{"action":"created","comment":{"url":"https://api.github.com/repos/ga4gh/schemas/pulls/comments/26399946","id":26399946,"diff_hunk":"@@ -0,0 +1,170 @@\n+@namespace(\"org.ga4gh.models\")\n+/**\n+This protocol defines annotations on GA4GH genomic sequences It includes two\n+types of annotations: continuous and discrete hierarchical.\n+\n+The discrete hierarchical annotations are derived from the Sequence Ontology\n+(SO) and GFF3 work \n+\n+   http://www.sequenceontology.org/gff3.shtml\n+\n+The goal is to be able to store annotations using the GFF3 and SO conceptual\n+model, although there is not necessarly a one-to-one mapping in Avro records\n+to GFF3 records.\n+\n+The minimum requirement is to be able to accurately represent the current\n+state of the art annotation data and the full SO model.  Feature is the\n+core generic record which corresponds to the a GFF3 record.\n+*/\n+protocol SequenceAnnotations {\n+\n+  import idl \"common.avdl\";\n+  import idl \"ontologies.avdl\";\n+\n+  /**\n+  Identifier from a public database\n+  */\n+  record ExternalIdentifier {\n+    /**\n+    The source of the identifier.\n+    (e.g. `Ensembl`)\n+    */\n+    string database;\n+\n+    /**\n+    The ID defined by the external database.\n+    (e.g. `ENST00000000000`)\n+    */\n+    string identifier;\n+\n+    /**\n+    The version of the object or the database\n+    (e.g. `78`)\n+    */\n+    string version;\n+  }\n+\n+  /**\n+  Type defining a collection of attributes associated with various protocol\n+  records.  Each attribute is a name that maps to an array of one or more\n+  values.  To work around Avro restrictions, three fields are define, one for","path":"src/main/resources/avro/sequenceAnnotations.avdl","position":50,"original_position":50,"commit_id":"661581470533a74765e275bc8026845b8ff58910","original_commit_id":"661581470533a74765e275bc8026845b8ff58910","user":{"login":"adamnovak","id":5062495,"avatar_url":"https://avatars.githubusercontent.com/u/5062495?v=3","gravatar_id":"","url":"https://api.github.com/users/adamnovak","html_url":"https://github.com/adamnovak","followers_url":"https://api.github.com/users/adamnovak/followers","following_url":"https://api.github.com/users/adamnovak/following{/other_user}","gists_url":"https://api.github.com/users/adamnovak/gists{/gist_id}","starred_url":"https://api.github.com/users/adamnovak/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adamnovak/subscriptions","organizations_url":"https://api.github.com/users/adamnovak/orgs","repos_url":"https://api.github.com/users/adamnovak/repos","events_url":"https://api.github.com/users/adamnovak/events{/privacy}","received_events_url":"https://api.github.com/users/adamnovak/received_events","type":"User","site_admin":false},"body":"This should say \"defined\", not \"define\".","created_at":"2015-03-13T16:26:12Z","updated_at":"2015-03-13T16:26:12Z","html_url":"https://github.com/ga4gh/schemas/pull/246#discussion_r26399946","pull_request_url":"https://api.github.com/repos/ga4gh/schemas/pulls/246","_links":{"self":{"href":"https://api.github.com/repos/ga4gh/schemas/pulls/comments/26399946"},"html":{"href":"https://github.com/ga4gh/schemas/pull/246#discussion_r26399946"},"pull_request":{"href":"https://api.github.com/repos/ga4gh/schemas/pulls/246"}}},"pull_request":{"url":"https://api.github.com/repos/ga4gh/schemas/pulls/246","id":30488847,"html_url":"https://github.com/ga4gh/schemas/pull/246","diff_url":"https://github.com/ga4gh/schemas/pull/246.diff","patch_url":"https://github.com/ga4gh/schemas/pull/246.patch","issue_url":"https://api.github.com/repos/ga4gh/schemas/issues/246","number":246,"state":"open","locked":false,"title":"proposed sequence annotation API","user":{"login":"diekhans","id":110053,"avatar_url":"https://avatars.githubusercontent.com/u/110053?v=3","gravatar_id":"","url":"https://api.github.com/users/diekhans","html_url":"https://github.com/diekhans","followers_url":"https://api.github.com/users/diekhans/followers","following_url":"https://api.github.com/users/diekhans/following{/other_user}","gists_url":"https://api.github.com/users/diekhans/gists{/gist_id}","starred_url":"https://api.github.com/users/diekhans/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/diekhans/subscriptions","organizations_url":"https://api.github.com/users/diekhans/orgs","repos_url":"https://api.github.com/users/diekhans/repos","events_url":"https://api.github.com/users/diekhans/events{/privacy}","received_events_url":"https://api.github.com/users/diekhans/received_events","type":"User","site_admin":false},"body":"\r\nPull request for sequence annotation from topic branch.\r\n\r\nThis impacts several other task teams, so please examine and vote.\r\n","created_at":"2015-03-04T18:00:28Z","updated_at":"2015-03-13T16:26:12Z","closed_at":null,"merged_at":null,"merge_commit_sha":"e5c72e3a71bf2d0a57f427a90aa38b39485a6bbe","assignee":null,"milestone":null,"commits_url":"https://api.github.com/repos/ga4gh/schemas/pulls/246/commits","review_comments_url":"https://api.github.com/repos/ga4gh/schemas/pulls/246/comments","review_comment_url":"https://api.github.com/repos/ga4gh/schemas/pulls/comments{/number}","comments_url":"https://api.github.com/repos/ga4gh/schemas/issues/246/comments","statuses_url":"https://api.github.com/repos/ga4gh/schemas/statuses/661581470533a74765e275bc8026845b8ff58910","head":{"label":"ga4gh:sequence-annotation","ref":"sequence-annotation","sha":"661581470533a74765e275bc8026845b8ff58910","user":{"login":"ga4gh","id":6921777,"avatar_url":"https://avatars.githubusercontent.com/u/6921777?v=3","gravatar_id":"","url":"https://api.github.com/users/ga4gh","html_url":"https://github.com/ga4gh","followers_url":"https://api.github.com/users/ga4gh/followers","following_url":"https://api.github.com/users/ga4gh/following{/other_user}","gists_url":"https://api.github.com/users/ga4gh/gists{/gist_id}","starred_url":"https://api.github.com/users/ga4gh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ga4gh/subscriptions","organizations_url":"https://api.github.com/users/ga4gh/orgs","repos_url":"https://api.github.com/users/ga4gh/repos","events_url":"https://api.github.com/users/ga4gh/events{/privacy}","received_events_url":"https://api.github.com/users/ga4gh/received_events","type":"Organization","site_admin":false},"repo":{"id":17925227,"name":"schemas","full_name":"ga4gh/schemas","owner":{"login":"ga4gh","id":6921777,"avatar_url":"https://avatars.githubusercontent.com/u/6921777?v=3","gravatar_id":"","url":"https://api.github.com/users/ga4gh","html_url":"https://github.com/ga4gh","followers_url":"https://api.github.com/users/ga4gh/followers","following_url":"https://api.github.com/users/ga4gh/following{/other_user}","gists_url":"https://api.github.com/users/ga4gh/gists{/gist_id}","starred_url":"https://api.github.com/users/ga4gh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ga4gh/subscriptions","organizations_url":"https://api.github.com/users/ga4gh/orgs","repos_url":"https://api.github.com/users/ga4gh/repos","events_url":"https://api.github.com/users/ga4gh/events{/privacy}","received_events_url":"https://api.github.com/users/ga4gh/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/ga4gh/schemas","description":"Work 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