{"action":"created","issue":{"url":"https://api.github.com/repos/bokeh/rbokeh/issues/40","labels_url":"https://api.github.com/repos/bokeh/rbokeh/issues/40/labels{/name}","comments_url":"https://api.github.com/repos/bokeh/rbokeh/issues/40/comments","events_url":"https://api.github.com/repos/bokeh/rbokeh/issues/40/events","html_url":"https://github.com/bokeh/rbokeh/issues/40","id":58821980,"number":40,"title":"Pandoc error when trying to include rbokeh plot in rmarkdown document","user":{"login":"seandavi","id":92435,"avatar_url":"https://avatars.githubusercontent.com/u/92435?v=3","gravatar_id":"","url":"https://api.github.com/users/seandavi","html_url":"https://github.com/seandavi","followers_url":"https://api.github.com/users/seandavi/followers","following_url":"https://api.github.com/users/seandavi/following{/other_user}","gists_url":"https://api.github.com/users/seandavi/gists{/gist_id}","starred_url":"https://api.github.com/users/seandavi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/seandavi/subscriptions","organizations_url":"https://api.github.com/users/seandavi/orgs","repos_url":"https://api.github.com/users/seandavi/repos","events_url":"https://api.github.com/users/seandavi/events{/privacy}","received_events_url":"https://api.github.com/users/seandavi/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":14,"created_at":"2015-02-24T23:11:51Z","updated_at":"2015-02-26T14:55:57Z","closed_at":null,"body":"I have a small block in an Rmarkdown document in which I am trying to include an rbokeh plot.  \r\n\r\n```r\r\n'''{r}\r\nlibrary(rbokeh)\r\np <- figure() %>%\r\n  ly_points(Sepal.Length, Sepal.Width, data = iris,\r\n    color = Species, glyph = Species,\r\n    hover = list(Sepal.Length, Sepal.Width))\r\np\r\n'''\r\n```\r\n\r\nI get this error when I try knitting the document.  On the file system, this file does not exist.  In fact, even the images folder does not exist.\r\n\r\n```r\r\npandoc: Could not find data file /Library/Frameworks/R.framework/Versions/3.2/Resources/library/rbokeh/htmlwidgets/lib/bokehjs/images/ui-bg_flat_75_ffffff_40x100.png\r\nError: pandoc document conversion failed with error 97\r\nExecution halted\r\n```\r\n\r\nAnd sessionInfo():\r\n\r\n```r\r\n> sessionInfo()\r\nR Under development (unstable) (2014-10-24 r66864)\r\nPlatform: x86_64-apple-darwin13.4.0 (64-bit)\r\n\r\nlocale:\r\n[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8\r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices utils     datasets  methods   base\r\n\r\nother attached packages:\r\n[1] rbokeh_0.2           BiocInstaller_1.17.5\r\n\r\nloaded via a namespace (and not attached):\r\n [1] devtools_1.6.1    digest_0.6.4      evaluate_0.5.5    formatR_1.0\r\n [5] grid_3.2.0        hexbin_1.27.0     htmltools_0.2.6   htmlwidgets_0.3.2\r\n [9] httr_0.5          knitr_1.8         lattice_0.20-29   magrittr_1.5\r\n[13] maps_2.3-9        RCurl_1.95-4.3    RJSONIO_1.3-0     stringr_0.6.2\r\n[17] tcltk_3.2.0       tools_3.2.0\r\n```\r\n\r\nAny suggestions?"},"comment":{"url":"https://api.github.com/repos/bokeh/rbokeh/issues/comments/76191514","html_url":"https://github.com/bokeh/rbokeh/issues/40#issuecomment-76191514","issue_url":"https://api.github.com/repos/bokeh/rbokeh/issues/40","id":76191514,"user":{"login":"timelyportfolio","id":837910,"avatar_url":"https://avatars.githubusercontent.com/u/837910?v=3","gravatar_id":"","url":"https://api.github.com/users/timelyportfolio","html_url":"https://github.com/timelyportfolio","followers_url":"https://api.github.com/users/timelyportfolio/followers","following_url":"https://api.github.com/users/timelyportfolio/following{/other_user}","gists_url":"https://api.github.com/users/timelyportfolio/gists{/gist_id}","starred_url":"https://api.github.com/users/timelyportfolio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/timelyportfolio/subscriptions","organizations_url":"https://api.github.com/users/timelyportfolio/orgs","repos_url":"https://api.github.com/users/timelyportfolio/repos","events_url":"https://api.github.com/users/timelyportfolio/events{/privacy}","received_events_url":"https://api.github.com/users/timelyportfolio/received_events","type":"User","site_admin":false},"created_at":"2015-02-26T14:55:57Z","updated_at":"2015-02-26T14:55:57Z","body":"Oh, I should have thought about that.  I'll separate the commits by new line where I made the change and I think it will then show up.\r\n\r\n@bryevdv , thoughts on base64 encoding the svg filter in bokeh.css [lines](https://github.com/bokeh/bokeh/blob/6bff365eb13e4a1288fa273700d40c3420137b9a/bokehjs/src/less/continuum.less#L85-L94)?"}}