{"push_id":565088390,"size":113,"distinct_size":31,"ref":"refs/heads/cpp-ome-tiffreader","head":"3c0aabdab8502c9438c842895c26cdd147bc0b8f","before":"ae3aa44b97bd67fcc2c772d5bbb1c47ca5725954","commits":[{"sha":"e8f622630369d2f5b75ceb5840eabf639cf90407","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"TIFF: fix plane count calculation for pyramids with multiple planes\n\nFixes #12617.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/e8f622630369d2f5b75ceb5840eabf639cf90407"},{"sha":"4081dc9bcc7815bdfe9daa92e3e3247365c2d111","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"CellSens: parse physical pixel size and origin data\n\nSee ticket #9805.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/4081dc9bcc7815bdfe9daa92e3e3247365c2d111"},{"sha":"7450d49379afbf5df39ab6bf2962adb729fb0f60","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"CellSens: ignore pyramid resolutions that have a different aspect ratio\n\nThis prevent problems with the bird's eye view when importing into\nOMERO.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/7450d49379afbf5df39ab6bf2962adb729fb0f60"},{"sha":"d6e7f6108f43c045f45175ab2c8300f838d8b5f6","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"CellSens: add physical pixel sizes for each pyramid\n\nThe largest resolution in each pyramid should now have physical pixel\nsizes associated with it.  Lower resolutions in the pyramid will not\nhave physical pixel sizes.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/d6e7f6108f43c045f45175ab2c8300f838d8b5f6"},{"sha":"ef087c8e1ae3fee1f1b895ecf433481e08bfd34c","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"CellSens: fix companion file designation for .ets files","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/ef087c8e1ae3fee1f1b895ecf433481e08bfd34c"},{"sha":"65af87979c6afde115b45748dafee9efd5c786dd","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Make sure the resolution count for a series is never 0","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/65af87979c6afde115b45748dafee9efd5c786dd"},{"sha":"c24f98b38ace57d011354de497eb6cfe809825e8","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix magnification ordering in original metadata","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/c24f98b38ace57d011354de497eb6cfe809825e8"},{"sha":"bc8d81775698eb79a218bc590b1780ac6eb6f0c3","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"One more physical pixel size ordering fix","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/bc8d81775698eb79a218bc590b1780ac6eb6f0c3"},{"sha":"85007c215a729e52013e86bee6b710dd3b229945","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"CellSens: fix physical pixel sizes for single-pyramid datasets","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/85007c215a729e52013e86bee6b710dd3b229945"},{"sha":"ccd6c57b511afe6ad814e12031d4b19b90455993","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix IndexOutOfBounds if no magnification is stored","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/ccd6c57b511afe6ad814e12031d4b19b90455993"},{"sha":"457735a01a1d324c7c6a7bc27f8d3bb42306a853","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"CellSens: fix pyramid resolution counts\n\nThis prevents an exception when there are multiple pyramids, each with\nmultiple resolutions.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/457735a01a1d324c7c6a7bc27f8d3bb42306a853"},{"sha":"ffbbb3b832c56f5a9ba58a99ac57ce8abfd4c279","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix IndexOutOfBounds exceptions when working with multi-pyramid data","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/ffbbb3b832c56f5a9ba58a99ac57ce8abfd4c279"},{"sha":"2364a560a068dd5348a5b06d2ed231c9575a25c1","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix magnification/physical pixel size population for multi-pyramid data\n\nIf magnifications are missing for some pyramids, assume that the maximum\nmagnification applies.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/2364a560a068dd5348a5b06d2ed231c9575a25c1"},{"sha":"cbb35b7ae7c948c164673390ebebc3228a9aaccd","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix tile counts when invalid resolutions are skipped","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/cbb35b7ae7c948c164673390ebebc3228a9aaccd"},{"sha":"209fe5b043e0b6a796162017ccd265d87147598e","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Ignore all thumbnail and mask images","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/209fe5b043e0b6a796162017ccd265d87147598e"},{"sha":"907712a3cc5c38009a7a1ce17bf52e1b8292803b","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix resolution dimensions for CellSens pyramids\n\nThis necessarily adds a bunch of extra metadata parsing, otherwise we\nwouldn't have the correct full resolution dimensions.  The dimensions of\nthe lower level resolutions are not stored anywhere, so we're assuming\nthat dividing by 2 is sufficient.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/907712a3cc5c38009a7a1ce17bf52e1b8292803b"},{"sha":"05044c711dd04cbc96851f8d6872d88ec0810c3c","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix mapping of some original metadata to the data model\n\nImage names, acquisition dates, physical pixel sizes (stored, not\ncalculated), exposure times, and channel names should all be present.\n\nConflicts:\n\n\tcomponents/formats-gpl/src/loci/formats/in/CellSensReader.java","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/05044c711dd04cbc96851f8d6872d88ec0810c3c"},{"sha":"b77e25a2845117855a5ecd2f2ca3df523eab963f","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"One more subresolution size calculation fix","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/b77e25a2845117855a5ecd2f2ca3df523eab963f"},{"sha":"65ccd2b52c49ae37d398a3ef6c9456c8f1cfa10a","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Fix assignment of full resolution dimensions","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/65ccd2b52c49ae37d398a3ef6c9456c8f1cfa10a"},{"sha":"4975849d93ed4082eedce08676ff717a94fba789","author":{"email":"de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","name":"Melissa Linkert"},"message":"Only add tags to the original metadata table if they are in a property set\n\nThis removes many of the extraneous entries in the metadata table, so it\nshould be more readable now.","distinct":false,"url":"https://api.github.com/repos/rleigh-dundee/bioformats/commits/4975849d93ed4082eedce08676ff717a94fba789"}]}