{"action":"created","issue":{"url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/issues/68","labels_url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/issues/68/labels{/name}","comments_url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/issues/68/comments","events_url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/issues/68/events","html_url":"https://github.com/NationalGenomicsInfrastructure/piper/pull/68","id":113538196,"number":68,"title":"implement compressing vcfs by gatk, and flag to disable","user":{"login":"b97pla","id":886632,"avatar_url":"https://avatars.githubusercontent.com/u/886632?v=3","gravatar_id":"","url":"https://api.github.com/users/b97pla","html_url":"https://github.com/b97pla","followers_url":"https://api.github.com/users/b97pla/followers","following_url":"https://api.github.com/users/b97pla/following{/other_user}","gists_url":"https://api.github.com/users/b97pla/gists{/gist_id}","starred_url":"https://api.github.com/users/b97pla/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/b97pla/subscriptions","organizations_url":"https://api.github.com/users/b97pla/orgs","repos_url":"https://api.github.com/users/b97pla/repos","events_url":"https://api.github.com/users/b97pla/events{/privacy}","received_events_url":"https://api.github.com/users/b97pla/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-10-27T09:18:47Z","updated_at":"2015-10-28T14:32:41Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/pulls/68","html_url":"https://github.com/NationalGenomicsInfrastructure/piper/pull/68","diff_url":"https://github.com/NationalGenomicsInfrastructure/piper/pull/68.diff","patch_url":"https://github.com/NationalGenomicsInfrastructure/piper/pull/68.patch"},"body":"- by default, have GATK gzip-compress vcf files \r\n- compression can be skipped with the `--skip_vcf_compression` flag to the `DNABestPracticeVariantCalling.scala` workflow"},"comment":{"url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/issues/comments/151863425","html_url":"https://github.com/NationalGenomicsInfrastructure/piper/pull/68#issuecomment-151863425","issue_url":"https://api.github.com/repos/NationalGenomicsInfrastructure/piper/issues/68","id":151863425,"user":{"login":"b97pla","id":886632,"avatar_url":"https://avatars.githubusercontent.com/u/886632?v=3","gravatar_id":"","url":"https://api.github.com/users/b97pla","html_url":"https://github.com/b97pla","followers_url":"https://api.github.com/users/b97pla/followers","following_url":"https://api.github.com/users/b97pla/following{/other_user}","gists_url":"https://api.github.com/users/b97pla/gists{/gist_id}","starred_url":"https://api.github.com/users/b97pla/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/b97pla/subscriptions","organizations_url":"https://api.github.com/users/b97pla/orgs","repos_url":"https://api.github.com/users/b97pla/repos","events_url":"https://api.github.com/users/b97pla/events{/privacy}","received_events_url":"https://api.github.com/users/b97pla/received_events","type":"User","site_admin":false},"created_at":"2015-10-28T14:32:41Z","updated_at":"2015-10-28T14:32:41Z","body":"you're probably right, I just wanted to have an option of using the \"old\" behavior. I suggest to merge with this option since it's already implemented"}}