{"action":"opened","issue":{"url":"https://api.github.com/repos/weizhongli/cdhit/issues/27","labels_url":"https://api.github.com/repos/weizhongli/cdhit/issues/27/labels{/name}","comments_url":"https://api.github.com/repos/weizhongli/cdhit/issues/27/comments","events_url":"https://api.github.com/repos/weizhongli/cdhit/issues/27/events","html_url":"https://github.com/weizhongli/cdhit/issues/27","id":122728249,"number":27,"title":"Segmentation fault problem","user":{"login":"victor0104","id":11535025,"avatar_url":"https://avatars.githubusercontent.com/u/11535025?v=3","gravatar_id":"","url":"https://api.github.com/users/victor0104","html_url":"https://github.com/victor0104","followers_url":"https://api.github.com/users/victor0104/followers","following_url":"https://api.github.com/users/victor0104/following{/other_user}","gists_url":"https://api.github.com/users/victor0104/gists{/gist_id}","starred_url":"https://api.github.com/users/victor0104/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/victor0104/subscriptions","organizations_url":"https://api.github.com/users/victor0104/orgs","repos_url":"https://api.github.com/users/victor0104/repos","events_url":"https://api.github.com/users/victor0104/events{/privacy}","received_events_url":"https://api.github.com/users/victor0104/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-12-17T12:47:24Z","updated_at":"2015-12-17T12:47:24Z","closed_at":null,"body":"Dear all,\r\nI had a error message when i process cd-hit-est-2d(CD-HIT, V4.6 (+OpenMP)) on Ubuntu 14.04.3 LTS(GNU/Linux 3.13.0-55-generic x86_64) ,Here shows below:\r\n\r\nCommand:./cd-hit-est-2d -i ~/vp_4/cdhit/mcvv_genes_edit.fasta -i2 ~/vp_4/vibiro_ref/vvgenesad -c 0.99 -n 8 -o ~/vp_4/cdhit/mcva -T 10 -M 4096\r\n\r\n================================================================\r\n                            Output                              \r\n----------------------------------------------------------------\r\ntotal seq in db1: 4876\r\ntotal seq in db2: 928\r\nlongest and shortest : 504244 and 12\r\nTotal letters: 6792910\r\nSequences have been sorted\r\nlongest and shortest : 13965 and 66\r\nTotal letters: 972456\r\n\r\nApproximated minimal memory consumption:\r\nSequence        : 7M\r\nBuffer          : 10 X 15M = 150M\r\nTable           : 2 X 1M = 2M\r\nMiscellaneous   : 0M\r\nTotal           : 161M\r\n\r\nTable limit with the given memory limit:\r\nMax number of representatives: 0\r\nMax number of word counting entries: 491843170\r\n\r\nSegmentation fault (core dumped)\r\n\r\n================================================================\r\n\r\nAny suggestions on how to resolve this?Thank you\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n"}}