{"action":"created","issue":{"url":"https://api.github.com/repos/biocore/qiita/issues/1396","labels_url":"https://api.github.com/repos/biocore/qiita/issues/1396/labels{/name}","comments_url":"https://api.github.com/repos/biocore/qiita/issues/1396/comments","events_url":"https://api.github.com/repos/biocore/qiita/issues/1396/events","html_url":"https://github.com/biocore/qiita/issues/1396","id":96898702,"number":1396,"title":"sample template downloads with the study id prepended","user":{"login":"JWDebelius","id":5534846,"avatar_url":"https://avatars.githubusercontent.com/u/5534846?v=3","gravatar_id":"","url":"https://api.github.com/users/JWDebelius","html_url":"https://github.com/JWDebelius","followers_url":"https://api.github.com/users/JWDebelius/followers","following_url":"https://api.github.com/users/JWDebelius/following{/other_user}","gists_url":"https://api.github.com/users/JWDebelius/gists{/gist_id}","starred_url":"https://api.github.com/users/JWDebelius/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JWDebelius/subscriptions","organizations_url":"https://api.github.com/users/JWDebelius/orgs","repos_url":"https://api.github.com/users/JWDebelius/repos","events_url":"https://api.github.com/users/JWDebelius/events{/privacy}","received_events_url":"https://api.github.com/users/JWDebelius/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/biocore/qiita/labels/group%20input","name":"group input","color":"eb6420"}],"state":"open","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/biocore/qiita/milestones/10","html_url":"https://github.com/biocore/qiita/milestones/Alpha%200.3","labels_url":"https://api.github.com/repos/biocore/qiita/milestones/10/labels","id":1093698,"number":10,"title":"Alpha 0.3","description":"","creator":{"login":"josenavas","id":2501478,"avatar_url":"https://avatars.githubusercontent.com/u/2501478?v=3","gravatar_id":"","url":"https://api.github.com/users/josenavas","html_url":"https://github.com/josenavas","followers_url":"https://api.github.com/users/josenavas/followers","following_url":"https://api.github.com/users/josenavas/following{/other_user}","gists_url":"https://api.github.com/users/josenavas/gists{/gist_id}","starred_url":"https://api.github.com/users/josenavas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/josenavas/subscriptions","organizations_url":"https://api.github.com/users/josenavas/orgs","repos_url":"https://api.github.com/users/josenavas/repos","events_url":"https://api.github.com/users/josenavas/events{/privacy}","received_events_url":"https://api.github.com/users/josenavas/received_events","type":"User","site_admin":false},"open_issues":122,"closed_issues":4,"state":"open","created_at":"2015-05-02T23:05:42Z","updated_at":"2015-08-26T20:19:15Z","due_on":null,"closed_at":null},"comments":6,"created_at":"2015-07-23T20:28:50Z","updated_at":"2015-08-27T03:00:49Z","closed_at":null,"body":"Adding the study id to the sample id (as noted above). <br> Which may or may not be challenging for users, collaborators, and people who don't use pandas to update/build their metadata. ...Excel users can get around it, but they probably won't like it. If I were primarily using Excel, I would not like it. (I find it challenging, but can work around it).\r\n"},"comment":{"url":"https://api.github.com/repos/biocore/qiita/issues/comments/135264275","html_url":"https://github.com/biocore/qiita/issues/1396#issuecomment-135264275","issue_url":"https://api.github.com/repos/biocore/qiita/issues/1396","id":135264275,"user":{"login":"rob-knight","id":2014505,"avatar_url":"https://avatars.githubusercontent.com/u/2014505?v=3","gravatar_id":"","url":"https://api.github.com/users/rob-knight","html_url":"https://github.com/rob-knight","followers_url":"https://api.github.com/users/rob-knight/followers","following_url":"https://api.github.com/users/rob-knight/following{/other_user}","gists_url":"https://api.github.com/users/rob-knight/gists{/gist_id}","starred_url":"https://api.github.com/users/rob-knight/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rob-knight/subscriptions","organizations_url":"https://api.github.com/users/rob-knight/orgs","repos_url":"https://api.github.com/users/rob-knight/repos","events_url":"https://api.github.com/users/rob-knight/events{/privacy}","received_events_url":"https://api.github.com/users/rob-knight/received_events","type":"User","site_admin":false},"created_at":"2015-08-27T03:00:49Z","updated_at":"2015-08-27T03:00:49Z","body":"I think for meta-analysis the study id should be included; for samples all\nfrom one study, the user should have option to suppress the study id for\ndownload. Altering metadata should presumably be handled on a per-study\nbasis and therefore being able to do it with new data that has the original\nids associated (not necessarily the full spreadsheet, maybe just a new\ncolumn or two) would be extremely helpful.\n\nOn Aug 26, 2015, at 3:53 PM, J W Debelius <notifications@github.com> wrote:\n\nThat still puts the work on the user to round trip, twice.\n\nI'd argue that by default, data should be downloaded without the study id.\nYou've made what feels like a major change to the column, and this alters\nthe feel of the data in a way that's very different than standardizing\nmissing fields or boolean values.\n\nIt seems like it should be trivial on your end to just do regex before\ndownload and have the template come down basically the same way it went up.\n\nOn Wed, Aug 26, 2015 at 3:44 PM Jose Navas <notifications@github.com> wrote:\n\n> I would like to have the input from the other devs here, but my suggestion\n> will be to have a checkbox that allows you to download the data w/o the\n> study id, and de-activated by default.\n>\n> Note, if you have a new mapping file, you can directly \"update\" the one in\n> Qiita w/o needing to match the names, it will prepend the study_id\n> automatically. You can then upload the new mapping file, so you don't have\n> to actually merge that. You should be able to upload a sample template\nwith\n> only the new columns, and the system will do the sample name matching for\n> you. I think this is easier than you downloading the template and doing\nthe\n> merge by yourself, right?\n>\n> —\n> Reply to this email directly or view it on GitHub\n> <https://github.com/biocore/qiita/issues/1396#issuecomment-135198256>.\n>\n\n—\nReply to this email directly or view it on GitHub\n<https://github.com/biocore/qiita/issues/1396#issuecomment-135199566>.\n"}}