{"action":"opened","issue":{"url":"https://api.github.com/repos/pcingola/BigDataScript/issues/88","labels_url":"https://api.github.com/repos/pcingola/BigDataScript/issues/88/labels{/name}","comments_url":"https://api.github.com/repos/pcingola/BigDataScript/issues/88/comments","events_url":"https://api.github.com/repos/pcingola/BigDataScript/issues/88/events","html_url":"https://github.com/pcingola/BigDataScript/issues/88","id":65291796,"number":88,"title":"Stuck in \"too many threads running\" loop","user":{"login":"kmhernan","id":1761258,"avatar_url":"https://avatars.githubusercontent.com/u/1761258?v=3","gravatar_id":"","url":"https://api.github.com/users/kmhernan","html_url":"https://github.com/kmhernan","followers_url":"https://api.github.com/users/kmhernan/followers","following_url":"https://api.github.com/users/kmhernan/following{/other_user}","gists_url":"https://api.github.com/users/kmhernan/gists{/gist_id}","starred_url":"https://api.github.com/users/kmhernan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kmhernan/subscriptions","organizations_url":"https://api.github.com/users/kmhernan/orgs","repos_url":"https://api.github.com/users/kmhernan/repos","events_url":"https://api.github.com/users/kmhernan/events{/privacy}","received_events_url":"https://api.github.com/users/kmhernan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-03-30T20:10:03Z","updated_at":"2015-03-30T20:10:03Z","closed_at":null,"body":"I am trying to test a pipeline with 100 samples. I can get everything to work fine with 4 samples. Now, I am having strange issues which I'm not sure how to handle. I seem to get stuck in a loop that keeps printing:\r\n\r\n```\r\n00:48:15.101\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:15.601\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:16.101\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:16.602\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:17.102\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:17.602\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:18.102\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:18.603\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:19.103\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n00:48:19.603\tExecutionerClusterSge 'ClusterSge[26]': INFO: Too many threads running (207). Waiting for some threads to finish.\r\n```\r\n\r\nI have been waiting for quite some time (30 min) and it just keeps printing this. Strangely, no jobs are in queue now or are running. BDS just seems to be hanging. I don't see any other threads running when executing `ps -eFl`. I don't know a good way to reproduce this at the moment, but perhaps you have general thoughts?? "}}