{"action":"closed","issue":{"url":"https://api.github.com/repos/renaud/neuroNER/issues/28","labels_url":"https://api.github.com/repos/renaud/neuroNER/issues/28/labels{/name}","comments_url":"https://api.github.com/repos/renaud/neuroNER/issues/28/comments","events_url":"https://api.github.com/repos/renaud/neuroNER/issues/28/events","html_url":"https://github.com/renaud/neuroNER/issues/28","id":98641374,"number":28,"title":"write more tests for neuroNER based on application to BBP/NeuroLEX cell types","user":{"login":"stripathy","id":2458713,"avatar_url":"https://avatars.githubusercontent.com/u/2458713?v=3","gravatar_id":"","url":"https://api.github.com/users/stripathy","html_url":"https://github.com/stripathy","followers_url":"https://api.github.com/users/stripathy/followers","following_url":"https://api.github.com/users/stripathy/following{/other_user}","gists_url":"https://api.github.com/users/stripathy/gists{/gist_id}","starred_url":"https://api.github.com/users/stripathy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stripathy/subscriptions","organizations_url":"https://api.github.com/users/stripathy/orgs","repos_url":"https://api.github.com/users/stripathy/repos","events_url":"https://api.github.com/users/stripathy/events{/privacy}","received_events_url":"https://api.github.com/users/stripathy/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/renaud/neuroNER/labels/high","name":"high","color":"e11d21"}],"state":"closed","locked":false,"assignee":{"login":"stripathy","id":2458713,"avatar_url":"https://avatars.githubusercontent.com/u/2458713?v=3","gravatar_id":"","url":"https://api.github.com/users/stripathy","html_url":"https://github.com/stripathy","followers_url":"https://api.github.com/users/stripathy/followers","following_url":"https://api.github.com/users/stripathy/following{/other_user}","gists_url":"https://api.github.com/users/stripathy/gists{/gist_id}","starred_url":"https://api.github.com/users/stripathy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/stripathy/subscriptions","organizations_url":"https://api.github.com/users/stripathy/orgs","repos_url":"https://api.github.com/users/stripathy/repos","events_url":"https://api.github.com/users/stripathy/events{/privacy}","received_events_url":"https://api.github.com/users/stripathy/received_events","type":"User","site_admin":false},"milestone":null,"comments":2,"created_at":"2015-08-02T22:20:08Z","updated_at":"2015-08-27T19:01:34Z","closed_at":"2015-08-27T19:01:34Z","body":"for example, the test below should be modified to contain the ncbi gene identifier for parvalbumin:\r\n```json\r\n{\r\n    \"input\" : \"parvalbumin basket cell\",\r\n    \"expected\" : {\r\n      \"ProteinProp\" : [ {\r\n        \"begin\" : 0,\r\n        \"end\" : 11,\r\n        \"properties\" : {\r\n          \"ontologyId\" : \"parvalbumin\"\r\n        }\r\n      } ],\r\n      \"Morphology\" : [ {\r\n        \"begin\" : 12,\r\n        \"end\" : 18,\r\n        \"properties\" : {\r\n          \"ontologyId\" : \"HBP_MORPHOLOGY:0000019\"\r\n        }\r\n      } ],\r\n      \"Neuron\" : [ {\r\n        \"begin\" : 0,\r\n        \"end\" : 23\r\n      } ]\r\n    }\r\n  }\r\n```"}}