{"action":"created","issue":{"url":"https://api.github.com/repos/IQSS/dataverse/issues/2083","labels_url":"https://api.github.com/repos/IQSS/dataverse/issues/2083/labels{/name}","comments_url":"https://api.github.com/repos/IQSS/dataverse/issues/2083/comments","events_url":"https://api.github.com/repos/IQSS/dataverse/issues/2083/events","html_url":"https://github.com/IQSS/dataverse/issues/2083","id":70501984,"number":2083,"title":"Add Additional Controlled Vocabulary Terms to Life Sciences Metadata for TB Dataverse","user":{"login":"posixeleni","id":5013837,"avatar_url":"https://avatars.githubusercontent.com/u/5013837?v=3","gravatar_id":"","url":"https://api.github.com/users/posixeleni","html_url":"https://github.com/posixeleni","followers_url":"https://api.github.com/users/posixeleni/followers","following_url":"https://api.github.com/users/posixeleni/following{/other_user}","gists_url":"https://api.github.com/users/posixeleni/gists{/gist_id}","starred_url":"https://api.github.com/users/posixeleni/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/posixeleni/subscriptions","organizations_url":"https://api.github.com/users/posixeleni/orgs","repos_url":"https://api.github.com/users/posixeleni/repos","events_url":"https://api.github.com/users/posixeleni/events{/privacy}","received_events_url":"https://api.github.com/users/posixeleni/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/IQSS/dataverse/labels/Component:%20Metadata","name":"Component: Metadata","color":"c7def8"},{"url":"https://api.github.com/repos/IQSS/dataverse/labels/Priority:%20High","name":"Priority: High","color":"e11d21"},{"url":"https://api.github.com/repos/IQSS/dataverse/labels/Status:%20QA","name":"Status: QA","color":"336633"},{"url":"https://api.github.com/repos/IQSS/dataverse/labels/Type:%20Feature","name":"Type: Feature","color":"fef2c0"}],"state":"closed","locked":false,"assignee":{"login":"kcondon","id":4983816,"avatar_url":"https://avatars.githubusercontent.com/u/4983816?v=3","gravatar_id":"","url":"https://api.github.com/users/kcondon","html_url":"https://github.com/kcondon","followers_url":"https://api.github.com/users/kcondon/followers","following_url":"https://api.github.com/users/kcondon/following{/other_user}","gists_url":"https://api.github.com/users/kcondon/gists{/gist_id}","starred_url":"https://api.github.com/users/kcondon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kcondon/subscriptions","organizations_url":"https://api.github.com/users/kcondon/orgs","repos_url":"https://api.github.com/users/kcondon/repos","events_url":"https://api.github.com/users/kcondon/events{/privacy}","received_events_url":"https://api.github.com/users/kcondon/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/IQSS/dataverse/milestones/37","html_url":"https://github.com/IQSS/dataverse/milestones/4.0.1","labels_url":"https://api.github.com/repos/IQSS/dataverse/milestones/37/labels","id":1102260,"number":37,"title":"4.0.1","description":"Thursday May 28 development ends; QA starts Friday May 29.","creator":{"login":"scolapasta","id":4268292,"avatar_url":"https://avatars.githubusercontent.com/u/4268292?v=3","gravatar_id":"","url":"https://api.github.com/users/scolapasta","html_url":"https://github.com/scolapasta","followers_url":"https://api.github.com/users/scolapasta/followers","following_url":"https://api.github.com/users/scolapasta/following{/other_user}","gists_url":"https://api.github.com/users/scolapasta/gists{/gist_id}","starred_url":"https://api.github.com/users/scolapasta/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scolapasta/subscriptions","organizations_url":"https://api.github.com/