{"action":"created","issue":{"url":"https://api.github.com/repos/compomics/searchgui/issues/69","labels_url":"https://api.github.com/repos/compomics/searchgui/issues/69/labels{/name}","comments_url":"https://api.github.com/repos/compomics/searchgui/issues/69/comments","events_url":"https://api.github.com/repos/compomics/searchgui/issues/69/events","html_url":"https://github.com/compomics/searchgui/issues/69","id":117659486,"number":69,"title":"PSM report - Isotope Number reported as \"0\" when \"<0\" and \"corrected ppm\"-feature request","user":{"login":"ulriche","id":13509447,"avatar_url":"https://avatars.githubusercontent.com/u/13509447?v=3","gravatar_id":"","url":"https://api.github.com/users/ulriche","html_url":"https://github.com/ulriche","followers_url":"https://api.github.com/users/ulriche/followers","following_url":"https://api.github.com/users/ulriche/following{/other_user}","gists_url":"https://api.github.com/users/ulriche/gists{/gist_id}","starred_url":"https://api.github.com/users/ulriche/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ulriche/subscriptions","organizations_url":"https://api.github.com/users/ulriche/orgs","repos_url":"https://api.github.com/users/ulriche/repos","events_url":"https://api.github.com/users/ulriche/events{/privacy}","received_events_url":"https://api.github.com/users/ulriche/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/compomics/searchgui/labels/enhancement","name":"enhancement","color":"84b6eb"},{"url":"https://api.github.com/repos/compomics/searchgui/labels/question","name":"question","color":"cc317c"}],"state":"open","locked":false,"assignee":{"login":"mvaudel","id":11632644,"avatar_url":"https://avatars.githubusercontent.com/u/11632644?v=3","gravatar_id":"","url":"https://api.github.com/users/mvaudel","html_url":"https://github.com/mvaudel","followers_url":"https://api.github.com/users/mvaudel/followers","following_url":"https://api.github.com/users/mvaudel/following{/other_user}","gists_url":"https://api.github.com/users/mvaudel/gists{/gist_id}","starred_url":"https://api.github.com/users/mvaudel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvaudel/subscriptions","organizations_url":"https://api.github.com/users/mvaudel/orgs","repos_url":"https://api.github.com/users/mvaudel/repos","events_url":"https://api.github.com/users/mvaudel/events{/privacy}","received_events_url":"https://api.github.com/users/mvaudel/received_events","type":"User","site_admin":false},"milestone":null,"comments":21,"created_at":"2015-11-18T19:17:49Z","updated_at":"2015-12-29T00:34:00Z","closed_at":null,"body":"Hey PeptideShaker Team,\r\n\r\nis it possible that the Isotope Number \"0\" is reported when it is actually \"<0\", e.g. \"-1\"? at least in my MSGF+ results it looks this way.\r\n\r\nAnd regarding the \"precurser m/z error [ppm]\": is it possible to add an \"isotope corrected\" column to account for the isotope offset? otherwise I end up with crazy numbers such as \"156587 ppm\".\r\n\r\nthanks in advance and all the best\r\nu\r\n"},"comment":{"url":"https://api.github.com/repos/compomics/searchgui/issues/comments/167684473","html_url":"https://github.com/compomics/searchgui/issues/69#issuecomment-167684473","issue_url":"https://api.github.com/repos/compomics/searchgui/issues/69","id":167684473,"user":{"login":"hbarsnes","id":13151214,"avatar_url":"https://avatars.githubusercontent.com/u/13151214?v=3","gravatar_id":"","url":"https://api.github.com/users/hbarsnes","html_url":"https://github.com/hbarsnes","followers_url":"https://api.github.com/users/hbarsnes/followers","following_url":"https://api.github.com/users/hbarsnes/following{/other_user}","gists_url":"https://api.github.com/users/hbarsnes/gists{/gist_id}","starred_url":"https://api.github.com/users/hbarsnes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hbarsnes/subscriptions","organizations_url":"https://api.github.com/users/hbarsnes/orgs","repos_url":"https://api.github.com/users/hbarsnes/repos","events_url":"https://api.github.com/users/hbarsnes/events{/privacy}","received_events_url":"https://api.github.com/users/hbarsnes/received_events","type":"User","site_admin":false},"created_at":"2015-12-29T00:34:00Z","updated_at":"2015-12-29T00:34:00Z","body":"The isotope range is a general setting as it affects the later processing of the results as well, and hence it not just an advanced parameter for the search itself. (But Marc can provide more details here.)\r\n\r\nRegarding the semi option in X!Tandem, there are actually two semi options in X!Tandem, one for the the \"normal\" search and one for the second pass search. So there is no hiding involved. At least not on our part. ;-)"}}