{"action":"created","issue":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/329","labels_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/329/labels{/name}","comments_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/329/comments","events_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/329/events","html_url":"https://github.com/markovmodel/PyEMMA/issues/329","id":81002659,"number":329,"title":"plot_flux is broken for automatic layout","user":{"login":"marscher","id":170287,"avatar_url":"https://avatars.githubusercontent.com/u/170287?v=3","gravatar_id":"","url":"https://api.github.com/users/marscher","html_url":"https://github.com/marscher","followers_url":"https://api.github.com/users/marscher/followers","following_url":"https://api.github.com/users/marscher/following{/other_user}","gists_url":"https://api.github.com/users/marscher/gists{/gist_id}","starred_url":"https://api.github.com/users/marscher/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marscher/subscriptions","organizations_url":"https://api.github.com/users/marscher/orgs","repos_url":"https://api.github.com/users/marscher/repos","events_url":"https://api.github.com/users/marscher/events{/privacy}","received_events_url":"https://api.github.com/users/marscher/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/markovmodel/PyEMMA/labels/bug","name":"bug","color":"fc2929"}],"state":"closed","locked":false,"assignee":null,"milestone":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/milestones/7","html_url":"https://github.com/markovmodel/PyEMMA/milestones/v1.2.1","labels_url":"https://api.github.com/repos/markovmodel/PyEMMA/milestones/7/labels","id":1067863,"number":7,"title":"v1.2.1","description":"Bugfixes and minor convenience improvements related to v1.2. No major new functionality.","creator":{"login":"franknoe","id":6495810,"avatar_url":"https://avatars.githubusercontent.com/u/6495810?v=3","gravatar_id":"","url":"https://api.github.com/users/franknoe","html_url":"https://github.com/franknoe","followers_url":"https://api.github.com/users/franknoe/followers","following_url":"https://api.github.com/users/franknoe/following{/other_user}","gists_url":"https://api.github.com/users/franknoe/gists{/gist_id}","starred_url":"https://api.github.com/users/franknoe/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/franknoe/subscriptions","organizations_url":"https://api.github.com/users/franknoe/orgs","repos_url":"https://api.github.com/users/franknoe/repos","events_url":"https://api.github.com/users/franknoe/events{/privacy}","received_events_url":"https://api.github.com/users/franknoe/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":9,"state":"open","created_at":"2015-04-14T23:29:40Z","updated_at":"2015-05-28T19:57:28Z","due_on":null,"closed_at":null},"comments":15,"created_at":"2015-05-26T15:03:53Z","updated_at":"2015-05-28T19:57:28Z","closed_at":"2015-05-28T19:57:28Z","body":"I've added a test on marscher/PyEMMA@9cff6ad946 in plots/tests and it fails with:\r\n\r\n    Traceback (most recent call last):\r\n      File \"/home/marscher/workspace/pyemma/pyemma/plots/tests/test_networks.py\", line 40, in test_flux\r\n        plot_flux(r)\r\n      File \"/home/marscher/workspace/pyemma/pyemma/plots/networks.py\", line 393, in plot_flux\r\n        figpadding=figpadding, xticks=True, yticks=False)\r\n      File \"/home/marscher/workspace/pyemma/pyemma/plots/networks.py\", line 104, in plot_network\r\n        self.layout_automatic()\r\n      File \"/home/marscher/workspace/pyemma/pyemma/plots/networks.py\", line 245, in layout_automatic\r\n        self.pos, self.stress = self._find_best_positions(V, g, 10, 25)\r\n      File \"/home/marscher/workspace/pyemma/pyemma/plots/networks.py\", line 212, in _find_best_positions\r\n        best_pos[j,:] = V[j].view.xy\r\n    AttributeError: 'defaultview' object has no attribute 'xy'\r\n\r\n@franknoe since you wrote this, can you please have look?"},"comment":{"url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/comments/106580517","html_url":"https://github.com/markovmodel/PyEMMA/issues/329#issuecomment-106580517","issue_url":"https://api.github.com/repos/markovmodel/PyEMMA/issues/329","id":106580517,"user":{"login":"marscher","id":170287,"avatar_url":"https://avatars.githubusercontent.com/u/170287?v=3","gravatar_id":"","url":"https://api.github.com/users/marscher","html_url":"https://github.com/marscher","followers_url":"https://api.github.com/users/marscher/followers","following_url":"https://api.github.com/users/marscher/following{/other_user}","gists_url":"https://api.github.com/users/marscher/gists{/gist_id}","starred_url":"https://api.github.com/users/marscher/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marscher/subscriptions","organizations_url":"https://api.github.com/users/marscher/orgs","repos_url":"https://api.github.com/users/marscher/repos","events_url":"https://api.github.com/users/marscher/events{/privacy}","received_events_url":"https://api.github.com/users/marscher/received_events","type":"User","site_admin":false},"created_at":"2015-05-28T19:57:27Z","updated_at":"2015-05-28T19:57:27Z","body":"fixed on devel (disabled min-max-scaling, fixed some minor bugs [eg. xy attribute not available in defaultview, restore fontsize of matplotlib])"}}