{"action":"created","issue":{"url":"https://api.github.com/repos/nipy/dipy/issues/354","labels_url":"https://api.github.com/repos/nipy/dipy/issues/354/labels{/name}","comments_url":"https://api.github.com/repos/nipy/dipy/issues/354/comments","events_url":"https://api.github.com/repos/nipy/dipy/issues/354/events","html_url":"https://github.com/nipy/dipy/issues/354","id":32157868,"number":354,"title":"Test failures of 0.7.1 on wheezy and squeeze 32bit","user":{"login":"yarikoptic","id":39889,"avatar_url":"https://avatars.githubusercontent.com/u/39889?v=3","gravatar_id":"","url":"https://api.github.com/users/yarikoptic","html_url":"https://github.com/yarikoptic","followers_url":"https://api.github.com/users/yarikoptic/followers","following_url":"https://api.github.com/users/yarikoptic/following{/other_user}","gists_url":"https://api.github.com/users/yarikoptic/gists{/gist_id}","starred_url":"https://api.github.com/users/yarikoptic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yarikoptic/subscriptions","organizations_url":"https://api.github.com/users/yarikoptic/orgs","repos_url":"https://api.github.com/users/yarikoptic/repos","events_url":"https://api.github.com/users/yarikoptic/events{/privacy}","received_events_url":"https://api.github.com/users/yarikoptic/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":19,"created_at":"2014-04-24T15:19:04Z","updated_at":"2015-01-09T00:11:21Z","closed_at":"2015-01-08T21:22:48Z","body":"per report on the mailing list\r\n\r\nwheezy:\r\n```\r\n======================================================================\r\nERROR: dipy.tests.test_scripts.test_dipy_fit_tensor_again\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/python2.6/dist-packages/nose/case.py\", line 197, in runTest\r\n    self.test(*self.arg)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 161, in test_dipy_fit_tensor_again\r\n    out = run_command(cmd)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 120, in run_command\r\n    \"\"\".format(cmd, stdout, stderr))\r\nRuntimeError: Command \"['dipy_fit_tensor', '--mask=none', 'small_25.nii.gz']\" failed with\r\n            stdout\r\n            ------\r\n\r\n            stderr\r\n            ------\r\n            /tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/core/sphere.py:12: RuntimeWarning: compiletime version 2.6 of module 'dipy.reconst.recspeed' does not match runtime version 2.7\r\n  from dipy.reconst.recspeed import remove_similar_vertices\r\n\r\n\r\n\r\n======================================================================\r\nFAIL: dipy.tests.test_scripts.test_dipy_peak_extraction\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/python2.6/dist-packages/nose/case.py\", line 197, in runTest\r\n    self.test(*self.arg)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 128, in test_dipy_peak_extraction\r\n    assert_equal(code, 2)\r\nAssertionError: -11 != 2\r\n\r\n======================================================================\r\nFAIL: dipy.tests.test_scripts.test_dipy_fit_tensor\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/python2.6/dist-packages/nose/case.py\", line 197, in runTest\r\n    self.test(*self.arg)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 135, in test_dipy_fit_tensor\r\n    assert_equal(code, 2)\r\nAssertionError: -11 != 2\r\n\r\n======================================================================\r\nFAIL: dipy.tests.test_scripts.test_dipy_sh_estimate\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/python2.6/dist-packages/nose/case.py\", line 197, in runTest\r\n    self.test(*self.arg)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 142, in test_dipy_sh_estimate\r\n    assert_equal(code, 2)\r\nAssertionError: -11 != 2\r\n\r\n----------------------------------------------------------------------\r\nRan 212 tests in 105.679s\r\n\r\nFAILED (SKIP=4, errors=1, failures=3)\r\n```\r\n\r\nsqueeze:\r\n\r\n```\r\n======================================================================\r\nERROR: