{"action":"created","issue":{"url":"https://api.github.com/repos/stan-dev/example-models/issues/29","labels_url":"https://api.github.com/repos/stan-dev/example-models/issues/29/labels{/name}","comments_url":"https://api.github.com/repos/stan-dev/example-models/issues/29/comments","events_url":"https://api.github.com/repos/stan-dev/example-models/issues/29/events","html_url":"https://github.com/stan-dev/example-models/pull/29","id":99645441,"number":29,"title":"Dmenne BUG","user":{"login":"dmenne","id":506275,"avatar_url":"https://avatars.githubusercontent.com/u/506275?v=3","gravatar_id":"","url":"https://api.github.com/users/dmenne","html_url":"https://github.com/dmenne","followers_url":"https://api.github.com/users/dmenne/followers","following_url":"https://api.github.com/users/dmenne/following{/other_user}","gists_url":"https://api.github.com/users/dmenne/gists{/gist_id}","starred_url":"https://api.github.com/users/dmenne/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dmenne/subscriptions","organizations_url":"https://api.github.com/users/dmenne/orgs","repos_url":"https://api.github.com/users/dmenne/repos","events_url":"https://api.github.com/users/dmenne/events{/privacy}","received_events_url":"https://api.github.com/users/dmenne/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-08-07T13:17:28Z","updated_at":"2015-08-07T13:29:21Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/stan-dev/example-models/pulls/29","html_url":"https://github.com/stan-dev/example-models/pull/29","diff_url":"https://github.com/stan-dev/example-models/pull/29.diff","patch_url":"https://github.com/stan-dev/example-models/pull/29.patch"},"body":"- Add R test programs to rats, pump, seeds, surgical (1-4, Volume 1) examples of BUGS manual.\r\n- Added \".stanified\" versions of Stan-programs to better reflect recommened practices. \r\n  -- using vectorized if possible\r\n  -- replace 1/sigmasquared contortions by sigma\r\n  -- delete duplicate or non-required files\r\n  -- somewhat narrower or wider (=default) priors\r\n  -- test if program converges by running with default random init instead of the constant init.\r\n\r\nTo discuss: there is a warning to increment in old version \"rats_vec_unit.stan\". Result seem ok, and I do not understand what to do; I tend to remove the example, it is not very useful, but try to understand first.\r\n"},"comment":{"url":"https://api.github.com/repos/stan-dev/example-models/issues/comments/128699006","html_url":"https://github.com/stan-dev/example-models/pull/29#issuecomment-128699006","issue_url":"https://api.github.com/repos/stan-dev/example-models/issues/29","id":128699006,"user":{"login":"dmenne","id":506275,"avatar_url":"https://avatars.githubusercontent.com/u/506275?v=3","gravatar_id":"","url":"https://api.github.com/users/dmenne","html_url":"https://github.com/dmenne","followers_url":"https://api.github.com/users/dmenne/followers","following_url":"https://api.github.com/users/dmenne/following{/other_user}","gists_url":"https://api.github.com/users/dmenne/gists{/gist_id}","starred_url":"https://api.github.com/users/dmenne/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dmenne/subscriptions","organizations_url":"https://api.github.com/users/dmenne/orgs","repos_url":"https://api.github.com/users/dmenne/repos","events_url":"https://api.github.com/users/dmenne/events{/privacy}","received_events_url":"https://api.github.com/users/dmenne/received_events","type":"User","site_admin":false},"created_at":"2015-08-07T13:29:21Z","updated_at":"2015-08-07T13:29:21Z","body":"Hi, Ben,\n\n \n\nI do this for my own education, but then Bob asked me to submit a pull request.