{"action":"closed","issue":{"url":"https://api.github.com/repos/a-bioinformatician/BreaKmer/issues/11","labels_url":"https://api.github.com/repos/a-bioinformatician/BreaKmer/issues/11/labels{/name}","comments_url":"https://api.github.com/repos/a-bioinformatician/BreaKmer/issues/11/comments","events_url":"https://api.github.com/repos/a-bioinformatician/BreaKmer/issues/11/events","html_url":"https://github.com/a-bioinformatician/BreaKmer/issues/11","id":109295749,"number":11,"title":"Documentation/Help issues","user":{"login":"dgaston","id":1605762,"avatar_url":"https://avatars.githubusercontent.com/u/1605762?v=3","gravatar_id":"","url":"https://api.github.com/users/dgaston","html_url":"https://github.com/dgaston","followers_url":"https://api.github.com/users/dgaston/followers","following_url":"https://api.github.com/users/dgaston/following{/other_user}","gists_url":"https://api.github.com/users/dgaston/gists{/gist_id}","starred_url":"https://api.github.com/users/dgaston/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dgaston/subscriptions","organizations_url":"https://api.github.com/users/dgaston/orgs","repos_url":"https://api.github.com/users/dgaston/repos","events_url":"https://api.github.com/users/dgaston/events{/privacy}","received_events_url":"https://api.github.com/users/dgaston/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-10-01T13:09:14Z","updated_at":"2015-10-02T17:12:06Z","closed_at":"2015-10-02T17:12:06Z","body":"Current documentation on the web is out of date (no examples include the fncCmd needed as the first argument ie run, start_blat_server, prepare_reference_data).\r\n\r\nHelp output is also out of date. Instead of prepare_reference_data the option provided is prepare_reference_kmers when you run breakmer.py with no arguments.\r\n\r\nSuggestion for enhancement would be to provide a help message if the user executes breakmer.py -h instead of saying it is not one of the appropriate commands to run. This is a standard user behaviour.\r\n\r\n "}}