{"action":"created","issue":{"url":"https://api.github.com/repos/bcgsc/abyss/issues/66","labels_url":"https://api.github.com/repos/bcgsc/abyss/issues/66/labels{/name}","comments_url":"https://api.github.com/repos/bcgsc/abyss/issues/66/comments","events_url":"https://api.github.com/repos/bcgsc/abyss/issues/66/events","html_url":"https://github.com/bcgsc/abyss/issues/66","id":71473140,"number":66,"title":"Abyss crashes on aTRAM step","user":{"login":"daisieh","id":1827728,"avatar_url":"https://avatars.githubusercontent.com/u/1827728?v=3","gravatar_id":"","url":"https://api.github.com/users/daisieh","html_url":"https://github.com/daisieh","followers_url":"https://api.github.com/users/daisieh/followers","following_url":"https://api.github.com/users/daisieh/following{/other_user}","gists_url":"https://api.github.com/users/daisieh/gists{/gist_id}","starred_url":"https://api.github.com/users/daisieh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/daisieh/subscriptions","organizations_url":"https://api.github.com/users/daisieh/orgs","repos_url":"https://api.github.com/users/daisieh/repos","events_url":"https://api.github.com/users/daisieh/events{/privacy}","received_events_url":"https://api.github.com/users/daisieh/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"benvvalk","id":1652775,"avatar_url":"https://avatars.githubusercontent.com/u/1652775?v=3","gravatar_id":"","url":"https://api.github.com/users/benvvalk","html_url":"https://github.com/benvvalk","followers_url":"https://api.github.com/users/benvvalk/followers","following_url":"https://api.github.com/users/benvvalk/following{/other_user}","gists_url":"https://api.github.com/users/benvvalk/gists{/gist_id}","starred_url":"https://api.github.com/users/benvvalk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/benvvalk/subscriptions","organizations_url":"https://api.github.com/users/benvvalk/orgs","repos_url":"https://api.github.com/users/benvvalk/repos","events_url":"https://api.github.com/users/benvvalk/events{/privacy}","received_events_url":"https://api.github.com/users/benvvalk/received_events","type":"User","site_admin":false},"milestone":null,"comments":5,"created_at":"2015-04-28T04:14:45Z","updated_at":"2015-04-30T03:21:37Z","closed_at":"2015-04-30T03:21:37Z","body":"I am not sure what is happening, but when I try to assemble the reads found by aTRAM using this command:\r\n```\r\n\"/usr/local/bin/abyss-pe k=32 name=/Users/daisie/test/testout.1.blast.fasta_temp  in='/Users/daisie/test/testout.1.blast.fasta_1.fasta /Users/daisie/test/testout.1.blast.fasta_2.fasta'\"\r\n```\r\n\r\nit always fails with this error:\r\n```\r\nabyss-scaffold   -k32 -s200 -n10 -g /Users/daisie/test/testout.1.blast.fasta_temp-6.path.dot  /Users/daisie/test/testout.1.blast.fasta_temp-6.dot /Users/daisie/test/testout.1.blast.fasta_temp-6.dist.dot >/Users/daisie/test/testout.1.blast.fasta_temp-6.path\r\nerror: Expected `igraph' and saw end-of-file\r\nmake: *** [/Users/daisie/test/testout.1.blast.fasta_temp-6.path] Error 1\r\nmake: *** Deleting file `/Users/daisie/test/testout.1.blast.fasta_temp-6.path'\r\n```"},"comment":{"url":"https://api.github.com/repos/bcgsc/abyss/issues/comments/97648754","html_url":"https://github.com/bcgsc/abyss/issues/66#issuecomment-97648754","issue_url":"https://api.github.com/repos/bcgsc/abyss/issues/66","id":97648754,"user":{"login":"daisieh","id":1827728,"avatar_url":"https://avatars.githubusercontent.com/u/1827728?v=3","gravatar_id":"","url":"https://api.github.com/users/daisieh","html_url":"https://github.com/daisieh","followers_url":"https://api.github.com/users/daisieh/followers","following_url":"https://api.github.com/users/daisieh/following{/other_user}","gists_url":"https://api.github.com/users/daisieh/gists{/gist_id}","starred_url":"https://api.github.com/users/daisieh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/daisieh/subscriptions","organizations_url":"https://api.github.com/users/daisieh/orgs","repos_url":"https://api.github.com/users/daisieh/repos","events_url":"https://api.github.com/users/daisieh/events{/privacy}","received_events_url":"https://api.github.com/users/daisieh/received_events","type":"User","site_admin":false},"created_at":"2015-04-30T03:21:37Z","updated_at":"2015-04-30T03:21:37Z","body":"I'll talk to Julie about it, but I think this does solve it. Thanks!"}}