{"action":"opened","issue":{"url":"https://api.github.com/repos/mskcc/facets-suite/issues/6","labels_url":"https://api.github.com/repos/mskcc/facets-suite/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/mskcc/facets-suite/issues/6/comments","events_url":"https://api.github.com/repos/mskcc/facets-suite/issues/6/events","html_url":"https://github.com/mskcc/facets-suite/issues/6","id":110446013,"number":6,"title":"facets gene level calls should not use file name as tumor barcode?","user":{"login":"lordzappo","id":1440762,"avatar_url":"https://avatars.githubusercontent.com/u/1440762?v=3","gravatar_id":"","url":"https://api.github.com/users/lordzappo","html_url":"https://github.com/lordzappo","followers_url":"https://api.github.com/users/lordzappo/followers","following_url":"https://api.github.com/users/lordzappo/following{/other_user}","gists_url":"https://api.github.com/users/lordzappo/gists{/gist_id}","starred_url":"https://api.github.com/users/lordzappo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lordzappo/subscriptions","organizations_url":"https://api.github.com/users/lordzappo/orgs","repos_url":"https://api.github.com/users/lordzappo/repos","events_url":"https://api.github.com/users/lordzappo/events{/privacy}","received_events_url":"https://api.github.com/users/lordzappo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-10-08T13:06:00Z","updated_at":"2015-10-08T13:06:00Z","closed_at":null,"body":"This makes the tests very fragile and people probably don't care about the whole path in the output:\r\n\r\n>head  /ifs/res/pwg/tests/cmo_testdata/facets/expected_outputs/facets                                                         _gene_level_calls.txt\r\nTumor_Sample_Barcode    Hugo_Symbol     tcn     lcn     chr     seg.start       seg.end frac_elev_major_cn      Nprobes WGDm                                                         cn      FACETS_CNA      FACETS_CALL\r\nNA      WT1     NA      NA      11      NA      NA      NA      1       NA      NA      NA      NA\r\n/ifs/res/pwg/tests/cmo_testdata/facets/facets_test_with_seed/H_LS-A8-A094-01A-11W-A019-09-1__H_LS-A8-A094-10A-01W-A021-09-1.                                                         cncf.txt        ABL1    7       3       9       127115800       133914570       0.944862280314182       12      WGD     4  2                                                         AMP"}}