{"action":"created","issue":{"url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/issues/90","labels_url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/issues/90/labels{/name}","comments_url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/issues/90/comments","events_url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/issues/90/events","html_url":"https://github.com/iqbal-lab/Mykrobe-predictor/pull/90","id":113590344,"number":90,"title":"Force resistance predictions if species is not target species. ","user":{"login":"Phelimb","id":629499,"avatar_url":"https://avatars.githubusercontent.com/u/629499?v=3","gravatar_id":"","url":"https://api.github.com/users/Phelimb","html_url":"https://github.com/Phelimb","followers_url":"https://api.github.com/users/Phelimb/followers","following_url":"https://api.github.com/users/Phelimb/following{/other_user}","gists_url":"https://api.github.com/users/Phelimb/gists{/gist_id}","starred_url":"https://api.github.com/users/Phelimb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Phelimb/subscriptions","organizations_url":"https://api.github.com/users/Phelimb/orgs","repos_url":"https://api.github.com/users/Phelimb/repos","events_url":"https://api.github.com/users/Phelimb/events{/privacy}","received_events_url":"https://api.github.com/users/Phelimb/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":21,"created_at":"2015-10-27T14:04:42Z","updated_at":"2015-10-29T21:38:38Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/pulls/90","html_url":"https://github.com/iqbal-lab/Mykrobe-predictor/pull/90","diff_url":"https://github.com/iqbal-lab/Mykrobe-predictor/pull/90.diff","patch_url":"https://github.com/iqbal-lab/Mykrobe-predictor/pull/90.patch"},"body":""},"comment":{"url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/issues/comments/152335738","html_url":"https://github.com/iqbal-lab/Mykrobe-predictor/pull/90#issuecomment-152335738","issue_url":"https://api.github.com/repos/iqbal-lab/Mykrobe-predictor/issues/90","id":152335738,"user":{"login":"iqbal-lab","id":6476513,"avatar_url":"https://avatars.githubusercontent.com/u/6476513?v=3","gravatar_id":"","url":"https://api.github.com/users/iqbal-lab","html_url":"https://github.com/iqbal-lab","followers_url":"https://api.github.com/users/iqbal-lab/followers","following_url":"https://api.github.com/users/iqbal-lab/following{/other_user}","gists_url":"https://api.github.com/users/iqbal-lab/gists{/gist_id}","starred_url":"https://api.github.com/users/iqbal-lab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/iqbal-lab/subscriptions","organizations_url":"https://api.github.com/users/iqbal-lab/orgs","repos_url":"https://api.github.com/users/iqbal-lab/repos","events_url":"https://api.github.com/users/iqbal-lab/events{/privacy}","received_events_url":"https://api.github.com/users/iqbal-lab/received_events","type":"User","site_admin":false},"created_at":"2015-10-29T21:38:38Z","updated_at":"2015-10-29T21:38:38Z","body":"OK, so can you resummarise after splitting samples as follows.\r\n\r\n1. Do not use FN/TN/TP/FP  for samples with contam. Ie remove from der/val/PHE samples with contam. Then report on VME/FP/etc\r\n\r\n2. Are we doing right thing for contam samples\r\n"}}