{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/go-ontology/issues/12149","labels_url":"https://api.github.com/repos/geneontology/go-ontology/issues/12149/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/go-ontology/issues/12149/comments","events_url":"https://api.github.com/repos/geneontology/go-ontology/issues/12149/events","html_url":"https://github.com/geneontology/go-ontology/issues/12149","id":115479468,"number":12149,"title":"Endosomal transport / results_in_transport_to_from_or_mediated_by","user":{"login":"dosumis","id":112839,"avatar_url":"https://avatars.githubusercontent.com/u/112839?v=3","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/geneontology/go-ontology/labels/ETINE","name":"ETINE","color":"5319e7"}],"state":"open","locked":false,"assignee":{"login":"cmungall","id":50745,"avatar_url":"https://avatars.githubusercontent.com/u/50745?v=3","gravatar_id":"","url":"https://api.github.com/users/cmungall","html_url":"https://github.com/cmungall","followers_url":"https://api.github.com/users/cmungall/followers","following_url":"https://api.github.com/users/cmungall/following{/other_user}","gists_url":"https://api.github.com/users/cmungall/gists{/gist_id}","starred_url":"https://api.github.com/users/cmungall/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmungall/subscriptions","organizations_url":"https://api.github.com/users/cmungall/orgs","repos_url":"https://api.github.com/users/cmungall/repos","events_url":"https://api.github.com/users/cmungall/events{/privacy}","received_events_url":"https://api.github.com/users/cmungall/received_events","type":"User","site_admin":false},"milestone":null,"comments":5,"created_at":"2015-11-06T10:34:47Z","updated_at":"2015-11-17T11:24:03Z","closed_at":null,"body":"def: \"The directed movement of substances into, out of, or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation.\"\r\nEquivalentTo:\r\ntransport and (results\\_in\\_transport\\_to\\_from\\_or\\_mediated\\_by some endosome)\r\n\r\nThis is the *only* use of 'results\\_in\\_transport\\_to\\_from\\_or\\_mediated\\_by', which is a leaf-node relation.  There is therefore no infered classification under this term (although there are a bunch of things that used to be inferred subclasses (see end)).\r\n\r\nThis could be fixed by moving this relation under \r\nresults\\_in\\_transport\\_to\\_from\\_or\\_in  AND mediated_by*\r\n\r\nBUT - this would be a somewhat hacky.  It would only be safe in patterns with transport in the range.\r\n\r\n(*mediated_by = has_agent = has_active_participant?)\r\n\r\nETINES:\r\nGO:0006895 'Golgi to endosome transport' GO:0016197 'endosomal transport'\r\nGO:0008333 'endosome to lysosome transport' GO:0016197 'endosomal transport'\r\nGO:0043485 'endosome to pigment granule transport' GO:0016197 'endosomal transport'\r\nGO:0045022 'early endosome to late endosome transport' GO:0016197 'endosomal transport'\r\nGO:0045324 'late endosome to vacuole transport' GO:0016197 'endosomal transport'\r\nGO:0048227 'plasma membrane to endosome transport' GO:0016197 'endosomal transport'\r\nGO:0061502 'early endosome to recycling endosome transport' GO:0016197 'endosomal transport'\r\nGO:0006895 'Golgi to endosome transport' GO:0016197 'endosomal transport'\r\nGO:0008333 'endosome to lysosome transport' GO:0016197 'endosomal transport'\r\nGO:0043485 'endosome to pigment granule transport' GO:0016197 'endosomal transport'\r\nGO:0045022 'early endosome to late endosome transport' GO:0016197 'endosomal transport'\r\nGO:0045324 'late endosome to vacuole transport' GO:0016197 'endosomal transport'\r\nGO:0048227 'plasma membrane to endosome transport' GO:0016197 'endosomal transport'\r\nGO:0061502 'early endosome to recycling endosome transport' GO:0016197 'endosomal transport'\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/geneontology/go-ontology/issues/comments/157342088","html_url":"https://github.com/geneontology/go-ontology/issues/12149#issuecomment-157342088","issue_url":"https://api.github.com/repos/geneontology/go-ontology/issues/12149","id":157342088,"user":{"login":"dosumis","id":112839,"avatar_url":"https://avatars.githubusercontent.com/u/112839?v=3","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"created_at":"2015-11-17T11:24:03Z","updated_at":"2015-11-17T11:24:03Z","body":"@ValWood - Is results_in_transport_to_from_or_in sufficient - skipping the mediated_by ?\r\n\r\n=>\r\n\r\nlabel: endosomal transport\r\ndef: \"The directed movement of substances into, out of, or in an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation.\"\r\nEquivalentTo:\r\ntransport and (results_in_transport_to_from_or_in some endosome)\r\n"}}