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All of the\r\ncases that auto-cleaning was fixing are now fixed through other methods, so\r\nthere's not much use ensuring a \"clean build directory\" any more.\r\n\r\nThis has the benefit of fixing issues like #961 where the downside of long\r\ncompiles outweighs the benefits of a \"let's pretend we started from scratch\"\r\nbuild.\r\n\r\nCloses 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