{"action":"opened","issue":{"url":"https://api.github.com/repos/pennekampster/bemovi/issues/36","labels_url":"https://api.github.com/repos/pennekampster/bemovi/issues/36/labels{/name}","comments_url":"https://api.github.com/repos/pennekampster/bemovi/issues/36/comments","events_url":"https://api.github.com/repos/pennekampster/bemovi/issues/36/events","html_url":"https://github.com/pennekampster/bemovi/issues/36","id":111170319,"number":36,"title":"analysis of .cxd files not working under Linux","user":{"login":"efronhofer","id":10303177,"avatar_url":"https://avatars.githubusercontent.com/u/10303177?v=3","gravatar_id":"","url":"https://api.github.com/users/efronhofer","html_url":"https://github.com/efronhofer","followers_url":"https://api.github.com/users/efronhofer/followers","following_url":"https://api.github.com/users/efronhofer/following{/other_user}","gists_url":"https://api.github.com/users/efronhofer/gists{/gist_id}","starred_url":"https://api.github.com/users/efronhofer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/efronhofer/subscriptions","organizations_url":"https://api.github.com/users/efronhofer/orgs","repos_url":"https://api.github.com/users/efronhofer/repos","events_url":"https://api.github.com/users/efronhofer/events{/privacy}","received_events_url":"https://api.github.com/users/efronhofer/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-10-13T12:32:41Z","updated_at":"2015-10-13T12:32:41Z","closed_at":null,"body":"The analysis of .cxd files is not working out-of-the box under Linux. This problem occurs because in the relevant functions the path to the ImageJ plugin directory (for using the required Bio-formats plugin) is hard coded to \"/Applications/ImageJ\" for all unix systems. However, this specific path is only correct for Mac OS. What we need here is a part of the \"IJ.path\" path (without \"ij.jar\"). Couldn't we use this information to make bemovi also work for .cxd files under Linux? NOTE: This will be really relevant if we want to use the MOSAIC plugin instead of the standalone particle tracker."}}