{"action":"closed","issue":{"url":"https://api.github.com/repos/marcelm/cutadapt/issues/100","labels_url":"https://api.github.com/repos/marcelm/cutadapt/issues/100/labels{/name}","comments_url":"https://api.github.com/repos/marcelm/cutadapt/issues/100/comments","events_url":"https://api.github.com/repos/marcelm/cutadapt/issues/100/events","html_url":"https://github.com/marcelm/cutadapt/issues/100","id":61281448,"number":100,"title":"Illumina 1.8+ header support","user":{"login":"marcelm","id":724864,"avatar_url":"https://avatars.githubusercontent.com/u/724864?v=3","gravatar_id":"","url":"https://api.github.com/users/marcelm","html_url":"https://github.com/marcelm","followers_url":"https://api.github.com/users/marcelm/followers","following_url":"https://api.github.com/users/marcelm/following{/other_user}","gists_url":"https://api.github.com/users/marcelm/gists{/gist_id}","starred_url":"https://api.github.com/users/marcelm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/marcelm/subscriptions","organizations_url":"https://api.github.com/users/marcelm/orgs","repos_url":"https://api.github.com/users/marcelm/repos","events_url":"https://api.github.com/users/marcelm/events{/privacy}","received_events_url":"https://api.github.com/users/marcelm/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/marcelm/cutadapt/labels/bug","name":"bug","color":"fc2929"},{"url":"https://api.github.com/repos/marcelm/cutadapt/labels/imported","name":"imported","color":"FFFFFF"}],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2015-03-13T22:33:49Z","updated_at":"2015-03-13T22:33:56Z","closed_at":"2015-03-13T22:33:56Z","body":"_From [dbern...@soe.ucsc.edu](https://code.google.com/u/107503477348398353893/) on November 24, 2014 23:49:09_\n\nIt seems that Illumina's new header style is using tabs to separate the header from the pair ID, as in:\r\n@M00141:217:000000000-A55DC:1:1118:10458:19998\t2:N:0:1\r\n\r\nIn seqio.PairedSequenceReader, it attempts to deal with this by using space as a delimiter. If this is changed to whitespace, then all is well with the new format.\r\n\r\nSo...\r\nchanging:\r\n                        name1 = r1 .name.split(' ')[0]\r\n\t\t\tname2 = r2 .name.split(' ')[0]\r\nto:\r\n                        name1 = r1 .name.split()[0]\r\n\t\t\tname2 = r2 .name.split()[0]\r\nseems to fix the issue.\n\n_Original issue: http://code.google.com/p/cutadapt/issues/detail?id=90_"}}