{"action":"created","issue":{"url":"https://api.github.com/repos/NESCent/popgenInfo/issues/46","labels_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/46/labels{/name}","comments_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/46/comments","events_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/46/events","html_url":"https://github.com/NESCent/popgenInfo/issues/46","id":75667537,"number":46,"title":"Individual based distances","user":{"login":"zkamvar","id":3639446,"avatar_url":"https://avatars.githubusercontent.com/u/3639446?v=3","gravatar_id":"","url":"https://api.github.com/users/zkamvar","html_url":"https://github.com/zkamvar","followers_url":"https://api.github.com/users/zkamvar/followers","following_url":"https://api.github.com/users/zkamvar/following{/other_user}","gists_url":"https://api.github.com/users/zkamvar/gists{/gist_id}","starred_url":"https://api.github.com/users/zkamvar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/zkamvar/subscriptions","organizations_url":"https://api.github.com/users/zkamvar/orgs","repos_url":"https://api.github.com/users/zkamvar/repos","events_url":"https://api.github.com/users/zkamvar/events{/privacy}","received_events_url":"https://api.github.com/users/zkamvar/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/NESCent/popgenInfo/labels/help%20wanted","name":"help wanted","color":"159818"},{"url":"https://api.github.com/repos/NESCent/popgenInfo/labels/vignette","name":"vignette","color":"006b75"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2015-05-12T16:54:56Z","updated_at":"2015-05-14T16:28:02Z","closed_at":null,"body":"## By marker type:\r\n\r\n- [ ] SNP\r\n- [ ] Sequence\r\n- [ ] Microsatellite\r\n\r\nPlease refer to the issue number when making a pull request.\r\n\r\n## Questions to address:\r\n\r\n- What individual based distances exist?\r\n- What are their assumptions?\r\n- What data types to they require?\r\n- How can you use these distances for analyses?\r\n    - Clustering\r\n    - Mantel Tests\r\n    - Dendrograms\r\n    - etc."},"comment":{"url":"https://api.github.com/repos/NESCent/popgenInfo/issues/comments/102093865","html_url":"https://github.com/NESCent/popgenInfo/issues/46#issuecomment-102093865","issue_url":"https://api.github.com/repos/NESCent/popgenInfo/issues/46","id":102093865,"user":{"login":"zkamvar","id":3639446,"avatar_url":"https://avatars.githubusercontent.com/u/3639446?v=3","gravatar_id":"","url":"https://api.github.com/users/zkamvar","html_url":"https://github.com/zkamvar","followers_url":"https://api.github.com/users/zkamvar/followers","following_url":"https://api.github.com/users/zkamvar/following{/other_user}","gists_url":"https://api.github.com/users/zkamvar/gists{/gist_id}","starred_url":"https://api.github.com/users/zkamvar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/zkamvar/subscriptions","organizations_url":"https://api.github.com/users/zkamvar/orgs","repos_url":"https://api.github.com/users/zkamvar/repos","events_url":"https://api.github.com/users/zkamvar/events{/privacy}","received_events_url":"https://api.github.com/users/zkamvar/received_events","type":"User","site_admin":false},"created_at":"2015-05-14T16:28:02Z","updated_at":"2015-05-14T16:28:02Z","body":"Hi Stéphanie,\r\n\r\nThe questions I wrote here were initial questions that I thought might go well under this topic. I think they should be addressed in any way that feels proper. \r\n\r\nAdditionally: Correct me if I'm wrong, but the Bray Curtis distance for genetic data is the fraction of dissimilar alleles between two samples? If so, the poppr function `diss.dist` calculates this quantity.\r\n\r\nRegarding the user section, I will create a new issue on that where we can discuss."}}