{"action":"created","issue":{"url":"https://api.github.com/repos/hallamlab/metapathways2/issues/51","labels_url":"https://api.github.com/repos/hallamlab/metapathways2/issues/51/labels{/name}","comments_url":"https://api.github.com/repos/hallamlab/metapathways2/issues/51/comments","events_url":"https://api.github.com/repos/hallamlab/metapathways2/issues/51/events","html_url":"https://github.com/hallamlab/metapathways2/issues/51","id":58168469,"number":51,"title":"Add documentation on how to build CAZy database","user":{"login":"taltman","id":2146012,"avatar_url":"https://avatars.githubusercontent.com/u/2146012?v=3","gravatar_id":"","url":"https://api.github.com/users/taltman","html_url":"https://github.com/taltman","followers_url":"https://api.github.com/users/taltman/followers","following_url":"https://api.github.com/users/taltman/following{/other_user}","gists_url":"https://api.github.com/users/taltman/gists{/gist_id}","starred_url":"https://api.github.com/users/taltman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/taltman/subscriptions","organizations_url":"https://api.github.com/users/taltman/orgs","repos_url":"https://api.github.com/users/taltman/repos","events_url":"https://api.github.com/users/taltman/events{/privacy}","received_events_url":"https://api.github.com/users/taltman/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/hallamlab/metapathways2/labels/enhancement","name":"enhancement","color":"84b6eb"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-02-19T05:07:54Z","updated_at":"2015-02-24T02:55:33Z","closed_at":null,"body":"I contacted the CAZy folks about how to build an annotation database. They recommended using UniProt. One can download the equivalent FASTA file here:\r\n\r\nhttp://www.uniprot.org/uniprot/?query=database:%28type:CAZy%29\r\n\r\nProbably some additional work would be needed if the CAZy identifiers are desired, rather than the UniProt. Looking at the CAZY_hierarchy.txt file bundled with MetaPathways, it seems that a mapping to GenBank GeneIDs is needed, as not every CAZY entry has a mapping to UniProt. I will ask the CAZy folks for a better recommended way of obtaining a FASTA file."},"comment":{"url":"https://api.github.com/repos/hallamlab/metapathways2/issues/comments/75689582","html_url":"https://github.com/hallamlab/metapathways2/issues/51#issuecomment-75689582","issue_url":"https://api.github.com/repos/hallamlab/metapathways2/issues/51","id":75689582,"user":{"login":"nielshanson","id":1212175,"avatar_url":"https://avatars.githubusercontent.com/u/1212175?v=3","gravatar_id":"","url":"https://api.github.com/users/nielshanson","html_url":"https://github.com/nielshanson","followers_url":"https://api.github.com/users/nielshanson/followers","following_url":"https://api.github.com/users/nielshanson/following{/other_user}","gists_url":"https://api.github.com/users/nielshanson/gists{/gist_id}","starred_url":"https://api.github.com/users/nielshanson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nielshanson/subscriptions","organizations_url":"https://api.github.com/users/nielshanson/orgs","repos_url":"https://api.github.com/users/nielshanson/repos","events_url":"https://api.github.com/users/nielshanson/events{/privacy}","received_events_url":"https://api.github.com/users/nielshanson/received_events","type":"User","site_admin":false},"created_at":"2015-02-24T02:55:33Z","updated_at":"2015-02-24T02:55:33Z","body":"Yeah, ask them about it. What we are calling CAZy is the collection of all the GenBank IDs found on http://www.cazy.org/, so it doesn't have any UniProt sequences right now. I guess on the next build I can add the UniProt complement as well using your link above. It shouldn't be too tough if there's a web-based API.\r\n"}}