{"action":"opened","issue":{"url":"https://api.github.com/repos/cole-trapnell-lab/cufflinks/issues/44","labels_url":"https://api.github.com/repos/cole-trapnell-lab/cufflinks/issues/44/labels{/name}","comments_url":"https://api.github.com/repos/cole-trapnell-lab/cufflinks/issues/44/comments","events_url":"https://api.github.com/repos/cole-trapnell-lab/cufflinks/issues/44/events","html_url":"https://github.com/cole-trapnell-lab/cufflinks/issues/44","id":109835908,"number":44,"title":"cufflinks throwing error while using  --library-norm-method","user":{"login":"ranijames","id":7900965,"avatar_url":"https://avatars.githubusercontent.com/u/7900965?v=3","gravatar_id":"","url":"https://api.github.com/users/ranijames","html_url":"https://github.com/ranijames","followers_url":"https://api.github.com/users/ranijames/followers","following_url":"https://api.github.com/users/ranijames/following{/other_user}","gists_url":"https://api.github.com/users/ranijames/gists{/gist_id}","starred_url":"https://api.github.com/users/ranijames/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ranijames/subscriptions","organizations_url":"https://api.github.com/users/ranijames/orgs","repos_url":"https://api.github.com/users/ranijames/repos","events_url":"https://api.github.com/users/ranijames/events{/privacy}","received_events_url":"https://api.github.com/users/ranijames/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-10-05T16:25:06Z","updated_at":"2015-10-05T16:25:06Z","closed_at":null,"body":"Hello All,\r\nCufflinks is not recognizing the option --library-norm-method while finding the transcript abundance.\r\nwhile using it on the following command line \r\n\r\ncufflinks --num-threads 10 --quiet --no-update-check --max-bundle-frags 2000000 --library-type fr-unstranded --frag-bias-correct --library-norm-method  /human_genome37.fa --multi-read-correct --GTF-guide /ref-transcripts.gtf --output-dir  BM_CR_pat_4.txt BM_CR_pat_4.bam\r\nand its throwing following error,\r\n\r\nError: file/directory --library-norm-method does not exist!\r\n\r\n"}}