{"action":"created","issue":{"url":"https://api.github.com/repos/goyalsid/phageParser/issues/46","labels_url":"https://api.github.com/repos/goyalsid/phageParser/issues/46/labels{/name}","comments_url":"https://api.github.com/repos/goyalsid/phageParser/issues/46/comments","events_url":"https://api.github.com/repos/goyalsid/phageParser/issues/46/events","html_url":"https://github.com/goyalsid/phageParser/issues/46","id":86663080,"number":46,"title":"Perl error when running cas_in_gb_v2.p1","user":{"login":"mbonsma","id":5651370,"avatar_url":"https://avatars.githubusercontent.com/u/5651370?v=3","gravatar_id":"","url":"https://api.github.com/users/mbonsma","html_url":"https://github.com/mbonsma","followers_url":"https://api.github.com/users/mbonsma/followers","following_url":"https://api.github.com/users/mbonsma/following{/other_user}","gists_url":"https://api.github.com/users/mbonsma/gists{/gist_id}","starred_url":"https://api.github.com/users/mbonsma/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mbonsma/subscriptions","organizations_url":"https://api.github.com/users/mbonsma/orgs","repos_url":"https://api.github.com/users/mbonsma/repos","events_url":"https://api.github.com/users/mbonsma/events{/privacy}","received_events_url":"https://api.github.com/users/mbonsma/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-06-09T16:49:26Z","updated_at":"2015-06-10T08:35:09Z","closed_at":null,"body":"The script `cas_in_gb_v2.pl` works without error on the file `Genbank_example.txt`, but when I ran `perl cas_in_gb_v2.pl \"out_all_cleaned.gb\" > output.txt` on a much larger file with ~1300 organisms, I got the error:\r\n```\r\npanic: sv_setpvn called with negative strlen at cas_in_gb_v2.pl line 22.\r\n```\r\n\r\nThe files should be the same format-wise; the only difference is that the large file has no actual DNA data in it and it's much bigger. (When I ran it on a small subset of the large file, it works fine.)\r\n\r\n@daisieh and @JJ, I couldn't assign either of you to the issue for some reason, but do either of you have any ideas as to what could be going on?"},"comment":{"url":"https://api.github.com/repos/goyalsid/phageParser/issues/comments/110653251","html_url":"https://github.com/goyalsid/phageParser/issues/46#issuecomment-110653251","issue_url":"https://api.github.com/repos/goyalsid/phageParser/issues/46","id":110653251,"user":{"login":"JJ","id":500,"avatar_url":"https://avatars.githubusercontent.com/u/500?v=3","gravatar_id":"","url":"https://api.github.com/users/JJ","html_url":"https://github.com/JJ","followers_url":"https://api.github.com/users/JJ/followers","following_url":"https://api.github.com/users/JJ/following{/other_user}","gists_url":"https://api.github.com/users/JJ/gists{/gist_id}","starred_url":"https://api.github.com/users/JJ/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JJ/subscriptions","organizations_url":"https://api.github.com/users/JJ/orgs","repos_url":"https://api.github.com/users/JJ/repos","events_url":"https://api.github.com/users/JJ/events{/privacy}","received_events_url":"https://api.github.com/users/JJ/received_events","type":"User","site_admin":false},"created_at":"2015-06-10T08:35:09Z","updated_at":"2015-06-10T08:35:09Z","body":"It's most probably a size issue.\n\nYou can upload big files to GitHub is you create a tag and do a Release.\nBut just upload it to Dropbox or Google Drive so that I can use it as an\nexample.\n"}}