n\r\nI still have to look at PrepareSpeciesSetsMLSS. Nothing wrong in principle: I just want to think carefully of the use case"}}