{"action":"created","issue":{"url":"https://api.github.com/repos/hpcugent/easybuild-easyconfigs/issues/1863","labels_url":"https://api.github.com/repos/hpcugent/easybuild-easyconfigs/issues/1863/labels{/name}","comments_url":"https://api.github.com/repos/hpcugent/easybuild-easyconfigs/issues/1863/comments","events_url":"https://api.github.com/repos/hpcugent/easybuild-easyconfigs/issues/1863/events","html_url":"https://github.com/hpcugent/easybuild-easyconfigs/issues/1863","id":101015644,"number":1863,"title":"tcltk package failure with Bioconductor","user":{"login":"verdurin","id":12435,"avatar_url":"https://avatars.githubusercontent.com/u/12435?v=3","gravatar_id":"","url":"https://api.github.com/users/verdurin","html_url":"https://github.com/verdurin","followers_url":"https://api.github.com/users/verdurin/followers","following_url":"https://api.github.com/users/verdurin/following{/other_user}","gists_url":"https://api.github.com/users/verdurin/gists{/gist_id}","starred_url":"https://api.github.com/users/verdurin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/verdurin/subscriptions","organizations_url":"https://api.github.com/users/verdurin/orgs","repos_url":"https://api.github.com/users/verdurin/repos","events_url":"https://api.github.com/users/verdurin/events{/privacy}","received_events_url":"https://api.github.com/users/verdurin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":11,"created_at":"2015-08-14T13:56:52Z","updated_at":"2015-08-17T14:41:47Z","closed_at":null,"body":"I'm trying to install R-bundle-Bioconductor-3.1-goolf-1.7.20-R-3.2.0.eb on EB 2.2.0.\r\n\r\nThe build is failing because it is unable to find the 'tcltk' package:\r\n\r\n```\r\n== 2015-08-14 09:43:56,016 main.Bundle DEBUG Installing extension widgetTools with default class RPackage (from easybuild.easyblocks.generic.rpackage)\r\n== 2015-08-14 09:43:56,017 main.Bundle DEBUG Installing R package widgetTools version 1.46.0.\r\n== 2015-08-14 09:43:56,017 main.Bundle DEBUG make_cmdline_cmd returns R CMD INSTALL /home/operations/.local/easybuild/sources/r/R-bundle-Bioconductor/extensions/widgetTools_1.46.0.tar.gz   --library=/srv/data/sw/eb/software/R-bundle-Bioconductor/3.1-goolf-1.7.20-R-3.2.0 --no-clean-on-error\r\n== 2015-08-14 09:43:56,017 main.run DEBUG run_cmd: running cmd R CMD INSTALL /home/operations/.local/easybuild/sources/r/R-bundle-Bioconductor/extensions/widgetTools_1.46.0.tar.gz   --library=/srv/data/sw/eb/software/R-bundle-Bioconductor/3.1-goolf-1.7.20-R-3.2.0 --no-clean-on-error (in /home/operations/src/github/easybuild-easyconfigs)\r\n== 2015-08-14 09:43:56,296 main.run DEBUG cmd \"R CMD INSTALL /home/operations/.local/easybuild/sources/r/R-bundle-Bioconductor/extensions/widgetTools_1.46.0.tar.gz   --library=/srv/data/sw/eb/software/R-bundle-Bioconductor/3.1-goolf-1.7.20-R-3.2.0 --no-clean-on-error\" exited with exitcode 1 and output:\r\n* installing *source* package 'widgetTools' ...\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\nWarning: S3 methods 'as.character.tclObj', 'as.character.tclVar', 'as.double.tclObj', 'as.integer.tclObj', 'as.logical.tclObj', 'as.raw.tclObj', 'print.tclObj', '[[.tclArray', '[[<-.tclArray', '$.tclArray', '$<-.tclArray', 'names.tclArray', 'names<-.tclArray', 'length.tclArray', 'length<-.tclArray', 'tclObj.tclVar', 'tclObj<-.tclVar', 'tclvalue.default', 'tclvalue.tclObj', 'tclvalue.tclVar', 'tclvalue<-.default', 'tclvalue<-.tclVar', 'close.tkProgressBar' were declared in NAMESPACE but