{"action":"created","issue":{"url":"https://api.github.com/repos/PecanProject/pecan/issues/478","labels_url":"https://api.github.com/repos/PecanProject/pecan/issues/478/labels{/name}","comments_url":"https://api.github.com/repos/PecanProject/pecan/issues/478/comments","events_url":"https://api.github.com/repos/PecanProject/pecan/issues/478/events","html_url":"https://github.com/PecanProject/pecan/issues/478","id":75341964,"number":478,"title":"PEcAn issue with reading ED2 output","user":{"login":"Viskari","id":3179426,"avatar_url":"https://avatars.githubusercontent.com/u/3179426?v=3","gravatar_id":"","url":"https://api.github.com/users/Viskari","html_url":"https://github.com/Viskari","followers_url":"https://api.github.com/users/Viskari/followers","following_url":"https://api.github.com/users/Viskari/following{/other_user}","gists_url":"https://api.github.com/users/Viskari/gists{/gist_id}","starred_url":"https://api.github.com/users/Viskari/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Viskari/subscriptions","organizations_url":"https://api.github.com/users/Viskari/orgs","repos_url":"https://api.github.com/users/Viskari/repos","events_url":"https://api.github.com/users/Viskari/events{/privacy}","received_events_url":"https://api.github.com/users/Viskari/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"Viskari","id":3179426,"avatar_url":"https://avatars.githubusercontent.com/u/3179426?v=3","gravatar_id":"","url":"https://api.github.com/users/Viskari","html_url":"https://github.com/Viskari","followers_url":"https://api.github.com/users/Viskari/followers","following_url":"https://api.github.com/users/Viskari/following{/other_user}","gists_url":"https://api.github.com/users/Viskari/gists{/gist_id}","starred_url":"https://api.github.com/users/Viskari/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Viskari/subscriptions","organizations_url":"https://api.github.com/users/Viskari/orgs","repos_url":"https://api.github.com/users/Viskari/repos","events_url":"https://api.github.com/users/Viskari/events{/privacy}","received_events_url":"https://api.github.com/users/Viskari/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/PecanProject/pecan/milestones/14","html_url":"https://github.com/PecanProject/pecan/milestones/1.4.3%20Flux%20Course%202015%20&%20Benchmark%20calculations","labels_url":"https://api.github.com/repos/PecanProject/pecan/milestones/14/labels","id":955562,"number":14,"title":"1.4.3 Flux Course 2015 & Benchmark calculations","description":"","creator":{"login":"mdietze","id":3081466,"avatar_url":"https://avatars.githubusercontent.com/u/3081466?v=3","gravatar_id":"","url":"https://api.github.com/users/mdietze","html_url":"https://github.com/mdietze","followers_url":"https://api.github.com/users/mdietze/followers","following_url":"https://api.github.com/users/mdietze/following{/other_user}","gists_url":"https://api.github.com/users/mdietze/gists{/gist_id}","starred_url":"https://api.github.com/users/mdietze/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mdietze/subscriptions","organizations_url":"https://api.github.com/users/mdietze/orgs","repos_url":"https://api.github.com/users/mdietze/repos","events_url":"https://api.github.com/users/mdietze/events{/privacy}","received_events_url":"https://api.github.com/users/mdietze/received_events","type":"User","site_admin":false},"open_issues":33,"closed_issues":7,"state":"open","created_at":"2015-01-28T20:31:16Z","updated_at":"2015-05-14T14:36:48Z","due_on":"2015-06-29T22:00:00Z","closed_at":null},"comments":7,"created_at":"2015-05-11T20:10:22Z","updated_at":"2015-05-19T19:09:40Z","closed_at":null,"body":"When running pecan with the current git version of ED2, I get the following error message:\r\n\r\n> model2netcdf.ED2('/data/tviskari/pecan/out/ENS-00001', 45.92, -90.45, '2004/01/01', '2004/12/31')\r\n[1] \"2003<2004\"\r\n[1] \"----- Processing year:  2004\"\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_BDEAD in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_PLANT_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_CO2CAN in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_GPP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_HTROPH_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_GPP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_PLANT_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_HTROPH_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_GPP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_PLANT_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_HTROPH_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_PLANT_RESP in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_FSC in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_STSC in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_SSC in ed hdf5 output.\r\n2015-05-11 16:01:36 WARN   [getHdf5Data] :\r\n   Could not find AVG_SOIL_TEMP in ed hdf5 output.\r\nError in array(0, ncol(soiltemp)) : 'dims' cannot be of length 0\r\nCalls: model2netcdf.ED2 -> array\r\nExecution halted\r\n\r\nLooking at the ED2 ed_state_vars.f90 in an older version and the new version, there are a lot of variables relating to those missing in the new version, with most of the AVG_* files are missing, especially the NACP comparison variables.\r\n\r\n I can start working on this, but first I need confirmation whetever or not try to have those added back to ED2 or to alter pecan?"},"comment":{"url":"https://api.github.com/repos/PecanProject/pecan/issues/comments/103636731","html_url":"https://github.com/PecanProject/pecan/issues/478#issuecomment-103636731","issue_url":"https://api.github.com/repos/PecanProject/pecan/issues/478","id":103636731,"user":{"login":"Viskari","id":3179426,"avatar_url":"https://avatars.githubusercontent.com/u/3179426?v=3","gravatar_id":"","url":"https://api.github.com/users/Viskari","html_url":"https://github.com/Viskari","followers_url":"https://api.github.com/users/Viskari/followers","following_url":"https://api.github.com/users/Viskari/following{/other_user}","gists_url":"https://api.github.com/users/Viskari/gists{/gist_id}","starred_url":"https://api.github.com/users/Viskari/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Viskari/subscriptions","organizations_url":"https://api.github.com/users/Viskari/orgs","repos_url":"https://api.github.com/users/Viskari/repos","events_url":"https://api.github.com/users/Viskari/events{/privacy}","received_events_url":"https://api.github.com/users/Viskari/received_events","type":"User","site_admin":false},"created_at":"2015-05-19T19:09:40Z","updated_at":"2015-05-19T19:09:40Z","body":"Alright, after going through FMEAN_ variables and trying my best to connect them with the AVG_variables, the following were missing:\r\n\r\n AVG_BDEAD\r\nAVG_BALIVE\r\nAVG_HTROPH_RESP\r\nAVG_FSC\r\nAVG_STSC\r\nAVG_SSC\r\n\r\n I already posted on the ED2 issue if they have suggestions what to use instead, but also thought to post the question here if there are suggestions. Also, what is the difference between STSC and SSC, as what I am able to find in ED2 seems to indicate both represent Soil Structural Carbon?"}}