dipy.reconst.tests.test_shore_odf.test_shore_odf\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/pymodules/python2.6/nose/case.py\", line 183, in runTest\r\n    self.test(*self.arg)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/reconst/tests/test_shore_odf.py\", line 37, in test_shore_odf\r\n    directions, _ , _ = peak_directions(odf, sphere, .35, 25)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/reconst/peaks.py\", line 130, in peak_directions\r\n    values, indices = local_maxima(odf, sphere.edges)\r\n  File \"recspeed.pyx\", line 269, in dipy.reconst.recspeed.local_maxima (dipy/reconst/recspeed.c:4339)\r\nValueError: odf can not have nans\r\n\r\n======================================================================\r\nERROR: dipy.tests.test_scripts.test_qb_commandline\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/pymodules/python2.6/nose/case.py\", line 183, in runTest\r\n    self.test(*self.arg)\r\n  File \"/usr/lib/pymodules/python2.6/numpy/testing/decorators.py\", line 146, in skipper_func\r\n    return f(*args, **kwargs)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 208, in test_qb_commandline\r\n    out = run_command(cmd)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/tests/test_scripts.py\", line 120, in run_command\r\n    \"\"\".format(cmd, stdout, stderr))\r\nRuntimeError: Command \"['dipy_quickbundles', '/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/data/tracks300.trk', '--pkl_file', 'mypickle.pkl', '--out_file', 'tracks300.trk']\" failed with\r\n            stdout\r\n            ------\r\n\r\n            stderr\r\n            ------\r\n            Traceback (most recent call last):\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/bin/dipy_quickbundles\", line 53, in <module>\r\n    np.array(streamlines)[clusters[c]['indices']]]\r\nValueError: setting an array element with a sequence.\r\n\r\n\r\n\r\n======================================================================\r\nFAIL: dipy.reconst.tests.test_shore_metrics.test_shore_metrics\r\n----------------------------------------------------------------------\r\nTraceback (most recent call last):\r\n  File \"/usr/lib/pymodules/python2.6/nose/case.py\", line 183, in runTest\r\n    self.test(*self.arg)\r\n  File \"/tmp/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.6/dist-packages/dipy/reconst/tests/test_shore_metrics.py\", line 90, in test_shore_metrics\r\n    assert_equal(msd_mt / msd_shore < 1.05 and msd_mt / msd_shore > 0.95, True)\r\n  File \"/usr/lib/pymodules/python2.6/numpy/testing/utils.py\", line 309, in assert_equal\r\n    raise AssertionError(msg)\r\nAssertionError:\r\nItems are not equal:\r\n ACTUAL: False\r\n DESIRED: True\r\n\r\n```\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/nipy/dipy/issues/comments/69273766","html_url":"https://github.com/nipy/dipy/issues/354#issuecomment-69273766","issue_url":"https://api.github.com/repos/nipy/dipy/issues/354","id":69273766,"user":{"login":"yarikoptic","id":39889,"avatar_url":"https://avatars.githubusercontent.com/u/39889?v=3","gravatar_id":"","url":"https://api.github.com/users/yarikoptic","html_url":"https://github.com/yarikoptic","followers_url":"https://api.github.com/users/yarikoptic/followers","following_url":"https://api.github.com/users/yarikoptic/following{/other_user}","gists_url":"https://api.github.com/users/yarikoptic/gists{/gist_id}","starred_url":"https://api.github.com/users/yarikoptic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yarikoptic/subscriptions","organizations_url":"https://api.github.com/users/yarikoptic/orgs","repos_url":"https://api.github.com/users/yarikoptic/repos","events_url":"https://api.github.com/users/yarikoptic/events{/privacy}","received_events_url":"https://api.github.com/users/yarikoptic/received_events","type":"User","site_admin":false},"created_at":"2015-01-09T00:11:21Z","updated_at":"2015-01-09T00:11:21Z","body":"nd_build doesn't generate ;)  nd_adddist or nd_adddistall do.  What is your base system? is that the NeuroDebian VM -- then I could try replicating"}}