{"action":"created","issue":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1052","labels_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1052/labels{/name}","comments_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1052/comments","events_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1052/events","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1052","id":109792504,"number":1052,"title":"Include genome coverage and off-target percentages in bcbio-summary","user":{"login":"lbeltrame","id":25192,"avatar_url":"https://avatars.githubusercontent.com/u/25192?v=3","gravatar_id":"","url":"https://api.github.com/users/lbeltrame","html_url":"https://github.com/lbeltrame","followers_url":"https://api.github.com/users/lbeltrame/followers","following_url":"https://api.github.com/users/lbeltrame/following{/other_user}","gists_url":"https://api.github.com/users/lbeltrame/gists{/gist_id}","starred_url":"https://api.github.com/users/lbeltrame/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbeltrame/subscriptions","organizations_url":"https://api.github.com/users/lbeltrame/orgs","repos_url":"https://api.github.com/users/lbeltrame/repos","events_url":"https://api.github.com/users/lbeltrame/events{/privacy}","received_events_url":"https://api.github.com/users/lbeltrame/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"lpantano","id":1621788,"avatar_url":"https://avatars.githubusercontent.com/u/1621788?v=3","gravatar_id":"","url":"https://api.github.com/users/lpantano","html_url":"https://github.com/lpantano","followers_url":"https://api.github.com/users/lpantano/followers","following_url":"https://api.github.com/users/lpantano/following{/other_user}","gists_url":"https://api.github.com/users/lpantano/gists{/gist_id}","starred_url":"https://api.github.com/users/lpantano/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lpantano/subscriptions","organizations_url":"https://api.github.com/users/lpantano/orgs","repos_url":"https://api.github.com/users/lpantano/repos","events_url":"https://api.github.com/users/lpantano/events{/privacy}","received_events_url":"https://api.github.com/users/lpantano/received_events","type":"User","site_admin":false},"milestone":null,"comments":12,"created_at":"2015-10-05T13:07:58Z","updated_at":"2015-12-03T15:38:04Z","closed_at":null,"body":"As the title says, it would be nice to know at a glance how things stand, considering that these calculations are done already to determine the coverage type."},"comment":{"url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/comments/161678922","html_url":"https://github.com/chapmanb/bcbio-nextgen/issues/1052#issuecomment-161678922","issue_url":"https://api.github.com/repos/chapmanb/bcbio-nextgen/issues/1052","id":161678922,"user":{"login":"lbeltrame","id":25192,"avatar_url":"https://avatars.githubusercontent.com/u/25192?v=3","gravatar_id":"","url":"https://api.github.com/users/lbeltrame","html_url":"https://github.com/lbeltrame","followers_url":"https://api.github.com/users/lbeltrame/followers","following_url":"https://api.github.com/users/lbeltrame/following{/other_user}","gists_url":"https://api.github.com/users/lbeltrame/gists{/gist_id}","starred_url":"https://api.github.com/users/lbeltrame/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbeltrame/subscriptions","organizations_url":"https://api.github.com/users/lbeltrame/orgs","repos_url":"https://api.github.com/users/lbeltrame/repos","events_url":"https://api.github.com/users/lbeltrame/events{/privacy}","received_events_url":"https://api.github.com/users/lbeltrame/received_events","type":"User","site_admin":false},"created_at":"2015-12-03T15:38:04Z","updated_at":"2015-12-03T15:38:04Z","body":"Unfortunately those are patient data so I'm guessing it'll be hard to produce something that can be shared. However what I can tell you is this discrepancy was observed on an amplicon based library (coverage level \"amplicon\")."}}