{"action":"created","issue":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/2","labels_url":"https://api.github.com/repos/cjfields/redmine-test/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/cjfields/redmine-test/issues/2/comments","events_url":"https://api.github.com/repos/cjfields/redmine-test/issues/2/events","html_url":"https://github.com/cjfields/redmine-test/issues/2","id":90561187,"number":2,"title":"TCoffee parse score_ascii","user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/bioperl-run","name":"bioperl-run","color":"009999"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Priority%205:%20Low","name":"Priority 5: Low","color":"009933"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Status%201:%20New","name":"Status 1: New","color":"FF6600"},{"url":"https://api.github.com/repos/cjfields/redmine-test/labels/Tracker%202:%20Feature","name":"Tracker 2: Feature","color":"FF6600"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/cjfields/redmine-test/milestones/2","html_url":"https://github.com/cjfields/redmine-test/milestones/unspecified","labels_url":"https://api.github.com/repos/cjfields/redmine-test/milestones/2/labels","id":1178629,"number":2,"title":"unspecified","description":null,"creator":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":0,"state":"open","created_at":"2015-06-24T04:25:53Z","updated_at":"2015-06-24T04:25:53Z","due_on":null,"closed_at":null},"comments":4,"created_at":"2015-06-24T04:25:53Z","updated_at":"2015-06-24T04:25:53Z","closed_at":null,"body":"---\n\n\nAuthor Name: **Albert J. Vilella** (Albert J. Vilella)\nOriginal Redmine Issue: 1514, https://redmine.open-bio.org/issues/1514\nOriginal Date: 2003-09-09\nOriginal Assignee: Albert Vilella\n\n---\n\nHi,\r\n\r\nI'm willing to add the necessary functions in bioperl-run TCoffee.pm in order to\r\nbe able to parse the score_ascii file (see an example in attachment), which is a\r\nreliability plot of the alignment.\r\n\r\nI have browsed the Bio::Seq::SeqWithQuality objects, and I suppose the\r\nreliability info should be contained in this kind of object.\r\n\r\nI would like to receive some feedback about which object is the best to be used.\n\n\n"},"comment":{"url":"https://api.github.com/repos/cjfields/redmine-test/issues/comments/114724017","html_url":"https://github.com/cjfields/redmine-test/issues/2#issuecomment-114724017","issue_url":"https://api.github.com/repos/cjfields/redmine-test/issues/2","id":114724017,"user":{"login":"cjfields","id":49265,"avatar_url":"https://avatars.githubusercontent.com/u/49265?v=3","gravatar_id":"","url":"https://api.github.com/users/cjfields","html_url":"https://github.com/cjfields","followers_url":"https://api.github.com/users/cjfields/followers","following_url":"https://api.github.com/users/cjfields/following{/other_user}","gists_url":"https://api.github.com/users/cjfields/gists{/gist_id}","starred_url":"https://api.github.com/users/cjfields/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cjfields/subscriptions","organizations_url":"https://api.github.com/users/cjfields/orgs","repos_url":"https://api.github.com/users/cjfields/repos","events_url":"https://api.github.com/users/cjfields/events{/privacy}","received_events_url":"https://api.github.com/users/cjfields/received_events","type":"User","site_admin":false},"created_at":"2015-06-24T04:25:53Z","updated_at":"2015-06-24T04:25:53Z","body":"---\n\nOriginal Redmine Comment\nAuthor Name: **Albert J. Vilella** (Albert J. Vilella)\nOriginal Date: 2003-09-09T14:03:47Z\n\n---\n\nCreated an attachment (id=86)\nan example of the score_ascii file\n\nThis score_ascii is not documented in old versions. I use T-Coffee 1.37"}}