{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/59","labels_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/59/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/59/comments","events_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/59/events","html_url":"https://github.com/geneontology/annotation_extensions/issues/59","id":115557570,"number":59,"title":"Retrofit multi-species annotations to fit new annotation system","user":{"login":"dosumis","id":112839,"avatar_url":"https://avatars.githubusercontent.com/u/112839?v=3","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/geneontology/annotation_extensions/milestones/2","html_url":"https://github.com/geneontology/annotation_extensions/milestones/Making%20multi%20organism%20annotation%20a%20reality","labels_url":"https://api.github.com/repos/geneontology/annotation_extensions/milestones/2/labels","id":1398095,"number":2,"title":"Making multi organism annotation a reality","description":"","creator":{"login":"dosumis","id":112839,"avatar_url":"https://avatars.githubusercontent.com/u/112839?v=3","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":0,"state":"open","created_at":"2015-11-06T17:32:59Z","updated_at":"2015-11-06T18:07:40Z","due_on":"2016-01-31T00:00:00Z","closed_at":null},"comments":1,"created_at":"2015-11-06T18:07:40Z","updated_at":"2015-11-06T18:08:53Z","closed_at":null,"body":"Retrofitting all use of 'host cell X' terms is required in order to obsolete these terms as part of re-arrangement of the extracellular component branch. This requires a mapping between all host cell X terms regular CC terms; a default retrofit spec for all combinations of organism where relationship is always the same (e.g. virus -> anything else); a default retrofit for where only one taxon is mentioned in the existing annotation (use 'host organism' from PCO).\r\n\r\nRetrofitting other multi-species annotations (some CC and all BP) is not essential, but we should at least provide a guide.\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/comments/154488632","html_url":"https://github.com/geneontology/annotation_extensions/issues/59#issuecomment-154488632","issue_url":"https://api.github.com/repos/geneontology/annotation_extensions/issues/59","id":154488632,"user":{"login":"dosumis","id":112839,"avatar_url":"https://avatars.githubusercontent.com/u/112839?v=3","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"created_at":"2015-11-06T18:08:53Z","updated_at":"2015-11-06T18:08:53Z","body":"This can be done in phases.  We can freeze addition of new terms to 'host cell X' branch while retrofit is underway.  Only obsolete after."}}