{"push_id":788202381,"size":5,"distinct_size":1,"ref":"refs/heads/develop","head":"edb28ef7be67c483880db86ed1404299b0ffde3f","before":"9bf461f23492898197e72eb70afca67229ce260f","commits":[{"sha":"6be8f8b05ea930d7a71a58ab2a5408511c253f10","author":{"email":"bf73c0b197ca700fc64c896493d3033beef9573e@gmail.com","name":"Jon Lund Steffensen"},"message":"fba: Add option --loop-removal to select loop constraints\n\nThis removes the option --no-tfba and replaces it with the option\n--loop-removal which takes as parameter either \"none\", \"tfba\" or \"l1min\".\nThe default is set to \"none\". The \"tfba\" option applies thermodynamic\nconstraints and the \"l1min\" performs an L1 flux minimization after the\nstandard FBA.","distinct":false,"url":"https://api.github.com/repos/zhanglab/psamm/commits/6be8f8b05ea930d7a71a58ab2a5408511c253f10"},{"sha":"2061beb3e3d18853b56cc86b85afc4fdc0632fd1","author":{"email":"bf73c0b197ca700fc64c896493d3033beef9573e@gmail.com","name":"Jon Lund Steffensen"},"message":"docs: Update with change to --no-tfba option","distinct":false,"url":"https://api.github.com/repos/zhanglab/psamm/commits/2061beb3e3d18853b56cc86b85afc4fdc0632fd1"},{"sha":"3906ace8086a6f2f86843118cb7cfc501d526ea8","author":{"email":"bf73c0b197ca700fc64c896493d3033beef9573e@gmail.com","name":"Jon Lund Steffensen"},"message":"robustness: Add --loop-removal option as for fba","distinct":false,"url":"https://api.github.com/repos/zhanglab/psamm/commits/3906ace8086a6f2f86843118cb7cfc501d526ea8"},{"sha":"7d83bb2ae1ca06401e01e69137637c2b32252c5c","author":{"email":"bf73c0b197ca700fc64c896493d3033beef9573e@gmail.com","name":"Jon Lund Steffensen"},"message":"docs: Update robustness docs for --loop-removal","distinct":false,"url":"https://api.github.com/repos/zhanglab/psamm/commits/7d83bb2ae1ca06401e01e69137637c2b32252c5c"},{"sha":"edb28ef7be67c483880db86ed1404299b0ffde3f","author":{"email":"bf73c0b197ca700fc64c896493d3033beef9573e@gmail.com","name":"Jon Lund Steffensen"},"message":"Merge pull request #26 from zhanglab/loop-mode-option\n\nAdd option --loop-mode to select loop constraints","distinct":true,"url":"https://api.github.com/repos/zhanglab/psamm/commits/edb28ef7be67c483880db86ed1404299b0ffde3f"}]}