{"action":"opened","issue":{"url":"https://api.github.com/repos/GELOG/adam-ibs/issues/6","labels_url":"https://api.github.com/repos/GELOG/adam-ibs/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/GELOG/adam-ibs/issues/6/comments","events_url":"https://api.github.com/repos/GELOG/adam-ibs/issues/6/events","html_url":"https://github.com/GELOG/adam-ibs/issues/6","id":69963081,"number":6,"title":"Feature: Genome-wide IBS/IBD Pairwise Measures persistence with ADAM format","user":{"login":"davidonlaptop","id":10860,"avatar_url":"https://avatars.githubusercontent.com/u/10860?v=3","gravatar_id":"","url":"https://api.github.com/users/davidonlaptop","html_url":"https://github.com/davidonlaptop","followers_url":"https://api.github.com/users/davidonlaptop/followers","following_url":"https://api.github.com/users/davidonlaptop/following{/other_user}","gists_url":"https://api.github.com/users/davidonlaptop/gists{/gist_id}","starred_url":"https://api.github.com/users/davidonlaptop/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davidonlaptop/subscriptions","organizations_url":"https://api.github.com/users/davidonlaptop/orgs","repos_url":"https://api.github.com/users/davidonlaptop/repos","events_url":"https://api.github.com/users/davidonlaptop/events{/privacy}","received_events_url":"https://api.github.com/users/davidonlaptop/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-04-21T21:59:54Z","updated_at":"2015-04-21T21:59:54Z","closed_at":null,"body":"# Description\r\nThis feature allow persistence of the model created in issue #3 and #4 via the `--genome` and `--genome-full` parameters.\r\n\r\nThe Spark models should integrates with the [ADAM format](https://github.com/GELOG/adam-ibs/wiki/ADAM_Format). New record types may need to be added to the ADAM format.\r\n\r\nThe ADAM formats can be added as a maven dependency. The structure of the ADAM format is defined in an [Avro file](https://github.com/bigdatagenomics/bdg-formats/blob/master/src/main/resources/avro/bdg.avdl). The Avro file can be compiled into Java classes.\r\n\r\nFor updates to the ADAM format, choose the most simple solution for you as long as it is easy to diff the changes to the Avro file.\r\n\r\n# Analysis\r\nAdd a comment to this issue with:\r\n- the missing fields and record types in the current ADAM format\r\n\r\n# Design\r\nAdd a comment to this issue describing how this will be implemented in Spark, and explain how the persistence model will work.\r\n\r\n# Implementation\r\nThe implementation should use:\r\n- Scala\r\n- Spark RDD\r\n- Avro\r\n- Parquet"}}