{"action":"opened","issue":{"url":"https://api.github.com/repos/openphacts/queryExpander/issues/4","labels_url":"https://api.github.com/repos/openphacts/queryExpander/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/openphacts/queryExpander/issues/4/comments","events_url":"https://api.github.com/repos/openphacts/queryExpander/issues/4/events","html_url":"https://github.com/openphacts/queryExpander/issues/4","id":77967830,"number":4,"title":"Pattern mismatch warnings during startup","user":{"login":"stain","id":253413,"avatar_url":"https://avatars.githubusercontent.com/u/253413?v=3","gravatar_id":"","url":"https://api.github.com/users/stain","html_url":"https://github.com/stain","followers_url":"https://api.github.com/users/stain/followers","following_url":"https://api.github.com/users/stain/following{/other_user}","gists_url":"https://api.github.com/users/stain/gists{/gist_id}","starred_url":"https://api.github.com/users/stain/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stain/subscriptions","organizations_url":"https://api.github.com/users/stain/orgs","repos_url":"https://api.github.com/users/stain/repos","events_url":"https://api.github.com/users/stain/events{/privacy}","received_events_url":"https://api.github.com/users/stain/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-05-19T07:06:59Z","updated_at":"2015-05-19T07:06:59Z","closed_at":null,"body":"Investigate if these are anything to worry about:\r\n\r\n```\r\nRegistry read in. Now loading DataSources\r\nFullName mismatch for Rf BridgeDb has Rfam while miriam uses RFAM\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000409 was ^RF\\d{5}$ but BridgeBD has RF\\d+\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000194 was ^[A-Z-0-9]+(?<!CHEBI)(\\:)?[A-Za-z0-9+_.%-]+$ but BridgeBD has ^\\w+\\:[A-Za-z0-9-]+$\r\nFullName mismatch for R BridgeDb has RGD while miriam uses Rat Genome Database\r\nFullName mismatch for X BridgeDb has Affy while miriam uses Affymetrix Probeset\r\nFullName mismatch for S BridgeDb has Uniprot-TrEMBL while miriam uses UniProt Knowledgebase\r\nAlternative mismatch for S BridgeDb has UniProtKB/TrEMBL while miriam uses UniProt Knowledgebase\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000005 was ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$ but BridgeBD has ^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?|([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000003 was ^((ENS[A-Z]*[FPTG]\\d{11}(\\.\\d+)?)|(FB\\w{2}\\d{7})|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?)|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$ but BridgeBD has ^ENS[A-Z]*[FPTG]\\d{11}$\r\nFullName mismatch for drugbankTarget BridgeDb has Drugbank Target while miriam uses DrugBank Target v3\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000044 was ^DIP(\\:)?\\-\\d{1,}[ENXS]$ but BridgeBD has ^DIP[\\:\\-]\\d{3}[EN]$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000042 was ^MINT\\-\\d{1,7}$ but BridgeBD has ^MINT\\-\\d{1,5}$\r\nFullName mismatch for Sk BridgeDb has SPIKE while miriam uses SPIKE Map\r\nFullName mismatch for Hac BridgeDb has HGNC Accession number while miriam uses HGNC\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000080 was ^((HGNC|hgnc):)?\\d{1,5}$ but BridgeBD has ^(HGNC:)?\\d{1,5}$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000161 was ^rs\\d+$ but BridgeBD has ^\\d+$\r\nFullName mismatch for H BridgeDb has HGNC while miriam uses HGNC Symbol\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000362 was ^[A-Za-z-0-9_]+(\\@)?$ but BridgeBD has ^[A-Za-z0-9]+\r\nFullName mismatch for A BridgeDb has TAIR while miriam uses TAIR Locus\r\nFullName mismatch for Bg BridgeDb has BioGrid while miriam uses BioGRID\r\nFullName mismatch for Cs BridgeDb has Chemspider while miriam uses ChemSpider\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000027 was ^(WBGene\\d{8}|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$ but BridgeBD has ^WBGene\\d{8}$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000023 was ^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$ but BridgeBD has ^S\\d+$\r\nFullName mismatch for Pid BridgeDb has NCI Pathway Interaction Database while miriam uses NCI Pathway Interaction Database: Pathway\r\nAlternative mismatch for Pid BridgeDb has NCI Pathway Interaction Database while miriam uses NCI Pathway Interaction Database: Pathway\r\nFullName mismatch for G BridgeDb has GenBank while miriam uses Nucleotide Sequence Database\r\nAlternative mismatch for G BridgeDb has GenBank while miriam uses Nucleotide Sequence Database\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000029 was ^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$ but BridgeBD has (\\w\\d{5})|(\\w{2}\\d{6})|(\\w{3}\\d{5})\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000205 was ^\\w+(\\.\\d+)?(\\.\\d+)?$ but BridgeBD has ^\\w+$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000487 was ^\\d+$ but BridgeBD has \\d+\r\nFullName mismatch for Cc BridgeDb has CCDS while miriam uses Consensus CDS\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000377 was ^\\d+$ but BridgeBD has\r\nFullName mismatch for Em BridgeDb has EMBL while miriam uses ENA\r\nAlternative mismatch for Em BridgeDb has European Nucleotide Archive while miriam uses ENA\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000437 was ^\\d+$ but BridgeBD has\r\nFullName mismatch for L BridgeDb has Entrez Gene while miriam uses NCBI Gene\r\nAlternative mismatch for L BridgeDb has Entrez Gene while miriam uses NCBI Gene\r\nFullName mismatch for T BridgeDb has GeneOntology while miriam uses Gene Ontology\r\nFullName mismatch for Pd BridgeDb has PDB while miriam uses Protein Data Bank\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000344 was ^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$ but BridgeBD has ^\\w+\\d+(\\.