{"action":"opened","issue":{"url":"https://api.github.com/repos/karel-brinda/rnftools/issues/41","labels_url":"https://api.github.com/repos/karel-brinda/rnftools/issues/41/labels{/name}","comments_url":"https://api.github.com/repos/karel-brinda/rnftools/issues/41/comments","events_url":"https://api.github.com/repos/karel-brinda/rnftools/issues/41/events","html_url":"https://github.com/karel-brinda/rnftools/issues/41","id":116518547,"number":41,"title":"Errors when Snakefile changed and old experiment directory kept","user":{"login":"karel-brinda","id":8779046,"avatar_url":"https://avatars.githubusercontent.com/u/8779046?v=3","gravatar_id":"","url":"https://api.github.com/users/karel-brinda","html_url":"https://github.com/karel-brinda","followers_url":"https://api.github.com/users/karel-brinda/followers","following_url":"https://api.github.com/users/karel-brinda/following{/other_user}","gists_url":"https://api.github.com/users/karel-brinda/gists{/gist_id}","starred_url":"https://api.github.com/users/karel-brinda/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/karel-brinda/subscriptions","organizations_url":"https://api.github.com/users/karel-brinda/orgs","repos_url":"https://api.github.com/users/karel-brinda/repos","events_url":"https://api.github.com/users/karel-brinda/events{/privacy}","received_events_url":"https://api.github.com/users/karel-brinda/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/karel-brinda/rnftools/labels/bug","name":"bug","color":"fc2929"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":0,"created_at":"2015-11-12T10:13:44Z","updated_at":"2015-11-12T10:13:44Z","closed_at":null,"body":"```\r\nError in job 42 while creating output file mtb_reads.fq.\r\nRuleException:\r\nValueError in line 36 of /usr/local/lib/python3.4/dist-packages/rnftools/mishmash/mishmash.snake:\r\nWrong read name '__000001__(01,01,R,001362565,000000000),(01,01,R,001362565,000000000)__[dwgsim,reads-in-tuple:2]/1'. Single end read should not contain '/'.\r\n```\r\n\r\nSolution: make all files produced files dependent on Snakefile."}}