{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/issues/28","labels_url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/issues/28/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/issues/28/comments","events_url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/issues/28/events","html_url":"https://github.com/broadinstitute/hellbender-dataflow/issues/28","id":110131991,"number":28,"title":"Support writing large BAM files in dataflow","user":{"login":"akiezun","id":1993519,"avatar_url":"https://avatars.githubusercontent.com/u/1993519?v=3","gravatar_id":"","url":"https://api.github.com/users/akiezun","html_url":"https://github.com/akiezun","followers_url":"https://api.github.com/users/akiezun/followers","following_url":"https://api.github.com/users/akiezun/following{/other_user}","gists_url":"https://api.github.com/users/akiezun/gists{/gist_id}","starred_url":"https://api.github.com/users/akiezun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/akiezun/subscriptions","organizations_url":"https://api.github.com/users/akiezun/orgs","repos_url":"https://api.github.com/users/akiezun/repos","events_url":"https://api.github.com/users/akiezun/events{/privacy}","received_events_url":"https://api.github.com/users/akiezun/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/labels/Dataflow","name":"Dataflow","color":"ededed"},{"url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/labels/DataflowPreprocessingPipeline","name":"DataflowPreprocessingPipeline","color":"ededed"},{"url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":{"login":"iliat","id":4410767,"avatar_url":"https://avatars.githubusercontent.com/u/4410767?v=3","gravatar_id":"","url":"https://api.github.com/users/iliat","html_url":"https://github.com/iliat","followers_url":"https://api.github.com/users/iliat/followers","following_url":"https://api.github.com/users/iliat/following{/other_user}","gists_url":"https://api.github.com/users/iliat/gists{/gist_id}","starred_url":"https://api.github.com/users/iliat/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/iliat/subscriptions","organizations_url":"https://api.github.com/users/iliat/orgs","repos_url":"https://api.github.com/users/iliat/repos","events_url":"https://api.github.com/users/iliat/events{/privacy}","received_events_url":"https://api.github.com/users/iliat/received_events","type":"User","site_admin":false},"milestone":null,"comments":1,"created_at":"2015-10-07T00:52:03Z","updated_at":"2015-10-07T00:52:04Z","closed_at":null,"body":"_From @droazen on July 8, 2015 17:0_\n\nCurrently tools like `MarkDuplicatesDataflow` use the `SmallBamWriter` to write their output, which makes them unable to handle large BAM outputs. We should switch to using a sharded/large BAM writer, when one materializes.\n\n_Copied from original issue: broadinstitute/hellbender#621_"},"comment":{"url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/issues/comments/146046171","html_url":"https://github.com/broadinstitute/hellbender-dataflow/issues/28#issuecomment-146046171","issue_url":"https://api.github.com/repos/broadinstitute/hellbender-dataflow/issues/28","id":146046171,"user":{"login":"akiezun","id":1993519,"avatar_url":"https://avatars.githubusercontent.com/u/1993519?v=3","gravatar_id":"","url":"https://api.github.com/users/akiezun","html_url":"https://github.com/akiezun","followers_url":"https://api.github.com/users/akiezun/followers","following_url":"https://api.github.com/users/akiezun/following{/other_user}","gists_url":"https://api.github.com/users/akiezun/gists{/gist_id}","starred_url":"https://api.github.com/users/akiezun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/akiezun/subscriptions","organizations_url":"https://api.github.com/users/akiezun/orgs","repos_url":"https://api.github.com/users/akiezun/repos","events_url":"https://api.github.com/users/akiezun/events{/privacy}","received_events_url":"https://api.github.com/users/akiezun/received_events","type":"User","site_admin":false},"created_at":"2015-10-07T00:52:03Z","updated_at":"2015-10-07T00:52:03Z","body":"@iliat are you on this? (as we're assuming you are)"}}