{"action":"created","issue":{"url":"https://api.github.com/repos/timpx/scripts/issues/34","labels_url":"https://api.github.com/repos/timpx/scripts/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/timpx/scripts/issues/34/comments","events_url":"https://api.github.com/repos/timpx/scripts/issues/34/events","html_url":"https://github.com/timpx/scripts/issues/34","id":75129214,"number":34,"title":"FS v. SUBJECTS_DIR","user":{"login":"maedoc","id":5189886,"avatar_url":"https://avatars.githubusercontent.com/u/5189886?v=3","gravatar_id":"","url":"https://api.github.com/users/maedoc","html_url":"https://github.com/maedoc","followers_url":"https://api.github.com/users/maedoc/followers","following_url":"https://api.github.com/users/maedoc/following{/other_user}","gists_url":"https://api.github.com/users/maedoc/gists{/gist_id}","starred_url":"https://api.github.com/users/maedoc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maedoc/subscriptions","organizations_url":"https://api.github.com/users/maedoc/orgs","repos_url":"https://api.github.com/users/maedoc/repos","events_url":"https://api.github.com/users/maedoc/events{/privacy}","received_events_url":"https://api.github.com/users/maedoc/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-05-11T08:03:01Z","updated_at":"2015-05-11T11:24:21Z","closed_at":"2015-05-11T10:09:32Z","body":"It seems that if these two environment variables do not agree, scripts does not find the results of FreeSurfer.\r\n\r\nWhy have a separate variable? I suggest either remove this from the config and expect user to set via SUBJECTS_DIR before sourcing the FreeSurfer environment or scripts should handle this itself."},"comment":{"url":"https://api.github.com/repos/timpx/scripts/issues/comments/100874393","html_url":"https://github.com/timpx/scripts/issues/34#issuecomment-100874393","issue_url":"https://api.github.com/repos/timpx/scripts/issues/34","id":100874393,"user":{"login":"maedoc","id":5189886,"avatar_url":"https://avatars.githubusercontent.com/u/5189886?v=3","gravatar_id":"","url":"https://api.github.com/users/maedoc","html_url":"https://github.com/maedoc","followers_url":"https://api.github.com/users/maedoc/followers","following_url":"https://api.github.com/users/maedoc/following{/other_user}","gists_url":"https://api.github.com/users/maedoc/gists{/gist_id}","starred_url":"https://api.github.com/users/maedoc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maedoc/subscriptions","organizations_url":"https://api.github.com/users/maedoc/orgs","repos_url":"https://api.github.com/users/maedoc/repos","events_url":"https://api.github.com/users/maedoc/events{/privacy}","received_events_url":"https://api.github.com/users/maedoc/received_events","type":"User","site_admin":false},"created_at":"2015-05-11T11:24:21Z","updated_at":"2015-05-11T11:24:21Z","body":"ah cool; I ran into this because I was generating a config.sh from scratch and forgot to set `SUBJECTS_DIR` to the same value I providing for `FS` in the config.sh.\r\n\r\nthanks"}}