{"action":"created","issue":{"url":"https://api.github.com/repos/choderalab/FAHMunge/issues/13","labels_url":"https://api.github.com/repos/choderalab/FAHMunge/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/choderalab/FAHMunge/issues/13/comments","events_url":"https://api.github.com/repos/choderalab/FAHMunge/issues/13/events","html_url":"https://github.com/choderalab/FAHMunge/issues/13","id":107992511,"number":13,"title":"Copy over additional data into munged HDF5 trajectory files","user":{"login":"jchodera","id":3656088,"avatar_url":"https://avatars.githubusercontent.com/u/3656088?v=3","gravatar_id":"","url":"https://api.github.com/users/jchodera","html_url":"https://github.com/jchodera","followers_url":"https://api.github.com/users/jchodera/followers","following_url":"https://api.github.com/users/jchodera/following{/other_user}","gists_url":"https://api.github.com/users/jchodera/gists{/gist_id}","starred_url":"https://api.github.com/users/jchodera/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jchodera/subscriptions","organizations_url":"https://api.github.com/users/jchodera/orgs","repos_url":"https://api.github.com/users/jchodera/repos","events_url":"https://api.github.com/users/jchodera/events{/privacy}","received_events_url":"https://api.github.com/users/jchodera/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/choderalab/FAHMunge/labels/bug","name":"bug","color":"fc2929"}],"state":"open","locked":false,"assignee":{"login":"steven-albanese","id":10441641,"avatar_url":"https://avatars.githubusercontent.com/u/10441641?v=3","gravatar_id":"","url":"https://api.github.com/users/steven-albanese","html_url":"https://github.com/steven-albanese","followers_url":"https://api.github.com/users/steven-albanese/followers","following_url":"https://api.github.com/users/steven-albanese/following{/other_user}","gists_url":"https://api.github.com/users/steven-albanese/gists{/gist_id}","starred_url":"https://api.github.com/users/steven-albanese/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/steven-albanese/subscriptions","organizations_url":"https://api.github.com/users/steven-albanese/orgs","repos_url":"https://api.github.com/users/steven-albanese/repos","events_url":"https://api.github.com/users/steven-albanese/events{/privacy}","received_events_url":"https://api.github.com/users/steven-albanese/received_events","type":"User","site_admin":false},"milestone":null,"comments":9,"created_at":"2015-09-23T19:47:07Z","updated_at":"2015-11-19T16:15:34Z","closed_at":null,"body":"The current FAH munging scripts must not be setting the trajectory snapshot time properties when writing frames:\r\nhttps://github.com/choderalab/FAHMunge/blob/master/FAHMunge/fah.py#L146-L191\r\n\r\nIt only seems to write the coordinates, cell lengths, and cell angles. \r\n\r\nThe HDF5 trajectory format also supports writing additional data, like the time:\r\nhttp://mdtraj.org/latest/api/generated/mdtraj.formats.HDF5TrajectoryFile.html#mdtraj.formats.HDF5TrajectoryFile.write\r\n\r\nWe should have time and any additional available frame data written to the HDF5 file."},"comment":{"url":"https://api.github.com/repos/choderalab/FAHMunge/issues/comments/158104596","html_url":"https://github.com/choderalab/FAHMunge/issues/13#issuecomment-158104596","issue_url":"https://api.github.com/repos/choderalab/FAHMunge/issues/13","id":158104596,"user":{"login":"steven-albanese","id":10441641,"avatar_url":"https://avatars.githubusercontent.com/u/10441641?v=3","gravatar_id":"","url":"https://api.github.com/users/steven-albanese","html_url":"https://github.com/steven-albanese","followers_url":"https://api.github.com/users/steven-albanese/followers","following_url":"https://api.github.com/users/steven-albanese/following{/other_user}","gists_url":"https://api.github.com/users/steven-albanese/gists{/gist_id}","starred_url":"https://api.github.com/users/steven-albanese/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/steven-albanese/subscriptions","organizations_url":"https://api.github.com/users/steven-albanese/orgs","repos_url":"https://api.github.com/users/steven-albanese/repos","events_url":"https://api.github.com/users/steven-albanese/events{/privacy}","received_events_url":"https://api.github.com/users/steven-albanese/received_events","type":"User","site_admin":false},"created_at":"2015-11-19T16:15:34Z","updated_at":"2015-11-19T16:15:34Z","body":"Ah I see, I don't think I'll be able to access `time` in the `.xtc` the way I'm trying right now (i.e., per frame). Another commit coming soon and I'll get to work testing it "}}