\\d+)?$\r\nFullName mismatch for unigene BridgeDb has UniGene number while miriam uses UniGene\r\nFullName mismatch for M BridgeDb has MGI while miriam uses Mouse Genome Database\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000039 was ^((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+|(NZ\\_[A-Z]{4}\\d+))(\\.\\d+)?$ but BridgeBD has ^(NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|ZP)_\\d+$\r\nFullName mismatch for Tb BridgeDb has TubercuList while miriam uses MycoBrowser tuberculosis\r\nAlternative mismatch for Tb BridgeDb has TubercuList while miriam uses MycoBrowser tuberculosis\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000216 was ^Rv\\d{4}(A|B|c)?$ but BridgeBD has Rv\\d{4}(A|B|c|\\.\\d)?\r\nFullName mismatch for Gg BridgeDb has Gramene Genes DB while miriam uses Gramene genes\r\nAlternative mismatch for Gg BridgeDb has Gramene Genes while miriam uses Gramene genes\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000182 was ^GR\\:\\d+$ but BridgeBD has GR:\\d+\r\nFullName mismatch for drugbankv4.target BridgeDb has Drugbank Target v4 while miriam uses DrugBank Target v4\r\nFullName mismatch for Wi BridgeDb has Wikipedia while miriam uses Wikipedia (En)\r\nAlternative mismatch for Wi BridgeDb has Wikipedia while miriam uses Wikipedia (En)\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000384 was ^[A-Za-z-0-9_]+$ but BridgeBD has\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000076 was WP\\d{1,5}(\\_r\\d+)?$ but BridgeBD has WP\\d{1,5}(_r\\d+)?\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000027 was ^(WBGene\\d{8}|([A-Z_a-z0-9]+(\\.)?(t)?(\\d+)?([a-z])?))$ but BridgeBD has ^WBGene\\d{8}$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000023 was ^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$ but BridgeBD has ^S\\d+$\r\nFullName mismatch for Pid BridgeDb has NCI Pathway Interaction Database while miriam uses NCI Pathway Interaction Database: Pathway\r\nAlternative mismatch for Pid BridgeDb has NCI Pathway Interaction Database while miriam uses NCI Pathway Interaction Database: Pathway\r\nFullName mismatch for G BridgeDb has GenBank while miriam uses Nucleotide Sequence Database\r\nAlternative mismatch for G BridgeDb has GenBank while miriam uses Nucleotide Sequence Database\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000029 was ^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$ but BridgeBD has (\\w\\d{5})|(\\w{2}\\d{6})|(\\w{3}\\d{5})\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000205 was ^\\w+(\\.\\d+)?(\\.\\d+)?$ but BridgeBD has ^\\w+$\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000487 was ^\\d+$ but BridgeBD has \\d+\r\nFullName mismatch for Cc BridgeDb has CCDS while miriam uses Consensus CDS\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000377 was ^\\d+$ but BridgeBD has\r\nFullName mismatch for Em BridgeDb has EMBL while miriam uses ENA\r\nAlternative mismatch for Em BridgeDb has European Nucleotide Archive while miriam uses ENA\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000437 was ^\\d+$ but BridgeBD has\r\nFullName mismatch for L BridgeDb has Entrez Gene while miriam uses NCBI Gene\r\nAlternative mismatch for L BridgeDb has Entrez Gene while miriam uses NCBI Gene\r\nFullName mismatch for T BridgeDb has GeneOntology while miriam uses Gene Ontology\r\nFullName mismatch for Pd BridgeDb has PDB while miriam uses Protein Data Bank\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000344 was ^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$ but BridgeBD has ^\\w+\\d+(\\.\\d+)?$\r\nFullName mismatch for unigene BridgeDb has UniGene number while miriam uses UniGene\r\nFullName mismatch for M BridgeDb has MGI while miriam uses Mouse Genome Database\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000039 was ^((AC|AP|NC|NG|NM|NP|NR|NT|NW|XM|XP|XR|YP|ZP)_\\d+|(NZ\\_[A-Z]{4}\\d+))(\\.\\d+)?$ but BridgeBD has ^(NC|AC|NG|NT|NW|NZ|NM|NR|XM|XR|NP|AP|XP|ZP)_\\d+$\r\nFullName mismatch for Tb BridgeDb has TubercuList while miriam uses MycoBrowser tuberculosis\r\nAlternative mismatch for Tb BridgeDb has TubercuList while miriam uses MycoBrowser tuberculosis\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000216 was ^Rv\\d{4}(A|B|c)?$ but BridgeBD has Rv\\d{4}(A|B|c|\\.\\d)?\r\nFullName mismatch for Gg BridgeDb has Gramene Genes DB while miriam uses Gramene genes\r\nAlternative mismatch for Gg BridgeDb has Gramene Genes while miriam uses Gramene genes\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000182 was ^GR\\:\\d+$ but BridgeBD has GR:\\d+\r\nFullName mismatch for drugbankv4.target BridgeDb has Drugbank Target v4 while miriam uses DrugBank Target v4\r\nFullName mismatch for Wi BridgeDb has Wikipedia while miriam uses Wikipedia (En)\r\nAlternative mismatch for Wi BridgeDb has Wikipedia while miriam uses Wikipedia (En)\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000384 was ^[A-Za-z-0-9_]+$ but BridgeBD has\r\nRegex patterns do not match for http://www.ebi.ac.uk/miriam/main/collections/MIR:00000076 was WP\\d{1,5}(\\_r\\d+)?$ but BridgeBD has WP\\d{1,5}(_r\\d+)?\r\nFullName mismatch for Z BridgeDb has ZFIN while miriam uses ZFIN Gene\r\n```"}}