\n\n \n\nIt certainly would be good to coordinate. What have you done already? Dividing by the volume line seems ok, but I don’t mind trying other examples.\n\n \n\nDieter\n\n \n\nVon: benlambertStan [mailto:notifications@github.com] \nGesendet: Freitag, 7. August 2015 15:23\nAn: stan-dev/example-models <example-models@noreply.github.com>\nCc: Dieter Menne <dieter.menne@menne-biomed.de>\nBetreff: Re: [example-models] Dmenne BUG (#29)\n\n \n\nHi,\n\nI'm also going through the example models in BUGS. Is it worth me continuing on volume 2 so as not to duplicate the workload?\n\nBest,\n\nBen\n\n\n\n> On 7 Aug 2015, at 15:17, Dieter Menne < <mailto:notifications@github.com> notifications@github.com> wrote:\n> \n> Add R test programs to rats, pump, seeds, surgical (1-4, Volume 1) examples of BUGS manual.\n> Added \".stanified\" versions of Stan-programs to better reflect recommened practices. -- using vectorized if possible -- replace 1/sigmasquared contortions by sigma -- delete duplicate or non-required files -- somewhat narrower or wider (=default) priors -- test if program converges by running with default random init instead of the constant init.\n> To discuss: there is a warning to increment in old version \"rats_vec_unit.stan\". Result seem ok, and I do not understand what to do; I tend to remove the example, it is not very useful, but try to understand first.\n> \n> You can view, comment on, or merge this pull request online at:\n> \n>  <https://github.com/stan-dev/example-models/pull/29> https://github.com/stan-dev/example-models/pull/29\n> \n> Commit Summary\n> \n> Quick and dirty R script to find the stan files without sample R \n> Corrected pilot examples to be close to ARM13.5\n> Delete duplicate data files.\n> Vectorize Pump example\n> Add R test program for seeds (BUGS vol 1, 3)\n> Add constrained to zero coefficients as in chapter 3.1 of BUGS manual\n> Corrected WinBUGS link. Links are still incorrect in the individiual files, will be corrected in bulk later.\n> Add R program with plot to created Figure 6 in BUGS manual.\n> Add R program with plot to creat Figure 6 and Figure 7 (ranking) in BUGS manual.\n> Plot Figure 6/7 in manual\n> File Changes\n> \n> A .gitignore (4)\n> M ARM/Ch.13/13.5_Non-NestedModels.R (6)\n> M ARM/Ch.13/pilots.stan (32)\n> A ARM/UnmatchedStanFiles.R (22)\n> M bugs_examples/README.txt (8)\n> A bugs_examples/vol1/pump/pump.R (51)\n> M bugs_examples/vol1/pump/pump.stan (18)\n> A bugs_examples/vol1/rats/rats.R (74)\n> A bugs_examples/vol1/rats/rats_stanified.stan (39)\n> D bugs_examples/vol1/rats/rats_vec.data.R (22)\n> D bugs_examples/vol1/rats/rats_vec_unit.data.R (22)\n> A bugs_examples/vol1/seeds/seeds.R (107)\n> A bugs_examples/vol1/seeds/seeds_centered.stan (40)\n> A bugs_examples/vol1/seeds/seeds_stanified.stan (34)\n> A bugs_examples/vol1/surgical/surgical.R (64)\n> D bugs_examples/vol1/surgical/surgical_simple.init.R (1)\n> D bugs_examples/vol1/surgical/surgical_simple.stan (11)\n> A bugs_examples/vol1/surgical/surgical_stanified.stan (32)\n> A example-models.Rproj (16)\n> Patch Links:\n> \n>  <https://github.com/stan-dev/example-models/pull/29.patch> https://github.com/stan-dev/example-models/pull/29.patch\n>  <https://github.com/stan-dev/example-models/pull/29.diff> https://github.com/stan-dev/example-models/pull/29.diff\n> —\n> Reply to this email directly or view it on GitHub.\n> \n\n\n\n—\nReply to this email directly or view it on GitHub <https://github.com/stan-dev/example-models/pull/29#issuecomment-128697791> .  <https://github.com/notifications/beacon/AAe5o-tR1FCwcyov5AH9AP2NZiq3dfvJks5olKi3gaJpZM4Fnigi.gif> \n\n"}}