{"action":"created","issue":{"url":"https://api.github.com/repos/openworm/PyOpenWorm/issues/152","labels_url":"https://api.github.com/repos/openworm/PyOpenWorm/issues/152/labels{/name}","comments_url":"https://api.github.com/repos/openworm/PyOpenWorm/issues/152/comments","events_url":"https://api.github.com/repos/openworm/PyOpenWorm/issues/152/events","html_url":"https://github.com/openworm/PyOpenWorm/issues/152","id":89050037,"number":152,"title":"Single page explaining origin/history of CElegansNeuronTables.xls & NeuronConnectFormatted.xlsx, which one we will use & why...","user":{"login":"pgleeson","id":1556687,"avatar_url":"https://avatars.githubusercontent.com/u/1556687?v=3","gravatar_id":"","url":"https://api.github.com/users/pgleeson","html_url":"https://github.com/pgleeson","followers_url":"https://api.github.com/users/pgleeson/followers","following_url":"https://api.github.com/users/pgleeson/following{/other_user}","gists_url":"https://api.github.com/users/pgleeson/gists{/gist_id}","starred_url":"https://api.github.com/users/pgleeson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pgleeson/subscriptions","organizations_url":"https://api.github.com/users/pgleeson/orgs","repos_url":"https://api.github.com/users/pgleeson/repos","events_url":"https://api.github.com/users/pgleeson/events{/privacy}","received_events_url":"https://api.github.com/users/pgleeson/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/openworm/PyOpenWorm/milestones/4","html_url":"https://github.com/openworm/PyOpenWorm/milestones/Flesh%20out%20Evidence%20for%20all%20facts%20in%20PyOpenWorm","labels_url":"https://api.github.com/repos/openworm/PyOpenWorm/milestones/4/labels","id":1173748,"number":4,"title":"Flesh out Evidence for all facts in PyOpenWorm","description":"This got a start in #75, but needs to be turned into a larger enterprise.\r\n\r\nThis milestone would be complete when:\r\n\r\n- [ ] Evidence coverage test: There exists a unit test under DataIntegrityTests that walks through all the facts in the DB, looks up what evidence supports it, and finds at least some evidence for every fact\r\n- [ ] Evidence quality test: There exists a unit test under DataIntegrityTests that checks all evidence in the DB and ensures that it is filled out to a minimum standard of quality (i.e. there is at least a title, there is at least some kind of link to the material)\r\n- [ ] High quality evidence is actually added to the DB to pass the evidence coverage and evidence quality tests\r\n- [ ] Incorporate into a new release of PyOpenWorm","creator":{"login":"slarson","id":1037756,"avatar_url":"https://avatars.githubusercontent.com/u/1037756?v=3","gravatar_id":"","url":"https://api.github.com/users/slarson","html_url":"https://github.com/slarson","followers_url":"https://api.github.com/users/slarson/followers","following_url":"https://api.github.com/users/slarson/following{/other_user}","gists_url":"https://api.github.com/users/slarson/gists{/gist_id}","starred_url":"https://api.github.com/users/slarson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/slarson/subscriptions","organizations_url":"https://api.github.com/users/slarson/orgs","repos_url":"https://api.github.com/users/slarson/repos","events_url":"https://api.github.com/users/slarson/events{/privacy}","received_events_url":"https://api.github.com/users/slarson/received_events","type":"User","site_admin":false},"open_issues":5,"closed_issues":0,"state":"open","created_at":"2015-06-21T00:53:55Z","updated_at":"2015-06-23T02:03:26Z","due_on":"2015-12-31T08:00:00Z","closed_at":null},"comments":1,"created_at":"2015-06-17T15:31:21Z","updated_at":"2015-06-23T03:58:20Z","closed_at":null,"body":"These spreadsheets contain essential information on the \"connectome\" we use but seem to have conflicting information and there are possibly multiple different versions.\r\n\r\nSomewhere there needs to be a record of where they come from, which one will be used and how discrepancies are handled. This is related to a number of other issues:\r\n\r\nhttps://github.com/openworm/PyOpenWorm/issues/10 (data sources)\r\nhttps://github.com/openworm/CElegansNeuroML/issues/28 (which to use in c302)\r\nhttps://github.com/openworm/CElegansNeuroML/issues/27 (update c302)\r\nhttps://github.com/openworm/CElegansNeuroML/pull/23 (pull request comparing xsl files)\r\n"},"comment":{"url":"https://api.github.com/repos/openworm/PyOpenWorm/issues/comments/114346995","html_url":"https://github.com/openworm/PyOpenWorm/issues/152#issuecomment-114346995","issue_url":"https://api.github.com/repos/openworm/PyOpenWorm/issues/152","id":114346995,"user":{"login":"ahrasheed","id":3121716,"avatar_url":"https://avatars.githubusercontent.com/u/3121716?v=3","gravatar_id":"","url":"https://api.github.com/users/ahrasheed","html_url":"https://github.com/ahrasheed","followers_url":"https://api.github.com/users/ahrasheed/followers","following_url":"https://api.github.com/users/ahrasheed/following{/other_user}","gists_url":"https://api.github.com/users/ahrasheed/gists{/gist_id}","starred_url":"https://api.github.com/users/ahrasheed/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ahrasheed/subscriptions","organizations_url":"https://api.github.com/users/ahrasheed/orgs","repos_url":"https://api.github.com/users/ahrasheed/repos","events_url":"https://api.github.com/users/ahrasheed/events{/privacy}","received_events_url":"https://api.github.com/users/ahrasheed/received_events","type":"User","site_admin":false},"created_at":"2015-06-23T03:58:20Z","updated_at":"2015-06-23T03:58:20Z","body":"@travs [NeuronConnectFormatted.xlsx](https://github.com/openworm/CElegansNeuroML/blob/master/NeuronConnectFormatted.xlsx) in CElegansNeuroML and NeuronConnect.xls which has been taken from [here](http://www.wormatlas.org/images/NeuronConnect.xls) are the same files. The only difference is that the names of some neurons have been changed to match those in [CElegansNeuronTables.xls](https://github.com/openworm/CElegansNeuroML/blob/master/CElegansNeuronTables.xls) by removing an extra zero in them (e.g. VA01 has been made VA1) so that c302 can use them correctly to generate .nml files. \r\n\r\nThe commit you are referring to adds a comparison script to compare NeuronConnectFormatted.xls and [CElegansNeuronTables.xls](https://github.com/openworm/CElegansNeuroML/blob/master/CElegansNeuronTables.xls) (which is the primary data source in c302) and write an error log. A similar comparison is also done in the [pull request](https://github.com/openworm/CElegansNeuroML/pull/23) mentioned by @pgleeson. "}}