{"action":"created","issue":{"url":"https://api.github.com/repos/scitran/apps/issues/2","labels_url":"https://api.github.com/repos/scitran/apps/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/scitran/apps/issues/2/comments","events_url":"https://api.github.com/repos/scitran/apps/issues/2/events","html_url":"https://github.com/scitran/apps/issues/2","id":59862400,"number":2,"title":"Directory input not implemented","user":{"login":"kofalt","id":265071,"avatar_url":"https://avatars.githubusercontent.com/u/265071?v=3","gravatar_id":"","url":"https://api.github.com/users/kofalt","html_url":"https://github.com/kofalt","followers_url":"https://api.github.com/users/kofalt/followers","following_url":"https://api.github.com/users/kofalt/following{/other_user}","gists_url":"https://api.github.com/users/kofalt/gists{/gist_id}","starred_url":"https://api.github.com/users/kofalt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kofalt/subscriptions","organizations_url":"https://api.github.com/users/kofalt/orgs","repos_url":"https://api.github.com/users/kofalt/repos","events_url":"https://api.github.com/users/kofalt/events{/privacy}","received_events_url":"https://api.github.com/users/kofalt/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/scitran/apps/labels/question","name":"question","color":"cc317c"}],"state":"closed","locked":false,"assignee":{"login":"kevlarkevin","id":1811977,"avatar_url":"https://avatars.githubusercontent.com/u/1811977?v=3","gravatar_id":"","url":"https://api.github.com/users/kevlarkevin","html_url":"https://github.com/kevlarkevin","followers_url":"https://api.github.com/users/kevlarkevin/followers","following_url":"https://api.github.com/users/kevlarkevin/following{/other_user}","gists_url":"https://api.github.com/users/kevlarkevin/gists{/gist_id}","starred_url":"https://api.github.com/users/kevlarkevin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kevlarkevin/subscriptions","organizations_url":"https://api.github.com/users/kevlarkevin/orgs","repos_url":"https://api.github.com/users/kevlarkevin/repos","events_url":"https://api.github.com/users/kevlarkevin/events{/privacy}","received_events_url":"https://api.github.com/users/kevlarkevin/received_events","type":"User","site_admin":false},"milestone":null,"comments":4,"created_at":"2015-03-04T21:12:06Z","updated_at":"2015-03-05T19:36:50Z","closed_at":"2015-03-05T19:36:50Z","body":"Playing with dicom conversion; what am I doing wrong?\r\n\r\n```\r\n# /script/dcm2nii /input/ /output\r\nlocating input...\r\nloading input...\r\nNo handlers could be found for logger \"scitran.data.data\"\r\nTraceback (most recent call last):\r\n  File \"/script/dcm2nii\", line 38, in <module>\r\n    dcm2nii(args.input, args.outbase)\r\n  File \"/script/dcm2nii\", line 17, in dcm2nii\r\n    ds = scidata.parse(inpath, filetype='dicom', load_data=True, ignore_json=True)\r\n  File \"/usr/local/lib/python2.7/dist-packages/scitran/data/data.py\", line 391, in parse\r\n    raise DataError('directory input not implemented', log_level=logging.ERROR)\r\nscitran.data.data.DataError: directory input not implemented\r\n```\r\n\r\nWhere `/input` is the result of untaring a random demo.flywheel.io instance, holding a folder `4374_2_1_dicoms/` which in turn holds 166 `.dcm` files.\r\n\r\nThis is running in a `scitran/nipa-base` image built this afternoon, with the contents of this repo's `dcm2nii` folder mounted in as `/script`."},"comment":{"url":"https://api.github.com/repos/scitran/apps/issues/comments/77435372","html_url":"https://github.com/scitran/apps/issues/2#issuecomment-77435372","issue_url":"https://api.github.com/repos/scitran/apps/issues/2","id":77435372,"user":{"login":"kofalt","id":265071,"avatar_url":"https://avatars.githubusercontent.com/u/265071?v=3","gravatar_id":"","url":"https://api.github.com/users/kofalt","html_url":"https://github.com/kofalt","followers_url":"https://api.github.com/users/kofalt/followers","following_url":"https://api.github.com/users/kofalt/following{/other_user}","gists_url":"https://api.github.com/users/kofalt/gists{/gist_id}","starred_url":"https://api.github.com/users/kofalt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kofalt/subscriptions","organizations_url":"https://api.github.com/users/kofalt/orgs","repos_url":"https://api.github.com/users/kofalt/repos","events_url":"https://api.github.com/users/kofalt/events{/privacy}","received_events_url":"https://api.github.com/users/kofalt/received_events","type":"User","site_admin":false},"created_at":"2015-03-05T19:36:50Z","updated_at":"2015-03-05T19:36:50Z","body":"Sounds good! That works for me, then."}}