users/scolapasta/orgs","repos_url":"https://api.github.com/users/scolapasta/repos","events_url":"https://api.github.com/users/scolapasta/events{/privacy}","received_events_url":"https://api.github.com/users/scolapasta/received_events","type":"User","site_admin":false},"open_issues":6,"closed_issues":48,"state":"open","created_at":"2015-05-08T17:54:23Z","updated_at":"2015-06-05T20:19:39Z","due_on":"2015-06-05T04:00:00Z","closed_at":null},"comments":6,"created_at":"2015-04-23T20:11:50Z","updated_at":"2015-06-05T20:19:39Z","closed_at":"2015-06-05T20:19:39Z","body":"Will need to modify the Life Sciences Metadata to add the following controlled vocabulary terms in the following fields, will check if there are any slight variants of these terms that are more standardly used:\r\n\r\n**StudyDesignType**\r\n- Cohort Study Design (ontology: http://bioportal.bioontology.org/ontologies/OCRE/?p=classes&conceptid=http%3A%2F%2Fpurl.org%2Fnet%2FOCRe%2Fstudy_design.owl%23OCRE100078)\r\n- Randomized Controlled Trial (ontology: http://bioportal.bioontology.org/ontologies/EDDA?p=classes&conceptid=http%3A%2F%2Fedda.dbmi.pitt.edu%2Fontologies%2FStudyDesigns.owl%23randomized_controlled_design)\r\n- Nested Case Control Design (ontology: http://bioportal.bioontology.org/ontologies/EDDA/?p=classes&conceptid=http%3A%2F%2Fedda.dbmi.pitt.edu%2Fontologies%2FStudyDesigns.owl%23nested_case_control_design&jump_to_nav=true)\r\n\r\n**StudyFactorType**\r\n- drug susceptibility test\r\n\r\n**Organism** (note: make sure these are in NCBI Taxonomy)\r\n- Mycobacterium tuberculosis\r\n- Mycobacterium canetti\r\n- Mycobacterium africanium (SEK - in the taxonomy it's africanum)\r\n\r\n**Measurement** \r\n- targeted sequencing\r\n- drug susceptibility test\r\n\r\n**technology type**\r\n- culture based drug susceptibility testing, single concentration\r\n- culture based drug susceptibility testing, two concentrations\r\n- culture based drug susceptibility testing, three or more concentrations (minimium inhibitory concentration measurement)\r\n\r\n**technology platform**\r\n- Indirect proportion method on LJ medium\r\n- Indirect proportion method on Middlebrook Agar 7H9\r\n- Indirect proportion method on Middlebrook Agar 7H10\r\n- Indirect proportion method on Middlebrook Agar 7H11\r\n- BD BACTEC MGIT 960\r\n- BD BACTEC MGIT 320\r\n- BD Radiometric BACTEC 460TB\r\n- microplate Alamar Blue (resazurin) colorimetric method\r\n"},"comment":{"url":"https://api.github.com/repos/IQSS/dataverse/issues/comments/109429056","html_url":"https://github.com/IQSS/dataverse/issues/2083#issuecomment-109429056","issue_url":"https://api.github.com/repos/IQSS/dataverse/issues/2083","id":109429056,"user":{"login":"kcondon","id":4983816,"avatar_url":"https://avatars.githubusercontent.com/u/4983816?v=3","gravatar_id":"","url":"https://api.github.com/users/kcondon","html_url":"https://github.com/kcondon","followers_url":"https://api.github.com/users/kcondon/followers","following_url":"https://api.github.com/users/kcondon/following{/other_user}","gists_url":"https://api.github.com/users/kcondon/gists{/gist_id}","starred_url":"https://api.github.com/users/kcondon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kcondon/subscriptions","organizations_url":"https://api.github.com/users/kcondon/orgs","repos_url":"https://api.github.com/users/kcondon/repos","events_url":"https://api.github.com/users/kcondon/events{/privacy}","received_events_url":"https://api.github.com/users/kcondon/received_events","type":"User","site_admin":false},"created_at":"2015-06-05T20:19:39Z","updated_at":"2015-06-05T20:19:39Z","body":"OK, all values correct, closing."}}