not found\r\nError : .onLoad failed in loadNamespace() for 'tcltk', details:\r\n  call: fun(libname, pkgname)\r\n  error: Tcl/Tk support is not available on this system\r\nError : package 'tcltk' could not be loaded\r\nERROR: lazy loading failed for package 'widgetTools'\r\n\r\n== 2015-08-14 09:43:56,331 main ERROR cmd \"R CMD INSTALL /home/operations/.local/easybuild/sources/r/R-bundle-Bioconductor/extensions/widgetTools_1.46.0.tar.gz   --library=/srv/data/sw/eb/software/R-bundle-Bioconductor/3.1-goolf-1.7.20-R-3.2.0 --no-clean-on-error\" exited with exitcode 1 and output:\r\n* installing *source* package 'widgetTools' ...\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\nWarning: S3 methods 'as.character.tclObj', 'as.character.tclVar', 'as.double.tclObj', 'as.integer.tclObj', 'as.logical.tclObj', 'as.raw.tclObj', 'print.tclObj', '[[.tclArray', '[[<-.tclArray', '$.tclArray', '$<-.tclArray', 'names.tclArray', 'names<-.tclArray', 'length.tclArray', 'length<-.tclArray', 'tclObj.tclVar', 'tclObj<-.tclVar', 'tclvalue.default', 'tclvalue.tclObj', 'tclvalue.tclVar', 'tclvalue<-.default', 'tclvalue<-.tclVar', 'close.tkProgressBar' were declared in NAMESPACE but not found\r\nError : .onLoad failed in loadNamespace() for 'tcltk', details:\r\n  call: fun(libname, pkgname)\r\n  error: Tcl/Tk support is not available on this system\r\nError : package 'tcltk' could not be loaded\r\nERROR: lazy loading failed for package 'widgetTools'\r\n (at easybuild/tools/run.py:360 in parse_cmd_output)\r\n== 2015-08-14 09:43:56,332 main.easyblock WARNING build failed (first 300 chars): cmd \"R CMD INSTALL /home/operations/.local/easybuild/sources/r/R-bundle-Bioconductor/extensions/widgetTools_1.46.0.tar.gz   --library=/srv/data/sw/eb/software/R-bundle-Bioconductor/3.1-goolf-1.7.20-R-3.2.0 --no-clean-on-error\" exited with exitcode 1 and output:\r\n* installing *source* package 'widgetT\r\n== 2015-08-14 09:43:56,332 main.Bundle INFO Closing log for application name R-bundle-Bioconductor version 3.1\r\n```"},"comment":{"url":"https://api.github.com/repos/hpcugent/easybuild-easyconfigs/issues/comments/131845373","html_url":"https://github.com/hpcugent/easybuild-easyconfigs/issues/1863#issuecomment-131845373","issue_url":"https://api.github.com/repos/hpcugent/easybuild-easyconfigs/issues/1863","id":131845373,"user":{"login":"boegel","id":620876,"avatar_url":"https://avatars.githubusercontent.com/u/620876?v=3","gravatar_id":"","url":"https://api.github.com/users/boegel","html_url":"https://github.com/boegel","followers_url":"https://api.github.com/users/boegel/followers","following_url":"https://api.github.com/users/boegel/following{/other_user}","gists_url":"https://api.github.com/users/boegel/gists{/gist_id}","starred_url":"https://api.github.com/users/boegel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/boegel/subscriptions","organizations_url":"https://api.github.com/users/boegel/orgs","repos_url":"https://api.github.com/users/boegel/repos","events_url":"https://api.github.com/users/boegel/events{/privacy}","received_events_url":"https://api.github.com/users/boegel/received_events","type":"User","site_admin":false},"created_at":"2015-08-17T14:41:47Z","updated_at":"2015-08-17T14:41:47Z","body":"I can't reproduce this issue on CentOS 7.1:\r\n\r\n```\r\n-bash-4.2$ cat /etc/redhat-release \r\nCentOS Linux release 7.1.1503 (Core) \r\n-bash-4.2$ ls $EASYBUILD_PREFIX/software/R/3.2.0-goolf-1.7.20/lib64/R/library/tcltk/libs\r\ntcltk.so\r\n```"}}