{"action":"opened","issue":{"url":"https://api.github.com/repos/jkitchin/org-ref/issues/58","labels_url":"https://api.github.com/repos/jkitchin/org-ref/issues/58/labels{/name}","comments_url":"https://api.github.com/repos/jkitchin/org-ref/issues/58/comments","events_url":"https://api.github.com/repos/jkitchin/org-ref/issues/58/events","html_url":"https://github.com/jkitchin/org-ref/issues/58","id":109751232,"number":58,"title":"Cannot export citations in org-ref.org to LaTeX","user":{"login":"Spauldo","id":7151836,"avatar_url":"https://avatars.githubusercontent.com/u/7151836?v=3","gravatar_id":"","url":"https://api.github.com/users/Spauldo","html_url":"https://github.com/Spauldo","followers_url":"https://api.github.com/users/Spauldo/followers","following_url":"https://api.github.com/users/Spauldo/following{/other_user}","gists_url":"https://api.github.com/users/Spauldo/gists{/gist_id}","starred_url":"https://api.github.com/users/Spauldo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Spauldo/subscriptions","organizations_url":"https://api.github.com/users/Spauldo/orgs","repos_url":"https://api.github.com/users/Spauldo/repos","events_url":"https://api.github.com/users/Spauldo/events{/privacy}","received_events_url":"https://api.github.com/users/Spauldo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-10-05T08:26:07Z","updated_at":"2015-10-05T08:26:07Z","closed_at":null,"body":"I've installed org-ref via el-get.\r\n\r\nTo test it out, I tried exporting org-ref.org to html and pdf.  The html export seems to work fine.\r\n\r\nThe pdf export, on the other hand, does not.  The citations end up as question marks in the text, and the bibliography section is empty.\r\n\r\nFor some reason I can't attach the tex output or the command output as .txt files here.  I've put them on my server at http://sarnet.mooo.com/org-error/\r\n\r\nMy org-mode setup is below.  I appreciate any advice you can give me.\r\n\r\n;; Org Mode\r\n\r\n(require 'org)\r\n\r\n;; yasnippet support\r\n(add-hook 'org-mode-hook\r\n          (let ((original-command (lookup-key org-mode-map [tab])))\r\n            `(lambda ()\r\n               (setq yas-fallback-behavior\r\n                     '(apply ,original-command))\r\n               (local-set-key [tab] 'yas-expand))))\r\n\r\n;; latex export\r\n(require 'ox-latex)\r\n(unless (boundp 'org-latex-classes)\r\n  (setq org-latex-classes nil))\r\n\r\n(add-to-list 'org-latex-classes\r\n\t     '(\"IEEEtran\"\r\n\t       \"\\\\documentclass[10pt,journal]{IEEEtran}\"\r\n\t       (\"\\\\section{%s}\" . \"\\\\section*{%s}\")\r\n\t       (\"\\\\subsection{%s}\" . \"\\\\subsection*{%s}\")\r\n\t       (\"\\\\subsubsection{%s}\" . \"\\\\subsubsection*{%s}\")))\r\n\r\n;; Syntax highlighting\r\n(require 'htmlize)\r\n(require 'ox-latex)\r\n(setq org-src-fontify-natively t)\r\n(setq org-latex-create-formula-image-program 'imagemagick)\r\n(setq org-latex-listings 'minted)\r\n(add-to-list 'org-latex-packages-alist '(\"\" \"minted\"))\r\n(setq org-latex-pdf-process (list\r\n\t\t\t     \"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f\"\r\n\t\t\t      \"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f\"\r\n\t\t\t      \"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f\"))\r\n\r\n;; org-ref\r\n\r\n(require 'org-ref)\r\n(require 'doi-utils)\r\n(require 'jmax-bibtex)\r\n(require 'pubmed)\r\n(require 'arxiv)\r\n(require 'sci-id)\r\n(require 'helm-bibtex)\r\n\r\n(setq reftex-default-bibliography '(\"~/school/misc/bib/references.bib\"))\r\n\r\n(setq org-ref-bibliography-notes \"~/school/misc/bib/notes.org\"\r\n      org-ref-default-bibliography '(\"~/school/misc/bib/references.bib\")\r\n      org-ref-pdf-directory \"~/school/misc/bib/pdf/\")\r\n\r\n(setq org-latex-pdf-process\r\n      '(\"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f\"\r\n\t\"bibtex %b\"\r\n\t\"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f\"\r\n\t\"pdflatex -interaction nonstopmode -shell-escape -output-directory %o %f\"))\r\n\r\n;; helm-bibtex\r\n\r\n(setq helm-bibtex-bibliography \"~/school/misc/bib/references.bib\")\r\n(setq helm-bibtex-library-path \"~/school/misc/bib/pdf\")\r\n\r\n(setq helm-bibtex-pdf-open-function\r\n      (lambda (fpath)\r\n\t(start-process \"open\" \"*open*\" \"open\" fpath)))\r\n\r\n(setq helm-bibtex-notes-path \"~/school/misc/bib/helm-bibtex-notes\")\r\n\r\n"}}