{"action":"opened","issue":{"url":"https://api.github.com/repos/sr320/paper-pano-go/issues/17","labels_url":"https://api.github.com/repos/sr320/paper-pano-go/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/sr320/paper-pano-go/issues/17/comments","events_url":"https://api.github.com/repos/sr320/paper-pano-go/issues/17/events","html_url":"https://github.com/sr320/paper-pano-go/issues/17","id":117469429,"number":17,"title":"Perl command","user":{"login":"lafarga13","id":10599417,"avatar_url":"https://avatars.githubusercontent.com/u/10599417?v=3","gravatar_id":"","url":"https://api.github.com/users/lafarga13","html_url":"https://github.com/lafarga13","followers_url":"https://api.github.com/users/lafarga13/followers","following_url":"https://api.github.com/users/lafarga13/following{/other_user}","gists_url":"https://api.github.com/users/lafarga13/gists{/gist_id}","starred_url":"https://api.github.com/users/lafarga13/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lafarga13/subscriptions","organizations_url":"https://api.github.com/users/lafarga13/orgs","repos_url":"https://api.github.com/users/lafarga13/repos","events_url":"https://api.github.com/users/lafarga13/events{/privacy}","received_events_url":"https://api.github.com/users/lafarga13/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-11-17T22:48:10Z","updated_at":"2015-11-17T22:48:10Z","closed_at":null,"body":"Hi Steven \r\nFor the CpG analyses,\r\ncan you let me know the options to run this?\r\nI can't run the perl command in my windows, so I am stock and want to run this analyses by myself... can you help me? or let me know how I can length the sequences without the perl command?\r\n\r\n!perl -e '$col = 2;' -e 'while (<>) { s/\\r?\\n//; @F = split /\\t/, $_; $len = length($F[$col]); print \"$_\\t$len\\n\" } warn \"\\nAdded column with length of column $col for $. lines.\\n\\n\";' \\\r\nanalyses/Geoduck-transcriptome-v2.tab > analyses/Geoduck-transcriptome-v2-len.tab\r\n"}}