{"action":"opened","issue":{"url":"https://api.github.com/repos/marbl/parsnp/issues/6","labels_url":"https://api.github.com/repos/marbl/parsnp/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/marbl/parsnp/issues/6/comments","events_url":"https://api.github.com/repos/marbl/parsnp/issues/6/events","html_url":"https://github.com/marbl/parsnp/issues/6","id":53483024,"number":6,"title":"Parsnp -d sometimes fails to recruit random files","user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars.githubusercontent.com/u/453972?v=3","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-01-06T05:36:34Z","updated_at":"2015-01-06T05:36:34Z","closed_at":null,"body":"Todd,\r\n\r\nIf I create a folder called 'fasta' with 20 small identical fasta files and run \"parsnp -r '!' -d fasta\" and run it, often my resulting tree only has 19 genomes in it, and other times 20.  The 'missing' genome is somewhat random, and is missing from the RECRUITED GENOMES list. By running the command over and over again I get different results.\r\n\r\nThis bug has us confused, so I'm thinking it might be a non-deterministic parallel race condition maybe? Even though I'm using default -p 1. \r\n\r\nTorsten\r\n\r\n"}}