{"action":"created","issue":{"url":"https://api.github.com/repos/glennhickey/progressiveCactus/issues/43","labels_url":"https://api.github.com/repos/glennhickey/progressiveCactus/issues/43/labels{/name}","comments_url":"https://api.github.com/repos/glennhickey/progressiveCactus/issues/43/comments","events_url":"https://api.github.com/repos/glennhickey/progressiveCactus/issues/43/events","html_url":"https://github.com/glennhickey/progressiveCactus/issues/43","id":107733276,"number":43,"title":"git submodule update --init","user":{"login":"rlbc","id":7551070,"avatar_url":"https://avatars.githubusercontent.com/u/7551070?v=3","gravatar_id":"","url":"https://api.github.com/users/rlbc","html_url":"https://github.com/rlbc","followers_url":"https://api.github.com/users/rlbc/followers","following_url":"https://api.github.com/users/rlbc/following{/other_user}","gists_url":"https://api.github.com/users/rlbc/gists{/gist_id}","starred_url":"https://api.github.com/users/rlbc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rlbc/subscriptions","organizations_url":"https://api.github.com/users/rlbc/orgs","repos_url":"https://api.github.com/users/rlbc/repos","events_url":"https://api.github.com/users/rlbc/events{/privacy}","received_events_url":"https://api.github.com/users/rlbc/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":5,"created_at":"2015-09-22T15:02:09Z","updated_at":"2015-09-24T02:01:49Z","closed_at":null,"body":"I'm having a problem installing progressiveCactus. When it's time to pass the \"git submodule update --init\" command, an error occur (error 403). The error is copied in this message.\r\n\r\nAny help would be appreciated...\r\nThanks!\r\n\r\n```\r\nSubmodule 'submodules/biopython' (https://github.com/biopython/biopython.git) registered for path 'submodules/biopython'\r\nSubmodule 'submodules/cactus' (git://github.com/benedictpaten/cactus.git) registered for path 'submodules/cactus'\r\nSubmodule 'submodules/cactus2hal' (git://github.com/glennhickey/cactus2hal.git) registered for path 'submodules/cactus2hal'\r\nSubmodule 'submodules/cactusTestData' (git://github.com/UCSCReconGroup/cactusTestData.git) registered for path 'submodules/cactusTestData'\r\nSubmodule 'submodules/clapack' (git://github.com/UCSCReconGroup/clapack) registered for path 'submodules/clapack'\r\nSubmodule 'submodules/drmaa-python' (git://github.com/UCSCReconGroup/drmaa-python) registered for path 'submodules/drmaa-python'\r\nSubmodule 'submodules/hal' (git://github.com/glennhickey/hal.git) registered for path 'submodules/hal'\r\nSubmodule 'submodules/hdf5' (git://github.com/UCSCReconGroup/hdf5.git) registered for path 'submodules/hdf5'\r\nSubmodule 'submodules/jobTree' (git://github.com/benedictpaten/jobTree.git) registered for path 'submodules/jobTree'\r\nSubmodule 'submodules/kyotocabinet' (git://github.com/UCSCReconGroup/kyotocabinet.git) registered for path 'submodules/kyotocabinet'\r\nSubmodule 'submodules/kyototycoon' (git://github.com/UCSCReconGroup/kyototycoon.git) registered for path 'submodules/kyototycoon'\r\nSubmodule 'submodules/matchingAndOrdering' (git://github.com/benedictpaten/matchingAndOrdering.git) registered for path 'submodules/matchingAndOrdering'\r\nSubmodule 'submodules/networkx' (git://github.com/networkx/networkx.git) registered for path 'submodules/networkx'\r\nSubmodule 'submodules/pbs-drmaa' (git://github.com/UCSCReconGroup/pbs-drmaa) registered for path 'submodules/pbs-drmaa'\r\nSubmodule 'submodules/phast' (git://github.com/UCSCReconGroup/phast) registered for path 'submodules/phast'\r\nSubmodule 'submodules/pinchesAndCacti' (git://github.com/benedictpaten/pinchesAndCacti.git) registered for path 'submodules/pinchesAndCacti'\r\nSubmodule 'submodules/psutil' (git://github.com/tamentis/psutil.git) registered for path 'submodules/psutil'\r\nSubmodule 'submodules/sonLib' (git://github.com/benedictpaten/sonLib.git) registered for path 'submodules/sonLib'\r\nSubmodule 'submodules/tokyocabinet' (git://github.com/UCSCReconGroup/tokyocabinet.git) registered for path 'submodules/tokyocabinet'\r\nSubmodule 'submodules/virtualenv' (git://github.com/pypa/virtualenv.git) registered for path 'submodules/virtualenv'\r\nSubmodule 'submodules/zlib' (git://github.com/madler/zlib) registered for path 'submodules/zlib'\r\nInitialized empty Git repository in /cactus/progressiveCactus/submodules/biopython/.git/\r\nfatal: https://github.com/biopython/biopython.git/info/refs download error - The requested URL returned error: 403\r\nClone of 'https://github.com/biopython/biopython.git' into submodule path 'submodules/biopython' failed\r\n```"},"comment":{"url":"https://api.github.com/repos/glennhickey/progressiveCactus/issues/comments/142782116","html_url":"https://github.com/glennhickey/progressiveCactus/issues/43#issuecomment-142782116","issue_url":"https://api.github.com/repos/glennhickey/progressiveCactus/issues/43","id":142782116,"user":{"login":"ramoserica","id":14814316,"avatar_url":"https://avatars.githubusercontent.com/u/14814316?v=3","gravatar_id":"","url":"https://api.github.com/users/ramoserica","html_url":"https://github.com/ramoserica","followers_url":"https://api.github.com/users/ramoserica/followers","following_url":"https://api.github.com/users/ramoserica/following{/other_user}","gists_url":"https://api.github.com/users/ramoserica/gists{/gist_id}","starred_url":"https://api.github.com/users/ramoserica/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ramoserica/subscriptions","organizations_url":"https://api.github.com/users/ramoserica/orgs","repos_url":"https://api.github.com/users/ramoserica/repos","events_url":"https://api.github.com/users/ramoserica/events{/privacy}","received_events_url":"https://api.github.com/users/ramoserica/received_events","type":"User","site_admin":false},"created_at":"2015-09-24T02:01:49Z","updated_at":"2015-09-24T02:01:49Z","body":"I had the same issue with python version and I cannot remove or update to 2.7 version because some other algorithms are using older libraries of pyhton. Because of this, I have installed to path an alternative python, but the progressiveCactus script keep running with the oldest version. How can I set the correct python link to the script?\r\n"}}